AT3G11960 : -
Query Information
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AGICode AT3G11960
Description Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G11960 Cleavage and polyadenylation specificity factor (CPSF) A
subunit protein		 1 0.34 -0.31
2 AT1G59930 MADS-box family protein -0.74 0.32 -0.31
3 AT3G32940 RNA-binding KH domain-containing protein 0.74 0.31 -0.32
4 AT2G38870 Serine protease inhibitor, potato inhibitor I-type family
protein		 -0.73 0.33 -0.32
5 AT1G24460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G31570.1); Has 181008 Blast hits to 85359 proteins
in 3551 species: Archae - 3290; Bacteria - 48304; Metazoa -
70793; Fungi - 13943; Plants - 10118; Viruses - 785; Other
Eukaryotes - 33775 (source: NCBI BLink).		 TGN-localized SYP41 interacting
protein		 0.72 0.31 -0.32
6 AT5G35980 yeast YAK1-related gene 1 yeast YAK1-related gene 1 0.72 0.31 -0.3
7 AT5G66490 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 9 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G50900.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.71 0.3 -0.29
8 AT3G18860 transducin family protein / WD-40 repeat family protein 0.71 0.34 -0.3
9 AT3G12810 SNF2 domain-containing protein / helicase domain-containing
protein		 chr13, PHOTOPERIOD-INDEPENDENT
EARLY FLOWERING 1, SRCAP		 0.7 0.32 -0.31
10 AT4G17140 pleckstrin homology (PH) domain-containing protein 0.7 0.3 -0.32
11 AT3G15980 Coatomer, beta' subunit 0.69 0.31 -0.32
12 AT1G50030 target of rapamycin target of rapamycin 0.69 0.32 -0.32
13 AT2G44060 Late embryogenesis abundant protein, group 2 -0.68 0.29 -0.33
14 AT2G39340 SAC3/GANP/Nin1/mts3/eIF-3 p25 family AtSAC3A, yeast Sac3 homolog A 0.68 0.31 -0.3
15 AT1G80930 MIF4G domain-containing protein / MA3 domain-containing
protein		 0.68 0.32 -0.33
16 AT4G22140 PHD finger family protein / bromo-adjacent homology (BAH)
domain-containing protein		 EARLY BOLTING IN SHORT DAYS -0.68 0.32 -0.33
17 AT3G50370 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 27734
Blast hits to 16708 proteins in 1259 species: Archae - 81;
Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants -
987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI
BLink).		 0.67 0.31 -0.32
18 AT1G23350 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.67 0.3 -0.31
19 AT1G13700 6-phosphogluconolactonase 1 6-phosphogluconolactonase 1 -0.67 0.34 -0.32
20 AT3G58810 metal tolerance protein A2 ARABIDOPSIS METAL TOLERANCE
PROTEIN 3, ATMTPA2, METAL
TOLERANCE PROTEIN 3, metal
tolerance protein A2		 0.67 0.31 -0.31
21 AT5G26200 Mitochondrial substrate carrier family protein -0.67 0.32 -0.32
22 AT5G16520 unknown protein; Has 25 Blast hits to 25 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.67 0.3 -0.33
23 AT1G77300 histone methyltransferases(H3-K4 specific);histone
methyltransferases(H3-K36 specific)		 ASH1 HOMOLOG 2, CAROTENOID
CHLOROPLAST REGULATORY1, EARLY
FLOWERING IN SHORT DAYS, LAZARUS
2, SET DOMAIN GROUP 8		 0.67 0.31 -0.31
24 AT1G35660 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 11 growth stages; Has 309 Blast hits to 256
proteins in 99 species: Archae - 0; Bacteria - 11; Metazoa
- 192; Fungi - 12; Plants - 36; Viruses - 0; Other
Eukaryotes - 58 (source: NCBI BLink).		 0.66 0.33 -0.31
25 AT1G10390 Nucleoporin autopeptidase 0.66 0.31 -0.33
26 AT2G02560 cullin-associated and neddylation dissociated CULLIN-ASSOCIATED AND NEDDYLATION
DISSOCIATED 1, cullin-associated
and neddylation dissociated, ETA2,
HEMIVENATA, TIP120		 0.66 0.3 -0.32
