AT3G08620 : -
Query Information
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AGICode AT3G08620
Description RNA-binding KH domain-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G08620 RNA-binding KH domain-containing protein 1 0.32 -0.33
2 AT2G12550 ubiquitin-associated (UBA)/TS-N domain-containing protein homolog of human NUB1 0.76 0.29 -0.32
3 AT5G48250 B-box type zinc finger protein with CCT domain 0.76 0.34 -0.31
4 AT4G38580 farnesylated protein 6 farnesylated protein 6,
farnesylated protein 6, HEAVY
METAL ASSOCIATED ISOPRENYLATED
PLANT PROTEIN 26		 0.76 0.33 -0.33
5 AT1G28060 Pre-mRNA-splicing factor 3 0.74 0.3 -0.34
6 AT3G04610 RNA-binding KH domain-containing protein flowering locus KH domain 0.72 0.33 -0.34
7 AT3G57340 Heat shock protein DnaJ, N-terminal with domain of unknown
function (DUF1977)		 0.71 0.31 -0.33
8 AT5G43440 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.69 0.31 -0.33
9 AT2G33730 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.69 0.32 -0.34
10 AT3G02400 SMAD/FHA domain-containing protein 0.69 0.33 -0.31
11 AT2G28720 Histone superfamily protein 0.68 0.28 -0.34
12 AT3G58050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G41960.1); Has 13384 Blast
hits to 8116 proteins in 546 species: Archae - 41; Bacteria
- 766; Metazoa - 5596; Fungi - 1431; Plants - 589; Viruses
- 46; Other Eukaryotes - 4915 (source: NCBI BLink).		 0.68 0.31 -0.32
13 AT1G32860 Glycosyl hydrolase superfamily protein 0.68 0.31 -0.31
14 AT5G13270 Pentatricopeptide repeat (PPR) superfamily protein REQUIRED FOR ACCD RNA EDITING 1 0.68 0.32 -0.32
15 AT3G17830 Molecular chaperone Hsp40/DnaJ family protein 0.68 0.31 -0.32
16 AT4G16146 cAMP-regulated phosphoprotein 19-related protein 0.68 0.3 -0.32
17 AT3G55760 unknown protein; LOCATED IN: chloroplast stroma,
chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED
DURING: 10 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G42430.2); Has 176 Blast
hits to 125 proteins in 40 species: Archae - 0; Bacteria -
3; Metazoa - 19; Fungi - 9; Plants - 81; Viruses - 0; Other
Eukaryotes - 64 (source: NCBI BLink).		 0.67 0.31 -0.31
18 AT1G02330 CONTAINS InterPro DOMAIN/s: Hepatocellular
carcinoma-associated antigen 59 (InterPro:IPR010756); Has
1239 Blast hits to 998 proteins in 204 species: Archae - 4;
Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87;
Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink).		 0.67 0.32 -0.31
19 AT1G77850 auxin response factor 17 auxin response factor 17 0.67 0.31 -0.31
20 AT4G14900 FRIGIDA-like protein 0.67 0.31 -0.33
21 AT4G24680 modifier of snc1 MODIFIER OF snc1 0.67 0.28 -0.31
22 AT1G51600 ZIM-LIKE 2 GATA TRANSCRIPTION FACTOR 28,
TIFY2A, ZIM-LIKE 2		 0.67 0.3 -0.3
23 AT1G73350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; Has 46 Blast hits to 46 proteins
in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi
- 3; Plants - 36; Viruses - 0; Other Eukaryotes - 4
(source: NCBI BLink).		 0.66 0.3 -0.33
24 AT2G44020 Mitochondrial transcription termination factor family
protein		 0.65 0.3 -0.34
25 AT1G11210 Protein of unknown function (DUF761) 0.65 0.29 -0.32
26 AT4G30935 WRKY DNA-binding protein 32 ATWRKY32, WRKY DNA-binding protein
32		 0.65 0.31 -0.32
27 AT2G21520 Sec14p-like phosphatidylinositol transfer family protein 0.65 0.3 -0.3
28 AT5G25500 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.65 0.31 -0.3
29 AT1G49560 Homeodomain-like superfamily protein 0.65 0.32 -0.31
30 AT3G09320 DHHC-type zinc finger family protein 0.65 0.31 -0.3
31 AT4G24270 EMBRYO DEFECTIVE 140 EMBRYO DEFECTIVE 140 0.64 0.31 -0.31
32 AT5G41260 Protein kinase protein with tetratricopeptide repeat domain 0.64 0.32 -0.32
33 AT5G56140 RNA-binding KH domain-containing protein 0.64 0.32 -0.31
34 AT3G62690 AtL5 AtL5 0.63 0.32 -0.32
35 AT1G17665 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 11 growth stages; Has 149 Blast hits to
146 proteins in 39 species: Archae - 0; Bacteria - 4;
Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other
Eukaryotes - 89 (source: NCBI BLink).		 0.63 0.33 -0.32
36 AT5G45370 nodulin MtN21 /EamA-like transporter family protein -0.63 0.33 -0.31
37 AT5G21040 F-box protein 2 F-box protein 2 0.63 0.32 -0.29
38 AT2G47120 NAD(P)-binding Rossmann-fold superfamily protein -0.63 0.29 -0.3
39 AT2G21130 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.63 0.31 -0.32
40 AT1G46768 related to AP2 1 related to AP2 1 0.62 0.3 -0.31
41 AT1G53390 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATP-binding cassette G24 -0.62 0.31 -0.32
42 AT2G45660 AGAMOUS-like 20 AGAMOUS-like 20, SUPPRESSOR OF
OVEREXPRESSION OF CO 1, SUPPRESSOR
