AT3G04550 : -
Query Information
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AGICode AT3G04550
Description unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G04550 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in
51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi -
0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 1 0.32 -0.3
2 AT5G07900 Mitochondrial transcription termination factor family
protein		 0.83 0.33 -0.31
3 AT4G16390 pentatricopeptide (PPR) repeat-containing protein suppressor of variegation 7 0.83 0.3 -0.32
4 AT1G15690 Inorganic H pyrophosphatase family protein ARABIDOPSIS THALIANA V-PPASE 3,
AtVHP1;1, AVP-3, AVP1, FUGU 5		 0.82 0.33 -0.32
5 AT2G40980 Protein kinase superfamily protein 0.81 0.3 -0.32
6 AT5G55580 Mitochondrial transcription termination factor family
protein		 0.81 0.34 -0.32
7 AT2G25970 KH domain-containing protein 0.8 0.31 -0.31
8 AT4G39960 Molecular chaperone Hsp40/DnaJ family protein 0.8 0.34 -0.3
9 AT2G47840 Uncharacterised conserved protein ycf60 translocon at the inner envelope
membrane of chloroplasts 20-II,
translocon at the inner envelope
membrane of chloroplasts 20-II		 0.8 0.3 -0.32
10 AT1G80480 plastid transcriptionally active 17 plastid transcriptionally active
17		 0.79 0.31 -0.31
11 AT3G56150 eukaryotic translation initiation factor 3C ATEIF3C-1, ATTIF3C1, eukaryotic
translation initiation factor 3C,
EIF3C-1, TIF3C1		 0.79 0.34 -0.3
12 AT5G17840 DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.79 0.31 -0.32
13 AT4G28590 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10
growth stages; BEST Arabidopsis thaliana protein match is:
Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114
Blast hits to 112 proteins in 39 species: Archae - 2;
Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses
- 0; Other Eukaryotes - 22 (source: NCBI BLink).		 Mesophyll-cell RNAi Library line 7 0.78 0.32 -0.31
14 AT2G16800 high-affinity nickel-transport family protein 0.78 0.31 -0.31
15 AT1G24440 RING/U-box superfamily protein -0.78 0.33 -0.33
16 AT1G73710 Pentatricopeptide repeat (PPR) superfamily protein 0.78 0.31 -0.3
17 AT3G25140 Nucleotide-diphospho-sugar transferases superfamily protein GALACTURONOSYLTRANSFERASE 8,
QUASIMODO 1		 0.77 0.31 -0.32
18 AT1G47530 MATE efflux family protein 0.76 0.3 -0.31
19 AT3G02250 O-fucosyltransferase family protein 0.75 0.29 -0.32
20 AT1G26440 ureide permease 5 ureide permease 5, UPS5, ureide
permease 5		 -0.75 0.33 -0.32
21 AT3G20440 Alpha amylase family protein BRANCHING ENZYME 1, EMBRYO
DEFECTIVE 2729		 0.75 0.32 -0.32
22 AT1G51940 protein kinase family protein / peptidoglycan-binding LysM
domain-containing protein		 0.75 0.3 -0.32
23 AT5G58900 Homeodomain-like transcriptional regulator 0.75 0.31 -0.33
24 AT3G06200 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.74 0.36 -0.33
25 AT1G08880 Histone superfamily protein GAMMA H2AX, gamma histone variant
H2AX, H2AXA, histone H2A 5		 0.74 0.32 -0.31
26 AT1G21540 AMP-dependent synthetase and ligase family protein 0.74 0.28 -0.31
27 AT4G02510 translocon at the outer envelope membrane of chloroplasts
159		 ATTOC159, PLASTID PROTEIN IMPORT
2, translocon at the outer
envelope membrane of chloroplasts
159, TRANSLOCON AT THE OUTER
