AT3G04605 : -
Query Information
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AGICode AT3G04605
Description transposable element gene
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G04605 transposable element gene 1 0.32 -0.33
2 AT1G10950 transmembrane nine 1 AtTMN1, transmembrane nine 1 0.78 0.32 -0.34
3 AT5G43710 Glycosyl hydrolase family 47 protein 0.77 0.29 -0.31
4 AT3G28720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins in
85 species: Archae - 0; Bacteria - 567; Metazoa - 95; Fungi
- 71; Plants - 145; Viruses - 0; Other Eukaryotes - 732
(source: NCBI BLink).		 0.73 0.3 -0.33
5 AT3G43630 Vacuolar iron transporter (VIT) family protein 0.73 0.32 -0.31
6 AT1G67370 DNA-binding HORMA family protein ASYNAPTIC 1, ATASY1 -0.72 0.3 -0.32
7 AT5G61140 U5 small nuclear ribonucleoprotein helicase 0.72 0.33 -0.3
8 AT3G30160 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 14 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G35320.1); Has 9 Blast hits to 9 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.7 0.32 -0.33
9 AT3G56630 cytochrome P450, family 94, subfamily D, polypeptide 2 cytochrome P450, family 94,
subfamily D, polypeptide 2		 0.7 0.31 -0.29
10 AT2G03320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.7 0.3 -0.34
11 AT1G17040 SH2 domain protein A ARABIDOPSIS THALIANA SH2 DOMAIN
PROTEIN A, SH2 domain protein A,
STAT-TYPE LINKER-SH2 DOMAIN FACTOR
A		 -0.7 0.32 -0.33
12 AT4G21150 ribophorin II (RPN2) family protein HAPLESS 6 0.69 0.34 -0.32
13 AT4G31160 DDB1-CUL4 associated factor 1 DDB1-CUL4 associated factor 1 0.68 0.32 -0.3
14 AT5G27150 Na+/H+ exchanger 1 AT-NHX1, ATNHX, ATNHX1, Na+/H+
exchanger 1		 0.68 0.31 -0.32
15 AT3G43920 dicer-like 3 DICER-LIKE 3, dicer-like 3 0.68 0.32 -0.32
16 AT2G20880 Integrase-type DNA-binding superfamily protein AtERF53, ERF domain 53 0.68 0.3 -0.31
17 AT5G58270 ABC transporter of the mitochondrion 3 ATP-binding cassette B25,
ARABIDOPSIS THALIANA ABC
TRANSPORTER OF THE MITOCHONDRION
3, ABC transporter of the
mitochondrion 3, STARIK 1		 0.68 0.3 -0.32
18 AT3G51880 high mobility group B1 AtHMGB1, high mobility group B1,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR D1		 -0.68 0.3 -0.33
19 AT4G22650 CONTAINS InterPro DOMAIN/s: Plant lipid transfer
protein/seed storage/trypsin-alpha amylase inhibitor
(InterPro:IPR003612); BEST Arabidopsis thaliana protein
match is: Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein
(TAIR:AT4G22640.1); Has 25 Blast hits to 25 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.67 0.3 -0.29
20 AT4G24490 RAB geranylgeranyl transferase alpha subunit 1 RAB geranylgeranyl transferase
alpha subunit 1, RAB
geranylgeranyl transferase alpha
subunit 1		 0.66 0.31 -0.31
21 AT4G12860 EF hand calcium-binding protein family unfertilized embryo sac 14 0.66 0.32 -0.31
22 AT2G04830 Protein of unknown function (DUF295) 0.66 0.31 -0.32
23 AT4G35987 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.66 0.31 -0.33
24 AT5G60040 nuclear RNA polymerase C1 nuclear RNA polymerase C1 0.66 0.31 -0.31
25 AT4G39420 unknown protein; Has 46 Blast hits to 40 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.65 0.34 -0.33
26 AT5G55500 beta-1,2-xylosyltransferase ARABIDOPSIS THALIANA
BETA-1,2-XYLOSYLTRANSFERASE,
beta-1,2-xylosyltransferase		 0.65 0.33 -0.3
27 AT5G25520 SPOC domain / Transcription elongation factor S-II protein 0.65 0.32 -0.32
28 AT3G62740 beta glucosidase 7 beta glucosidase 7 -0.65 0.32 -0.33
29 AT2G48160 Tudor/PWWP/MBT domain-containing protein 0.65 0.32 -0.31
30 AT1G44980 pectin methylesterase 7 A. THALIANA PECTIN METHYLESTERASE
7, pectin methylesterase 7		 0.65 0.33 -0.33
31 AT1G63690 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2,