27 AT5G07280 Leucine-rich repeat transmembrane protein kinase EXCESS MICROSPOROCYTES1, EXTRA
SPOROGENOUS CELLS		 0.66 0.32 -0.31
28 AT4G29940 pathogenesis related homeodomain protein A pathogenesis related homeodomain
protein A		 0.66 0.32 -0.31
29 AT4G00660 RNAhelicase-like 8 ATRH8, RNAhelicase-like 8 0.66 0.3 -0.31
30 AT1G70720 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.65 0.3 -0.29
31 AT1G49350 pfkB-like carbohydrate kinase family protein -0.65 0.33 -0.3
32 AT2G07360 SH3 domain-containing protein 0.65 0.32 -0.31
33 AT3G46540 ENTH/VHS family protein -0.65 0.31 -0.31
34 AT2G36850 glucan synthase-like 8 GLUCAN SYNTHASE-LIKE 8, ATGSL8,
CHORUS, GSL08, glucan
synthase-like 8		 0.65 0.32 -0.31
35 AT3G02260 auxin transport protein (BIG) ATTENUATED SHADE AVOIDANCE 1, BIG,
CORYMBOSA1, DARK OVER-EXPRESSION
OF CAB 1, LOW PHOSPHATE-RESISTANT
ROOT 1, TRANSPORT INHIBITOR
RESPONSE 3, UMBRELLA 1		 0.64 0.3 -0.31
36 AT2G44360 unknown protein; Has 23 Blast hits to 23 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.64 0.31 -0.32
37 AT5G16280 Tetratricopeptide repeat (TPR)-like superfamily protein 0.64 0.33 -0.33
38 AT5G44210 erf domain protein 9 ERF DOMAIN PROTEIN- 9, ERF DOMAIN
PROTEIN 9, erf domain protein 9		 -0.63 0.33 -0.32
39 AT5G40340 Tudor/PWWP/MBT superfamily protein 0.63 0.3 -0.31
40 AT3G50590 Transducin/WD40 repeat-like superfamily protein 0.63 0.31 -0.3
41 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 0.63 0.31 -0.31
42 AT1G32490 RNA helicase family protein EMBRYO DEFECTIVE 2733, ENHANCED
SILENCING PHENOTYPE 3		 0.63 0.32 -0.33
43 AT1G05380 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 0.63 0.3 -0.3
44 AT1G75550 glycine-rich protein 0.63 0.3 -0.3
45 AT5G54660 HSP20-like chaperones superfamily protein -0.63 0.32 -0.33
46 AT3G19930 sugar transporter 4 SUGAR TRANSPORTER 4, sugar
transporter 4		 -0.63 0.33 -0.34
47 AT1G08090 nitrate transporter 2:1 ACH1, NITRATE TRANSPORTER 2.1,
nitrate transporter 2:1, LATERAL
ROOT INITIATION 1, NITRATE
TRANSPORTER 2, NITRATE TRANSPORTER
2.1, nitrate transporter 2:1,
NRT2;1AT		 -0.63 0.32 -0.33
48 AT4G34500 Protein kinase superfamily protein -0.62 0.32 -0.32
49 AT5G13390 no exine formation 1 NO EXINE FORMATION 1 0.62 0.32 -0.31
50 AT1G32480 isocitrate dehydrogenase IV isocitrate dehydrogenase IV 0.62 0.3 -0.31
51 AT1G01040 dicer-like 1 ABNORMAL SUSPENSOR 1, DICER-LIKE
1, CARPEL FACTORY, dicer-like 1,
EMBRYO DEFECTIVE 60, EMBRYO
DEFECTIVE 76, SHORT INTEGUMENTS 1,
SUSPENSOR 1		 0.62 0.31 -0.33
52 AT4G27710 cytochrome P450, family 709, subfamily B, polypeptide 3 cytochrome P450, family 709,
subfamily B, polypeptide 3		 -0.62 0.32 -0.31
53 AT1G48410 Stabilizer of iron transporter SufD / Polynucleotidyl
transferase		 ARGONAUTE 1 0.62 0.32 -0.3
54 AT5G11040 TRS120 AtTRS120, TRS120 0.62 0.3 -0.31
55 AT2G21970 stress enhanced protein 2 stress enhanced protein 2 -0.62 0.32 -0.3
56 AT3G12680 floral homeotic protein (HUA1) ENHANCER OF AG-4 1 0.62 0.29 -0.32
57 AT2G30590 WRKY DNA-binding protein 21 WRKY DNA-binding protein 21 -0.62 0.33 -0.3
58 AT2G02400 NAD(P)-binding Rossmann-fold superfamily protein -0.62 0.32 -0.33
59 AT4G32730 Homeodomain-like protein ATMYB3R-1, ARABIDOOSIS THALIANA
MYB DOMAIN PROTEIN 3R1, MYB DOMAIN
PROTEIN 3R1, C-MYB-LIKE
TRANSCRIPTION FACTOR 3R-1, PC-MYB1		 0.62 0.29 -0.31
60 AT2G45540 WD-40 repeat family protein / beige-related 0.61 0.32 -0.29
61 AT3G44780 Cysteine proteinases superfamily protein -0.61 0.31 -0.32