ENVELOPE MEMBRANE OF CHLOROPLASTS
160, TRANSLOCON AT THE OUTER
ENVELOPE MEMBRANE OF CHLOROPLASTS
86		 0.74 0.32 -0.3
28 AT3G53700 Pentatricopeptide repeat (PPR) superfamily protein maternal effect embryo arrest 40 0.74 0.29 -0.33
29 AT5G14920 Gibberellin-regulated family protein 0.74 0.34 -0.31
30 AT2G39920 HAD superfamily, subfamily IIIB acid phosphatase 0.74 0.31 -0.31
31 AT1G80000 CASC3/Barentsz eIF4AIII binding 0.74 0.32 -0.32
32 AT1G45230 Protein of unknown function (DUF3223) 0.73 0.3 -0.31
33 AT3G05420 acyl-CoA binding protein 4 acyl-CoA binding protein 4 0.73 0.32 -0.32
34 AT2G29900 Presenilin-2 Presenilin-2 0.73 0.32 -0.31
35 AT2G35620 Leucine-rich repeat protein kinase family protein FEI 2 0.73 0.29 -0.32
36 AT1G08610 Pentatricopeptide repeat (PPR) superfamily protein 0.73 0.32 -0.32
37 AT1G48650 DEA(D/H)-box RNA helicase family protein 0.72 0.31 -0.3
38 AT4G04330 Chaperonin-like RbcX protein AtRbcX1, homologue of
cyanobacterial RbcX 1		 0.72 0.31 -0.33
39 AT5G64640 Plant invertase/pectin methylesterase inhibitor superfamily 0.72 0.33 -0.32
40 AT5G61040 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G08010.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.72 0.3 -0.31
41 AT5G44785 organellar single-stranded DNA binding protein 3 organellar single-stranded DNA
binding protein 3		 0.72 0.29 -0.34
42 AT3G54400 Eukaryotic aspartyl protease family protein 0.72 0.33 -0.29
43 AT4G08940 Ubiquitin carboxyl-terminal hydrolase family protein 0.71 0.32 -0.33
44 AT5G49830 exocyst complex component 84B exocyst complex component 84B 0.71 0.3 -0.31
45 AT4G18520 Pentatricopeptide repeat (PPR) superfamily protein 0.71 0.32 -0.29
46 AT3G18380 sequence-specific DNA binding transcription
factors;sequence-specific DNA binding		 SAWADEE homeodomain homolog 2 0.71 0.3 -0.32
47 AT5G28300 Duplicated homeodomain-like superfamily protein 0.71 0.3 -0.31
48 AT4G39235 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.71 0.29 -0.34
49 AT5G07320 Mitochondrial substrate carrier family protein ATP/phosphate carrier 3 0.7 0.33 -0.3
50 AT2G28720 Histone superfamily protein 0.7 0.29 -0.31
51 AT1G26850 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.7 0.31 -0.3
52 AT1G56180 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G27290.1); Has 436 Blast hits to 436 proteins in
83 species: Archae - 0; Bacteria - 153; Metazoa - 0; Fungi
- 0; Plants - 160; Viruses - 0; Other Eukaryotes - 123
(source: NCBI BLink).		 0.7 0.3 -0.3
53 AT3G23810 S-adenosyl-l-homocysteine (SAH) hydrolase 2 S-ADENOSYL-L-HOMOCYSTEINE (SAH)
HYDROLASE 2,
S-adenosyl-l-homocysteine (SAH)
hydrolase 2		 0.7 0.31 -0.32
54 AT5G09320 Vacuolar sorting protein 9 (VPS9) domain VPS9B 0.7 0.32 -0.31
55 AT5G14650 Pectin lyase-like superfamily protein -0.68 0.3 -0.32
56 AT2G40110 Yippee family putative zinc-binding protein -0.68 0.32 -0.3
57 AT3G59660 C2 domain-containing protein / GRAM domain-containing
protein		 -0.68 0.35 -0.32
58 AT1G35350 EXS (ERD1/XPR1/SYG1) family protein -0.68 0.33 -0.29
59 AT1G32920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to wounding; LOCATED IN: endomembrane
system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G32928.1); Has 42 Blast
hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.68 0.33 -0.3
60 AT1G05710 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.67 0.3 -0.33
61 AT5G64240 metacaspase 3 metacaspase 3, metacaspase 1a,
metacaspase 3, metacaspase 1a		 -0.66 0.33 -0.31
62 AT1G22380 UDP-glucosyl transferase 85A3 UDP-glucosyl transferase 85A3,
UDP-glucosyl transferase 85A3		 -0.65 0.32 -0.31
63 AT2G42760 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1685 (InterPro:IPR012881); Has 170
Blast hits to 164 proteins in 34 species: Archae - 0;
Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107;
Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).		 -0.65 0.32 -0.31
64 AT5G45110 NPR1-like protein 3 ATNPR3, NPR1-like protein 3 -0.65 0.33 -0.3
65 AT2G23320 WRKY DNA-binding protein 15 WRKY DNA-binding protein 15 -0.65 0.33 -0.35
66 AT5G62570 Calmodulin binding protein-like -0.64 0.31 -0.29
67 AT5G60890 myb domain protein 34 ATMYB34, ALTERED TRYPTOPHAN
REGULATION 1, myb domain protein
34		 -0.64 0.32 -0.31
68 AT2G18620 Terpenoid synthases superfamily protein -0.62 0.32 -0.31
69 AT1G59590 ZCF37 ZCF37 -0.62 0.31 -0.34
70 AT5G52050 MATE efflux family protein -0.61 0.3 -0.34
71 AT4G38240 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative		 COMPLEX GLYCAN LESS, COMPLEX
GLYCAN LESS 1,
N-ACETYLGLUCOSAMINYLTRANSFERASE I		 -0.6 0.32 -0.3
72 AT3G21260 Glycolipid transfer protein (GLTP) family protein GLYCOLIPID TRANSFER PROTEIN 3 -0.6 0.32 -0.32
73 AT1G77660 Histone H3 K4-specific methyltransferase SET7/9 family
protein		 -0.6 0.29 -0.32
74 AT1G28130 Auxin-responsive GH3 family protein GH3.17 -0.6 0.32 -0.3
75 AT1G76600 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
nucleolus, nucleus; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G21010.1); Has 220 Blast hits to 220 proteins in
14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.29 -0.29
76 AT5G37990 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.59 0.32 -0.33
77 AT2G35380 Peroxidase superfamily protein -0.59 0.33 -0.31
78 AT5G05300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 10 plant structures;
EXPRESSED DURING: 8 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.59 0.31 -0.3
79 AT2G15240 UNC-50 family protein -0.58 0.35 -0.32
80 AT5G57560 Xyloglucan endotransglucosylase/hydrolase family protein Touch 4, xyloglucan
endotransglucosylase/hydrolase 22		 -0.58 0.3 -0.31
81 AT5G05980 DHFS-FPGS homolog B DHFS-FPGS homolog B, DHFS-FPGS
homolog B, folylpolyglutamate
synthetase 1		 -0.58 0.32 -0.32
82 AT4G04320 malonyl-CoA decarboxylase family protein -0.57 0.3 -0.3
83 AT5G22570 WRKY DNA-binding protein 38 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 38, WRKY
DNA-binding protein 38		 -0.57 0.32 -0.32
84 AT5G09480 hydroxyproline-rich glycoprotein family protein -0.57 0.29 -0.34
85 AT2G24550 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G31510.1); Has 219 Blast hits
to 219 proteins in 33 species: Archae - 0; Bacteria - 0;
Metazoa - 16; Fungi - 2; Plants - 184; Viruses - 0; Other
Eukaryotes - 17 (source: NCBI BLink).		 -0.57 0.31 -0.29
86 AT2G34560 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.57 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
87 C0134 Kaempferol-7-O-neohesperidoside - - - 0.84 0.43 -0.46