SIGNAL PEPTIDE PEPTIDASE-LIKE 2		 0.65 0.3 -0.32
32 AT5G48450 SKU5 similar 3 SKU5 similar 3 0.65 0.33 -0.29
33 AT2G10760 transposable element gene 0.64 0.28 -0.3
34 AT1G05550 Protein of unknown function (DUF295) 0.64 0.31 -0.33
35 AT2G46020 transcription regulatory protein SNF2, putative ARABIDOPSIS THALIANA BRAHMA,
BRAHMA, CHA2, CHROMATIN REMODELING
2		 0.64 0.31 -0.31
36 AT3G21210 zinc ion binding 0.64 0.31 -0.33
37 AT1G03280 Transcription factor TFIIE, alpha subunit 0.64 0.31 -0.32
38 AT2G07360 SH3 domain-containing protein 0.64 0.32 -0.33
39 AT3G27325 hydrolases, acting on ester bonds 0.64 0.32 -0.29
40 AT1G05070 Protein of unknown function (DUF1068) -0.64 0.31 -0.33
41 AT1G11260 sugar transporter 1 SUGAR TRANSPORTER 1, sugar
transporter 1		 -0.64 0.32 -0.3
42 AT3G03510 Phototropic-responsive NPH3 family protein 0.63 0.31 -0.32
43 AT2G22410 SLOW GROWTH 1 SLOW GROWTH 1 0.63 0.3 -0.32
44 AT3G04800 translocase inner membrane subunit 23-3 translocase inner membrane subunit
23-3, translocase inner membrane
subunit 23-3		 -0.63 0.33 -0.3
45 AT5G24280 gamma-irradiation and mitomycin c induced 1 GAMMA-IRRADIATION AND MITOMYCIN C
INDUCED 1		 0.63 0.33 -0.32
46 AT2G18960 H(+)-ATPase 1 H(+)-ATPase 1, H(+)-ATPase 1, OPEN
STOMATA 2, PLASMA MEMBRANE PROTON
ATPASE		 0.63 0.3 -0.31
47 AT1G61940 tubby like protein 4 tubby like protein 4, tubby like
protein 4		 0.63 0.32 -0.33
48 AT2G20190 CLIP-associated protein CLIP-ASSOCIATED PROTEIN,
CLIP-associated protein		 0.63 0.33 -0.33
49 AT1G12470 zinc ion binding 0.62 0.31 -0.31
50 AT1G64020 Serine protease inhibitor (SERPIN) family protein 0.62 0.31 -0.32
51 AT2G03520 ureide permease 4 ureide permease 4, ureide permease
4		 0.62 0.32 -0.33
52 AT3G15890 Protein kinase superfamily protein -0.62 0.29 -0.31
53 AT1G58250 Golgi-body localisation protein domain ;RNA pol II promoter
Fmp27 protein domain		 SABRE 0.62 0.32 -0.31
54 AT1G65020 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endoplasmic
reticulum, plasma membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast
hits to 69 proteins in 27 species: Archae - 0; Bacteria -
18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other
Eukaryotes - 7 (source: NCBI BLink).		 -0.62 0.3 -0.31
55 AT5G42570 B-cell receptor-associated 31-like -0.62 0.33 -0.33
56 AT2G07360 SH3 domain-containing protein 0.62 0.3 -0.33
57 AT2G43250 unknown protein; Has 32 Blast hits to 32 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.62 0.31 -0.29
58 AT4G12160 pseudogene, 40S ribosomal protein S9 (RPS9A), ribosomal
protein S9.e - slime mold,PIR1:R3DO24; blastp match of 56%
identity and 7.2e-09 P-value to SP|P17959|RS9_TRYBB
Probable 40S ribosomal protein S9. {Trypanosoma brucei
brucei}		 0.62 0.32 -0.32
59 AT5G63135 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.62 0.33 -0.33
60 AT3G20190 Leucine-rich repeat protein kinase family protein -0.62 0.32 -0.33
61 AT5G65830 receptor like protein 57 receptor like protein 57, receptor
like protein 57		 0.61 0.32 -0.31
62 AT2G25760 Protein kinase family protein 0.61 0.31 -0.31
63 AT1G60350 NAC domain containing protein 24 NAC domain containing protein 24,
NAC domain containing protein 24		 -0.61 0.32 -0.29
64 AT2G32980 unknown protein; Has 158 Blast hits to 154 proteins in 73
species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0;
Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source:
NCBI BLink).		 -0.61 0.31 -0.35
65 AT5G53480 ARM repeat superfamily protein 0.61 0.31 -0.31
66 AT5G01280 BEST Arabidopsis thaliana protein match is: proline-rich
family protein (TAIR:AT3G09000.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.61 0.33 -0.35
