AT3G04650 : -
Query Information
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AGICode AT3G04650
Description FAD/NAD(P)-binding oxidoreductase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G04650 FAD/NAD(P)-binding oxidoreductase family protein 1 0.32 -0.3
2 AT1G06190 Rho termination factor 0.94 0.32 -0.31
3 AT1G56050 GTP-binding protein-related 0.94 0.3 -0.31
4 AT3G13470 TCP-1/cpn60 chaperonin family protein chaperonin-60beta2 0.93 0.31 -0.29
5 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.93 0.34 -0.31
6 AT1G11430 plastid developmental protein DAG, putative 0.92 0.34 -0.33
7 AT4G02990 Mitochondrial transcription termination factor family
protein		 BELAYA SMERT, RUGOSA 2 0.91 0.32 -0.33
8 AT4G28660 photosystem II reaction center PSB28 protein photosystem II reaction center
PSB28 protein		 0.9 0.3 -0.31
9 AT3G53460 chloroplast RNA-binding protein 29 chloroplast RNA-binding protein 29 0.9 0.3 -0.3
10 AT5G48630 Cyclin family protein 0.9 0.33 -0.32
11 AT2G33180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57
proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa -
0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
14 (source: NCBI BLink).		 0.9 0.32 -0.31
12 AT1G55490 chaperonin 60 beta chaperonin 60 beta,
chaperonin-60beta1, LESION
INITIATION 1		 0.89 0.33 -0.35
13 AT2G03420 unknown protein; Has 38 Blast hits to 38 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.89 0.33 -0.29
14 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.89 0.33 -0.34
15 AT2G39670 Radical SAM superfamily protein 0.89 0.3 -0.33
16 AT1G21600 plastid transcriptionally active 6 plastid transcriptionally active 6 0.89 0.33 -0.32
17 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.89 0.3 -0.31
18 AT4G25050 acyl carrier protein 4 acyl carrier protein 4 0.88 0.29 -0.31
19 AT3G58610 ketol-acid reductoisomerase 0.88 0.32 -0.3
20 AT2G41950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 53
Blast hits to 53 proteins in 24 species: Archae - 0;
Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.88 0.32 -0.3
21 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.88 0.33 -0.31
22 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.88 0.33 -0.31
23 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.88 0.31 -0.31
24 AT5G07900 Mitochondrial transcription termination factor family
protein		 0.88 0.34 -0.29
25 AT2G24060 Translation initiation factor 3 protein 0.88 0.32 -0.33
26 AT4G16390 pentatricopeptide (PPR) repeat-containing protein suppressor of variegation 7 0.88 0.32 -0.3
27 AT4G37510 Ribonuclease III family protein 0.88 0.32 -0.31
28 AT3G15850 fatty acid desaturase 5 ADS3, fatty acid desaturase 5,
FATTY ACID DESATURASE B, JB67		 0.87 0.3 -0.3
29 AT5G23310 Fe superoxide dismutase 3 Fe superoxide dismutase 3 0.87 0.31 -0.32
30 AT3G49470 nascent polypeptide-associated complex subunit alpha-like
protein 2		 nascent polypeptide-associated
complex subunit alpha-like protein
2		 0.87 0.32 -0.33
31 AT1G33040 nascent polypeptide-associated complex subunit alpha-like
protein 5		 nascent polypeptide-associated
complex subunit alpha-like protein
5		 0.87 0.31 -0.32
32 AT3G21300 RNA methyltransferase family protein 0.87 0.31 -0.32
33 AT2G14880 SWIB/MDM2 domain superfamily protein 0.87 0.32 -0.32
34 AT4G25990 CCT motif family protein CIL 0.87 0.31 -0.31
35 AT2G21385 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.87 0.33 -0.32
36 AT3G08740 elongation factor P (EF-P) family protein 0.86 0.31 -0.32
37 AT2G28000 chaperonin-60alpha CHLOROPLAST CHAPERONIN 60ALPHA,
chaperonin-60alpha,
chaperonin-60alpha1, SCHLEPPERLESS		 0.86 0.31 -0.32
38 AT1G10510 RNI-like superfamily protein embryo defective 2004 0.86 0.32 -0.3
39 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.86 0.34 -0.33
40 AT3G10520 haemoglobin 2 haemoglobin 2, ARATH GLB2,
ARABIDOPSIS HEMOGLOBIN 2,
HEMOGLOBIN 2, haemoglobin 2,
NON-SYMBIOTIC HAEMOGLOBIN 2		 0.86 0.31 -0.31
41 AT3G60370 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.86 0.3 -0.31
42 AT3G52380 chloroplast RNA-binding protein 33 chloroplast RNA-binding protein
33, PIGMENT DEFECTIVE 322		 0.86 0.32 -0.31
43 AT2G02740 ssDNA-binding transcriptional regulator A. THALIANA WHIRLY 3, PLASTID
TRANSCRIPTIONALLY ACTIVE11, WHIRLY
3		 0.86 0.33 -0.31
44 AT4G28210 embryo defective 1923 embryo defective 1923 0.86 0.31 -0.31
45 AT1G60230 Radical SAM superfamily protein 0.86 0.31 -0.34
46 AT2G17972 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 14 growth stages;
Has 34 Blast hits to 34 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.86 0.3 -0.32
47 AT2G23670 homolog of Synechocystis YCF37 homolog of Synechocystis YCF37 0.86 0.32 -0.33
