AT3G06300 : P4H isoform 2
Query Information
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AGICode AT3G06300
Description P4H isoform 2
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G06300 P4H isoform 2 P4H isoform 2, prolyl
4-hydroxylase 2		 1 0.31 -0.32
2 AT3G09490 Tetratricopeptide repeat (TPR)-like superfamily protein 0.78 0.32 -0.32
3 AT4G12550 Auxin-Induced in Root cultures 1 Auxin-Induced in Root cultures 1 0.74 0.31 -0.3
4 AT1G15040 Class I glutamine amidotransferase-like superfamily protein 0.74 0.33 -0.31
5 AT5G05460 Glycosyl hydrolase family 85 AtENGase85A,
Endo-beta-N-acetyglucosaminidase
85A		 0.74 0.3 -0.35
6 ATCG01100 NADH dehydrogenase family protein NDHA -0.73 0.31 -0.29
7 ATCG00160 ribosomal protein S2 ribosomal protein S2 -0.72 0.33 -0.32
8 AT1G13300 myb-like transcription factor family protein HYPERSENSITIVITY TO LOW
PI-ELICITED PRIMARY ROOT
SHORTENING 1		 0.72 0.34 -0.3
9 AT3G52920 Family of unknown function (DUF662) -0.71 0.32 -0.33
10 AT4G21850 methionine sulfoxide reductase B9 methionine sulfoxide reductase B9,
methionine sulfoxide reductase B9		 0.71 0.31 -0.31
11 ATCG00360 Tetratricopeptide repeat (TPR)-like superfamily protein YCF3 -0.71 0.33 -0.31
12 ATCG00710 photosystem II reaction center protein H photosystem II reaction center
protein H		 -0.71 0.32 -0.31
13 ATCG00270 photosystem II reaction center protein D photosystem II reaction center
protein D		 -0.71 0.29 -0.31
14 AT2G37130 Peroxidase superfamily protein 0.7 0.32 -0.3
15 ATCG00520 unfolded protein binding YCF4 -0.7 0.31 -0.3
16 AT5G08160 serine/threonine protein kinase 3 serine/threonine protein kinase 3,
serine/threonine protein kinase 3		 0.7 0.32 -0.3
17 ATCG00340 Photosystem I, PsaA/PsaB protein PSAB -0.7 0.32 -0.29
18 ATCG00690 photosystem II reaction center protein T photosystem II reaction center
protein T, PSBTC		 -0.7 0.3 -0.31
19 AT3G25670 Leucine-rich repeat (LRR) family protein -0.69 0.33 -0.31
20 ATCG00720 photosynthetic electron transfer B photosynthetic electron transfer B -0.68 0.31 -0.34
21 ATCG00530 CemA-like proton extrusion protein-related YCF10 -0.68 0.33 -0.3
22 AT3G45900 Ribonuclease P protein subunit P38-related -0.68 0.31 -0.33
23 AT2G35610 xyloglucanase 113 xyloglucanase 113 0.68 0.32 -0.32
24 ATCG01090 NADPH dehydrogenases NDHI -0.68 0.33 -0.31
25 AT4G18270 translocase 11 ARABIDOPSIS THALIANA TRANSLOCASE
11, translocase 11		 -0.68 0.32 -0.32
26 AT2G19570 cytidine deaminase 1 AT-CDA1, cytidine deaminase 1,
DESZ		 0.67 0.32 -0.33
27 AT4G35300 tonoplast monosaccharide transporter2 tonoplast monosaccharide
transporter2		 -0.67 0.29 -0.3
28 ATCG00420 NADH dehydrogenase subunit J NADH dehydrogenase subunit J -0.67 0.3 -0.32
29 AT5G57610 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 -0.67 0.31 -0.31
30 AT5G42270 FtsH extracellular protease family FTSH5, VARIEGATED 1 -0.67 0.32 -0.31
31 AT3G05580 Calcineurin-like metallo-phosphoesterase superfamily
protein		 type one protein phosphatase 9 0.67 0.31 -0.32
32 AT1G29700 Metallo-hydrolase/oxidoreductase superfamily protein -0.66 0.3 -0.33
33 ATCG00430 photosystem II reaction center protein G photosystem II reaction center
protein G		 -0.66 0.31 -0.29
34 AT1G21890 nodulin MtN21 /EamA-like transporter family protein -0.66 0.32 -0.32
35 AT4G18430 RAB GTPase homolog A1E RAB GTPase homolog A1E, RAB GTPase
homolog A1E		 0.66 0.32 -0.34
36 AT3G14840 Leucine-rich repeat transmembrane protein kinase 0.66 0.31 -0.32