67 AT1G05450 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.61 0.31 -0.3
68 AT1G61620 phosphoinositide binding -0.61 0.34 -0.3
69 AT2G13230 transposable element gene 0.61 0.31 -0.32
70 AT2G23080 Protein kinase superfamily protein casein kinase II, alpha chain 3 -0.61 0.31 -0.31
71 AT5G06430 Thioredoxin superfamily protein -0.61 0.31 -0.32
72 AT1G08680 ARF GAP-like zinc finger-containing protein ZIGA4 ARF-GAP domain 14, ARF GAP-like
zinc finger-containing protein
ZIGA4		 0.61 0.31 -0.31
73 AT1G49040 stomatal cytokinesis defective / SCD1 protein (SCD1) STOMATAL CYTOKINESIS-DEFECTIVE 1 0.61 0.31 -0.32
74 AT2G44150 histone-lysine N-methyltransferase ASHH3 histone-lysine N-methyltransferase
ASHH3, SET DOMAIN-CONTAINING
PROTEIN 7		 -0.6 0.31 -0.32
75 AT1G26820 ribonuclease 3 ribonuclease 3 -0.6 0.32 -0.31
76 AT2G27390 proline-rich family protein 0.6 0.32 -0.3
77 AT4G15130 phosphorylcholine cytidylyltransferase2 ATCCT2, phosphorylcholine
cytidylyltransferase2		 -0.6 0.35 -0.32
78 AT4G31960 unknown protein; Has 4 Blast hits to 4 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.6 0.31 -0.33
79 AT4G15200 formin 3 formin 3, formin 3 -0.6 0.31 -0.33
80 AT3G24650 AP2/B3-like transcriptional factor family protein ABA INSENSITIVE 3, ABSCISIC ACID
INSENSITIVE 3, SUGAR INSENSITIVE
10		 0.6 0.32 -0.3
81 AT3G25840 Protein kinase superfamily protein 0.6 0.34 -0.33
82 AT2G35550 basic pentacysteine 7 BASIC PENTACYSTEINE 7, BBR, basic
pentacysteine 7		 0.6 0.34 -0.32
83 AT4G28400 Protein phosphatase 2C family protein -0.6 0.32 -0.32
84 AT5G53480 ARM repeat superfamily protein 0.6 0.32 -0.34
85 AT2G22070 pentatricopeptide (PPR) repeat-containing protein -0.6 0.29 -0.31
86 AT1G27595 CONTAINS InterPro DOMAIN/s: Symplekin tight junction
protein C-terminal (InterPro:IPR022075); BEST Arabidopsis
thaliana protein match is: HEAT repeat-containing protein
(TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in
111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi
- 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345
(source: NCBI BLink).		 0.6 0.29 -0.3
87 AT1G35570 transposable element gene 0.6 0.29 -0.33
88 AT4G16570 protein arginine methyltransferase 7 ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 7,
protein arginine methyltransferase
7		 0.6 0.34 -0.31
89 AT2G44180 methionine aminopeptidase 2A methionine aminopeptidase 2A -0.59 0.33 -0.34
90 AT3G08960 ARM repeat superfamily protein 0.59 0.29 -0.31
91 AT2G19880 Nucleotide-diphospho-sugar transferases superfamily protein 0.59 0.32 -0.31
92 AT3G49070 Protein of unknown function (DUF677) -0.59 0.32 -0.33
93 AT1G22620 Phosphoinositide phosphatase family protein suppressor of actin 1 0.59 0.32 -0.33
94 AT1G31910 GHMP kinase family protein 0.59 0.31 -0.31
95 AT5G08120 movement protein binding protein 2C movement protein binding protein
2C		 -0.59 0.31 -0.31
96 AT3G17430 Nucleotide-sugar transporter family protein 0.59 0.29 -0.32
97 AT1G31760 SWIB/MDM2 domain superfamily protein -0.59 0.33 -0.31
98 AT3G62180 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.59 0.32 -0.3
99 AT4G01920 Cysteine/Histidine-rich C1 domain family protein 0.59 0.34 -0.3
100 AT3G14570 glucan synthase-like 4 glucan synthase-like 4, atgsl4,
gsl04, glucan synthase-like 4		 0.59 0.31 -0.35
101 AT2G29050 RHOMBOID-like 1 RHOMBOID-like 1, RHOMBOID-like 1 -0.59 0.31 -0.31
102 AT5G18580 tonneau 2 (TON2) EMBRYO DEFECTIVE 40, FASS 1, FASS
2, FS1, GORDO, TONNEAU 2		 -0.58 0.32 -0.32
103 AT3G03340 LUC7 related protein unfertilized embryo sac 6 -0.58 0.31 -0.29
104 AT1G01470 Late embryogenesis abundant protein LATE EMBRYOGENESIS ABUNDANT 14,
LIGHT STRESS-REGULATED 3		 -0.58 0.32 -0.31
105 AT4G38960 B-box type zinc finger family protein -0.58 0.3 -0.32