62 AT1G74710 ADC synthase superfamily protein ARABIDOPSIS ISOCHORISMATE SYNTHASE
1, ENHANCED DISEASE SUSCEPTIBILITY
TO ERYSIPHE ORONTII 16,
ISOCHORISMATE SYNTHASE 1,
SALICYLIC ACID INDUCTION DEFICIENT
2		 -0.61 0.32 -0.31
63 AT5G58210 hydroxyproline-rich glycoprotein family protein 0.61 0.32 -0.3
64 AT2G44000 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.6 0.33 -0.32
65 AT2G25510 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.32 -0.28
66 AT2G28630 3-ketoacyl-CoA synthase 12 3-ketoacyl-CoA synthase 12 -0.6 0.31 -0.31
67 AT5G28280 pseudogene, sterol desaturase domain-containing protein,
CER1-like, A.thaliana, ATCER1L19; blastp match of 55%
identity and 8.9e-22 P-value to
GP|4769012|gb|AAD29719.1|AF143746_1|AF143746 CER1 {Oryza
sativa}		 -0.6 0.3 -0.32
68 AT2G47660 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.28 -0.3
69 AT1G04010 phospholipid sterol acyl transferase 1 ATPSAT1, phospholipid sterol acyl
transferase 1		 0.6 0.32 -0.31
70 AT4G03550 glucan synthase-like 5 glucan synthase-like 5, ATGSL5,
GSL05, glucan synthase-like 5,
GLUCAN SYNTHASE-LIKE 5, POWDERY
MILDEW RESISTANT 4		 0.6 0.32 -0.31
71 AT1G21650 Preprotein translocase SecA family protein SECA2 0.6 0.3 -0.31
72 AT1G14820 Sec14p-like phosphatidylinositol transfer family protein -0.59 0.31 -0.32
73 AT5G42920 THO complex, subunit 5 AtTHO5, THO5 0.59 0.33 -0.32
74 AT4G38380 MATE efflux family protein 0.59 0.31 -0.32
75 AT1G13470 Protein of unknown function (DUF1262) -0.59 0.34 -0.32
76 AT3G61860 RNA-binding (RRM/RBD/RNP motifs) family protein arginine/serine-rich splicing
factor 31, arginine/serine-rich
splicing factor 31,
arginine/serine-rich splicing
factor 31, arginine/serine-rich
splicing factor 31		 -0.59 0.31 -0.34
77 AT5G59860 RNA-binding (RRM/RBD/RNP motifs) family protein 0.59 0.31 -0.33
78 AT3G57260 beta-1,3-glucanase 2 AtPR2, BETA-1,3-GLUCANASE 2,
beta-1,3-glucanase 2,
PATHOGENESIS-RELATED PROTEIN 2,
PATHOGENESIS-RELATED PROTEIN 2		 -0.59 0.32 -0.29
79 AT2G10640 transposable element gene -0.58 0.32 -0.3
80 AT5G35900 LOB domain-containing protein 35 LOB domain-containing protein 35 -0.58 0.32 -0.35
81 AT1G31380 TRAF-like family protein -0.58 0.31 -0.31
82 AT2G16600 rotamase CYP 3 rotamase CYP 3 -0.58 0.31 -0.32
83 AT5G52760 Copper transport protein family -0.58 0.33 -0.33
84 AT1G53710 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.57 0.32 -0.31
85 AT4G24240 WRKY DNA-binding protein 7 ATWRKY7, WRKY DNA-binding protein
7		 -0.57 0.33 -0.34
86 AT5G38970 brassinosteroid-6-oxidase 1 ATBR6OX,
BRASSINOSTEROID-6-OXIDASE,
brassinosteroid-6-oxidase 1,
CYP85A1		 -0.57 0.32 -0.33
87 AT1G65500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 14 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G65486.1); Has 23 Blast hits to 23 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.57 0.32 -0.31
88 AT2G16840 transposable element gene -0.56 0.31 -0.31
89 AT5G18690 arabinogalactan protein 25 arabinogalactan protein 25,
ARABIDOPSIS THALIANA
ARABINOGALACTAN PROTEINS 25		 -0.56 0.32 -0.32
90 AT4G39756 Galactose oxidase/kelch repeat superfamily protein -0.56 0.3 -0.33
91 AT1G19610 Arabidopsis defensin-like protein LOW-MOLECULAR-WEIGHT CYSTEINE-RICH
78, PDF1.4		 -0.56 0.31 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
92 C0074 Cystine L-Cystine L-Cystine protein precursor 0.75 0.43 -0.43 C0074
93 C0233 Sinapinic acid - cis-Sinapinate; Sinapate ferulate and sinapate biosynthesis,
sinapate ester biosynthesis,
free phenylpropanoid acid biosynthesis 		0.67 0.44 -0.46 C0233