37 ATCG00680 photosystem II reaction center protein B photosystem II reaction center
protein B		 -0.66 0.29 -0.32
38 AT2G14900 Gibberellin-regulated family protein 0.66 0.31 -0.3
39 AT4G24830 arginosuccinate synthase family 0.66 0.33 -0.29
40 AT1G63420 Arabidopsis thaliana protein of unknown function (DUF821) -0.65 0.31 -0.33
41 AT5G20270 heptahelical transmembrane protein1 heptahelical transmembrane
protein1		 -0.65 0.33 -0.33
42 AT2G01820 Leucine-rich repeat protein kinase family protein -0.65 0.31 -0.3
43 ATCG00780 ribosomal protein L14 ribosomal protein L14 -0.65 0.31 -0.31
44 AT3G13760 Cysteine/Histidine-rich C1 domain family protein 0.65 0.32 -0.33
45 AT1G12990 beta-1,4-N-acetylglucosaminyltransferase family protein -0.65 0.31 -0.33
46 AT5G42720 Glycosyl hydrolase family 17 protein -0.65 0.3 -0.31
47 AT4G36670 Major facilitator superfamily protein AtPLT6, AtPMT6, polyol transporter
6, polyol/monosaccharide
transporter 6		 0.65 0.32 -0.31
48 AT2G09910 transposable element gene -0.65 0.33 -0.3
49 ATCG00590 electron carriers ORF31 -0.65 0.33 -0.31
50 AT2G21045 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.65 0.33 -0.3
51 ATCG01070 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NDHE -0.65 0.34 -0.33
52 AT1G22160 Protein of unknown function (DUF581) -0.65 0.33 -0.3
53 AT2G41540 6-phosphogluconate dehydrogenase family protein GPDHC1 -0.65 0.31 -0.31
54 AT4G34680 GATA transcription factor 3 GATA transcription factor 3 -0.65 0.32 -0.31
55 AT4G15390 HXXXD-type acyl-transferase family protein 0.65 0.29 -0.32
56 AT1G05180 NAD(P)-binding Rossmann-fold superfamily protein AUXIN RESISTANT 1 0.64 0.3 -0.31
57 AT5G01500 thylakoid ATP/ADP carrier thylakoid ATP/ADP carrier 0.64 0.3 -0.32
58 AT2G34140 Dof-type zinc finger DNA-binding family protein 0.64 0.33 -0.32
59 AT1G80830 natural resistance-associated macrophage protein 1 ATNRAMP1, natural
resistance-associated macrophage
protein 1, PMIT1		 0.64 0.32 -0.33
60 AT1G48100 Pectin lyase-like superfamily protein -0.64 0.32 -0.32
61 AT1G06690 NAD(P)-linked oxidoreductase superfamily protein -0.64 0.32 -0.31
62 AT1G26940 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.64 0.3 -0.31
63 AT1G22500 RING/U-box superfamily protein Arabidopsis thaliana Arabidopsis
toxicos en levadura 15,
Arabidopsis toxicos en levadura 15		 0.64 0.31 -0.32
64 AT1G09090 respiratory burst oxidase homolog B respiratory burst oxidase homolog
B, ATRBOHB-BETA, respiratory burst
oxidase homolog B		 0.64 0.32 -0.32
65 ATCG00120 ATP synthase subunit alpha ATP synthase subunit alpha -0.64 0.32 -0.32
66 AT5G47020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.64 0.32 -0.3
67 ATCG01110 NAD(P)H dehydrogenase subunit H NAD(P)H dehydrogenase subunit H -0.64 0.31 -0.29
68 AT1G62790 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.64 0.32 -0.29
69 AT5G60530 late embryogenesis abundant protein-related / LEA
protein-related		 0.64 0.32 -0.3
70 ATCG01050 NADH-Ubiquinone/plastoquinone (complex I) protein NDHD -0.64 0.3 -0.32
71 AT5G35970 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.64 0.32 -0.31
72 AT2G43800 Actin-binding FH2 (formin homology 2) family protein -0.64 0.3 -0.31
73 AT1G52070 Mannose-binding lectin superfamily protein 0.63 0.3 -0.32
74 AT2G18890 Protein kinase superfamily protein -0.63 0.31 -0.31
75 AT1G21370 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF218 (InterPro:IPR003848); Has 160 Blast
hits to 160 proteins in 86 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 102; Plants - 44; Viruses - 0;