OF OVEREXPRESSION OF CO 1		 0.62 0.3 -0.32
43 AT1G55690 Sec14p-like phosphatidylinositol transfer family protein 0.62 0.3 -0.32
44 AT1G75420 UDP-Glycosyltransferase superfamily protein 0.62 0.32 -0.31
45 AT5G47430 DWNN domain, a CCHC-type zinc finger 0.62 0.3 -0.3
46 AT4G05150 Octicosapeptide/Phox/Bem1p family protein 0.62 0.32 -0.31
47 AT5G10790 ubiquitin-specific protease 22 ubiquitin-specific protease 22 0.62 0.31 -0.31
48 AT5G62930 SGNH hydrolase-type esterase superfamily protein -0.61 0.32 -0.33
49 AT5G49410 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G73940.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.61 0.34 -0.3
50 AT2G40650 PRP38 family protein 0.61 0.32 -0.3
51 AT5G62640 proline-rich family protein AtELF5, EARLY FLOWERING 5 0.61 0.33 -0.32
52 AT4G31880 LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Tudor/PWWP/MBT
superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast
hits to 70781 proteins in 2973 species: Archae - 289;
Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants -
6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI
BLink).		 0.61 0.31 -0.32
53 AT1G30300 Metallo-hydrolase/oxidoreductase superfamily protein -0.6 0.31 -0.32
54 AT1G22460 O-fucosyltransferase family protein -0.6 0.33 -0.3
55 AT2G31870 Poly (ADP-ribose) glycohydrolase (PARG) poly(ADP-ribose) glycohydrolase 1,
Sanskrit for 'bright'		 0.6 0.3 -0.3
56 AT2G42490 Copper amine oxidase family protein -0.6 0.31 -0.31
57 AT5G63640 ENTH/VHS/GAT family protein 0.59 0.31 -0.33
58 AT4G40010 SNF1-related protein kinase 2.7 SUCROSE NONFERMENTING 1-RELATED
PROTEIN KINASE 2-7, SNF1-related
protein kinase 2.7, SRK2F		 0.59 0.33 -0.31
59 AT3G58520 Ubiquitin carboxyl-terminal hydrolase family protein 0.59 0.32 -0.3
60 AT3G17510 CBL-interacting protein kinase 1 CBL-interacting protein kinase 1,
SNF1-RELATED PROTEIN KINASE 3.16		 -0.59 0.3 -0.33
61 AT1G48560 unknown protein; Has 75 Blast hits to 71 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0;
Plants - 69; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.59 0.32 -0.3
62 AT5G51650 unknown protein; Has 610 Blast hits to 233 proteins in 59
species: Archae - 0; Bacteria - 11; Metazoa - 230; Fungi -
26; Plants - 172; Viruses - 0; Other Eukaryotes - 171
(source: NCBI BLink).		 -0.59 0.33 -0.32
63 AT1G73710 Pentatricopeptide repeat (PPR) superfamily protein 0.59 0.31 -0.31
64 AT2G02820 myb domain protein 88 myb domain protein 88, myb domain
protein 88		 -0.57 0.32 -0.29
65 AT1G61920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: sperm cell, male
gametophyte, pollen tube; EXPRESSED DURING: M germinated
pollen stage; Has 3 Blast hits to 3 proteins in 1 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.31 -0.32
66 AT2G01300 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits
to 73 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.31 -0.31
67 AT2G31590 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G04730.1); Has 30 Blast hits
to 30 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.56 0.31 -0.31
68 AT1G55960 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.55 0.32 -0.29
69 AT2G15240 UNC-50 family protein -0.55 0.32 -0.32
70 AT4G01450 nodulin MtN21 /EamA-like transporter family protein -0.55 0.33 -0.32
71 AT1G23880 NHL domain-containing protein -0.54 0.31 -0.32
72 AT5G49370 Pleckstrin homology (PH) domain superfamily protein -0.54 0.29 -0.31
73 AT5G37560 RING/U-box superfamily protein -0.54 0.31 -0.33
74 AT4G02160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G61710.1); Has 35 Blast hits
to 35 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.54 0.32 -0.32
75 AT3G16540 DegP protease 11 DegP protease 11 -0.53 0.3 -0.3
76 AT3G19400 Cysteine proteinases superfamily protein -0.53 0.32 -0.32
77 AT3G26720 Glycosyl hydrolase family 38 protein -0.53 0.3 -0.31
78 AT3G01650 RING domain ligase1 RING domain ligase1 -0.53 0.32 -0.33
79 AT4G17790 SNARE associated Golgi protein family -0.53 0.32 -0.31
80 AT2G14100 cytochrome P450, family 705, subfamily A, polypeptide 13 cytochrome P450, family 705,
subfamily A, polypeptide 13		 -0.53 0.29 -0.31
81 AT4G12400 stress-inducible protein, putative Hop3 -0.51 0.31 -0.33
82 AT2G03460 Galactose oxidase/kelch repeat superfamily protein -0.5 0.33 -0.31
83 AT3G20480 tetraacyldisaccharide 4'-kinase family protein AtLpxK, lipid X K -0.5 0.34 -0.33
84 AT1G07690 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s:
Orthoreovirus membrane fusion p10 (InterPro:IPR009854);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G54950.1); Has 11 Blast hits to 11 proteins in 4
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink).		 -0.5 0.32 -0.32