48 AT1G16790 ribosomal protein-related 0.86 0.31 -0.3
49 AT5G11270 overexpressor of cationic peroxidase 3 overexpressor of cationic
peroxidase 3		 0.86 0.32 -0.3
50 AT2G40760 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.85 0.32 -0.31
51 AT5G48220 Aldolase-type TIM barrel family protein 0.85 0.3 -0.29
52 AT1G26570 UDP-glucose dehydrogenase 1 UDP-GLUCOSE DEHYDROGENASE 1,
UDP-glucose dehydrogenase 1		 0.85 0.33 -0.3
53 AT2G20020 RNA-binding CRS1 / YhbY (CRM) domain-containing protein ATCAF1, CAF1 0.85 0.31 -0.32
54 AT1G48460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.85 0.32 -0.32
55 AT5G41050 Pollen Ole e 1 allergen and extensin family protein 0.85 0.34 -0.31
56 AT1G10960 ferredoxin 1 ferredoxin 1, ferredoxin 1 0.85 0.33 -0.33
57 AT5G08400 Protein of unknown function (DUF3531) 0.85 0.32 -0.31
58 AT3G06980 DEA(D/H)-box RNA helicase family protein 0.85 0.34 -0.3
59 AT3G13740 Ribonuclease III family protein 0.85 0.33 -0.32
60 AT5G64816 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.84 0.29 -0.31
61 AT5G19750 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 0.84 0.33 -0.32
62 AT1G24360 NAD(P)-binding Rossmann-fold superfamily protein 0.84 0.3 -0.33
63 AT5G20040 isopentenyltransferase 9 ARABIDOPSIS THALIANA
ISOPENTENYLTRANSFERASE 9,
isopentenyltransferase 9		 0.84 0.32 -0.3
64 AT1G33810 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast, chloroplast
envelope; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 39 Blast hits to 39 proteins
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.84 0.33 -0.35
65 AT5G47630 mitochondrial acyl carrier protein 3 mitochondrial acyl carrier protein
3		 0.84 0.3 -0.33
66 AT1G52080 actin binding protein family AR791 -0.84 0.31 -0.31
67 AT5G20720 chaperonin 20 ATCPN21, CHLOROPLAST CHAPERONIN
10, CHLOROPLAST CHAPERONIN 10,
chaperonin 20, CPN21		 0.84 0.33 -0.33
68 AT1G72610 germin-like protein 1 A. THALIANA GERMIN-LIKE PROTEIN 1,
germin-like protein 1, GERMIN-LIKE
PROTEIN 1		 0.84 0.33 -0.32
69 AT2G42890 MEI2-like 2 MEI2-like 2, MEI2-like 2 -0.84 0.31 -0.31
70 AT4G39960 Molecular chaperone Hsp40/DnaJ family protein 0.84 0.33 -0.3
71 AT3G25860 2-oxoacid dehydrogenases acyltransferase family protein LTA2, PLASTID E2 SUBUNIT OF
PYRUVATE DECARBOXYLASE		 0.84 0.32 -0.31
72 AT1G70200 RNA-binding (RRM/RBD/RNP motifs) family protein 0.84 0.29 -0.29
73 AT1G09900 Pentatricopeptide repeat (PPR-like) superfamily protein 0.84 0.33 -0.31
74 AT2G47840 Uncharacterised conserved protein ycf60 translocon at the inner envelope
membrane of chloroplasts 20-II,
translocon at the inner envelope
membrane of chloroplasts 20-II		 0.84 0.32 -0.32
75 AT3G23710 Tic22-like family protein translocon at the inner envelope
membrane of chloroplasts 22-III,
translocon at the inner envelope
membrane of chloroplasts 22-III		 0.84 0.3 -0.33
76 AT5G17710 Co-chaperone GrpE family protein embryo defective 1241 0.84 0.33 -0.33
77 AT1G51100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 26
Blast hits to 26 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.84 0.33 -0.3
78 AT5G20630 germin 3 ARABIDOPSIS THALIANA GERMIN 3,
germin 3, GERMIN-LIKE PROTEIN 3,
GLP3A, GLP3B		 0.84 0.3 -0.33
79 AT3G49490 unknown protein; Has 722 Blast hits to 186 proteins in 64
species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi -
48; Plants - 38; Viruses - 0; Other Eukaryotes - 534
(source: NCBI BLink).		 -0.82 0.32 -0.33
80 AT3G03310 lecithin:cholesterol acyltransferase 3 ARABIDOPSIS LECITHIN:CHOLESTEROL
ACYLTRANSFERASE 3,
lecithin:cholesterol
acyltransferase 3		 -0.79 0.31 -0.32
81 AT2G18480 Major facilitator superfamily protein -0.78 0.33 -0.3
82 AT5G54080 homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase -0.78 0.3 -0.32
83 AT5G02230 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.77 0.3 -0.29
84 AT5G02170 Transmembrane amino acid transporter family protein -0.76 0.29 -0.33
85 AT5G40690 CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site
(InterPro:IPR018247); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G41730.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.73 0.34 -0.33
86 AT4G16110 response regulator 2 response regulator 2, response
regulator 2		 -0.71 0.32 -0.31
87 AT2G32830 phosphate transporter 1;5 phosphate transporter 1;5,
PHOSPHATE TRANSPORTER 5		 -0.7 0.29 -0.33
88 AT2G40110 Yippee family putative zinc-binding protein -0.68 0.3 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
89 C0014 O-Acetylserine O-Acetyl-L-serine O-Acetyl-L-serine cysteine biosynthesis I,
seleno-amino acid biosynthesis 		-0.68 0.31 -0.29 C0014
90 C0260 Tyrosine L-(-)-Tyrosine L-Tyrosine tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis 		-0.68 0.3 -0.31 C0260