106 AT3G58390 Eukaryotic release factor 1 (eRF1) family protein -0.57 0.31 -0.33
107 AT2G01150 RING-H2 finger protein 2B RING-H2 finger protein 2B -0.57 0.33 -0.28
108 AT4G07540 transposable element gene -0.57 0.3 -0.33
109 AT5G63990 Inositol monophosphatase family protein -0.57 0.32 -0.3
110 AT5G46750 ARF-GAP domain 9 ARF-GAP domain 9 -0.56 0.33 -0.31
111 AT2G24000 serine carboxypeptidase-like 22 serine carboxypeptidase-like 22 -0.56 0.35 -0.29
112 AT2G02120 Scorpion toxin-like knottin superfamily protein LOW-MOLECULAR-WEIGHT CYSTEINE-RICH
70, PDF2.1		 -0.56 0.32 -0.31
113 AT5G25570 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.56 0.3 -0.31
114 AT5G62880 RAC-like 10 RAC-like 10, ARABIDOPSIS THALIANA
RAC-LIKE 10, RHO-RELATED PROTEIN
FROM PLANTS 11, RAC-like 10,
RHO-related protein from plants 11		 -0.56 0.34 -0.32
115 AT4G36790 Major facilitator superfamily protein -0.56 0.3 -0.31
116 AT1G35780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G78150.2); Has 145 Blast hits
to 144 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.3 -0.31
117 AT1G50530 BEST Arabidopsis thaliana protein match is:
Calcium-dependent lipid-binding (CaLB domain) family
protein (TAIR:AT1G50570.2); Has 10 Blast hits to 10
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.56 0.31 -0.31
118 AT2G21100 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.56 0.33 -0.32
119 AT3G61340 F-box and associated interaction domains-containing protein -0.56 0.32 -0.31
120 AT3G44080 F-box family protein -0.56 0.31 -0.33
121 AT4G01740 Cysteine/Histidine-rich C1 domain family protein -0.56 0.32 -0.31
122 AT5G59950 RNA-binding (RRM/RBD/RNP motifs) family protein -0.56 0.32 -0.31
123 AT1G76900 tubby like protein 1 tubby like protein 1, tubby like
protein 1		 -0.55 0.3 -0.31
124 AT4G33900 Galactose oxidase/kelch repeat superfamily protein -0.55 0.3 -0.32
125 AT1G35647 transposable element gene -0.55 0.32 -0.32
126 AT1G41820 unknown protein; Has 46 Blast hits to 46 proteins in 21
species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 2;
Plants - 5; Viruses - 1; Other Eukaryotes - 24 (source:
NCBI BLink).		 -0.55 0.32 -0.31
127 AT5G62165 AGAMOUS-like 42 AGAMOUS-like 42, FOREVER YOUNG
FLOWER		 -0.54 0.31 -0.31
128 AT3G09735 S1FA-like DNA-binding protein -0.54 0.33 -0.33
129 AT5G02140 Pathogenesis-related thaumatin superfamily protein -0.54 0.32 -0.32
130 AT2G17620 Cyclin B2;1 Cyclin B2;1 -0.54 0.34 -0.32
131 AT5G52140 RING/U-box superfamily protein -0.54 0.34 -0.32
132 AT1G61070 low-molecular-weight cysteine-rich 66 low-molecular-weight cysteine-rich
66, PLANT DEFENSIN 2.4		 -0.54 0.32 -0.33
133 AT2G09840 BEST Arabidopsis thaliana protein match is: nucleic acid
binding;zinc ion binding (TAIR:AT2G06904.1); Has 10 Blast
hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.53 0.33 -0.33
134 AT5G01950 Leucine-rich repeat protein kinase family protein -0.53 0.31 -0.32
135 AT4G21090 MITOCHONDRIAL FERREDOXIN 2 ARABIDOPSIS MITOCHONDRIAL
FERREDOXIN 2, MITOCHONDRIAL
FERREDOXIN 2		 -0.53 0.3 -0.31
136 AT2G26810 Putative methyltransferase family protein -0.53 0.32 -0.33
137 AT1G25510 Eukaryotic aspartyl protease family protein -0.53 0.32 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
138 C0096 Gluconic acid - D-Gluconate - 0.62 0.45 -0.44 C0096
139 C0195 Phenylpyruvic acid - Phenylpyruvate phenylalanine degradation III -0.61 0.42 -0.46 C0195
140 C0015 p-Coumaric acid - 4-Coumarate scopoletin biosynthesis,
free phenylpropanoid acid biosynthesis,
phenylpropanoid biosynthesis,
simple coumarins biosynthesis,
4-hydroxybenzoate biosynthesis V,
suberin biosynthesis,
phenylpropanoid biosynthesis, initial reactions,
flavonoid biosynthesis 		-0.61 0.48 -0.42 C0015