Other Eukaryotes - 14 (source: NCBI BLink).		 0.63 0.3 -0.33
76 ATCG00170 DNA-directed RNA polymerase family protein RPOC2 -0.63 0.34 -0.33
77 AT2G20400 myb-like HTH transcriptional regulator family protein -0.63 0.32 -0.3
78 ATCG00700 photosystem II reaction center protein N photosystem II reaction center
protein N		 -0.63 0.32 -0.32
79 AT5G43880 Protein of unknown function (DUF3741) -0.63 0.3 -0.31
80 AT3G02130 receptor-like protein kinase 2 clv3 peptide insensitive 1,
receptor-like protein kinase 2,
TOADSTOOL 2		 -0.63 0.31 -0.31
81 AT5G42860 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 11 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G45688.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.63 0.32 -0.32
82 ATCG00820 ribosomal protein S19 ribosomal protein S19 -0.63 0.33 -0.31
83 ATCG01120 chloroplast ribosomal protein S15 chloroplast ribosomal protein S15 -0.63 0.31 -0.35
84 AT5G64080 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 AtXYP1, xylogen protein 1 -0.63 0.31 -0.33
85 AT5G23830 MD-2-related lipid recognition domain-containing protein 0.62 0.32 -0.33
86 AT3G24715 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 -0.62 0.32 -0.31
87 AT5G04310 Pectin lyase-like superfamily protein 0.62 0.32 -0.33
88 ATCG00510 photsystem I subunit I photsystem I subunit I -0.62 0.32 -0.32
89 ATCG00790 ribosomal protein L16 ribosomal protein L16 -0.62 0.32 -0.32
90 AT2G43600 Chitinase family protein 0.62 0.32 -0.3
91 AT2G34460 NAD(P)-binding Rossmann-fold superfamily protein -0.62 0.31 -0.31
92 AT2G28330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G08035.1); Has 18 Blast hits
to 18 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.33 -0.32
93 AT5G26260 TRAF-like family protein 0.62 0.3 -0.33
94 ATCG00380 chloroplast ribosomal protein S4 chloroplast ribosomal protein S4 -0.62 0.3 -0.31
95 AT5G54740 seed storage albumin 5 seed storage albumin 5 -0.61 0.33 -0.32
96 AT1G12820 auxin signaling F-box 3 auxin signaling F-box 3 -0.61 0.29 -0.31
97 AT1G06160 octadecanoid-responsive Arabidopsis AP2/ERF 59 octadecanoid-responsive
Arabidopsis AP2/ERF 59		 0.61 0.34 -0.31
98 AT5G28920 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.61 0.3 -0.3
99 AT5G58590 RAN binding protein 1 RAN binding protein 1 0.61 0.29 -0.31
100 AT4G32690 hemoglobin 3 ARABIDOPSIS HEMOGLOBIN 3,
hemoglobin 3		 0.61 0.33 -0.32
101 AT5G45510 Leucine-rich repeat (LRR) family protein 0.61 0.3 -0.32
102 AT5G02030 POX (plant homeobox) family protein BEL1-LIKE HOMEODOMAIN 9,
BELLRINGER, HB-6, LARSON,
PENNYWISE, REPLUMLESS, VAAMANA		 -0.61 0.31 -0.34
103 AT3G60240 eukaryotic translation initiation factor 4G CUCUMOVIRUS MULTIPLICATION 2,
eukaryotic translation initiation
factor 4G		 -0.61 0.33 -0.31
104 AT5G14510 ARM repeat superfamily protein -0.61 0.31 -0.31
105 AT1G05630 Endonuclease/exonuclease/phosphatase family protein 5PTASE13, AT5PTASE13 -0.6 0.32 -0.31
106 AT1G53210 sodium/calcium exchanger family protein / calcium-binding
EF hand family protein		 -0.6 0.33 -0.31
107 ATCG00490 ribulose-bisphosphate carboxylases RBCL -0.6 0.32 -0.31
108 AT5G58870 FTSH protease 9 FTSH protease 9 -0.6 0.3 -0.31
109 AT5G08240 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G23160.1); Has 69 Blast hits
to 69 proteins in 10 species: Archae - 0; Bacteria - 1;
Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.6 0.31 -0.3
110 AT5G66940 Dof-type zinc finger DNA-binding family protein -0.6 0.29 -0.32
111 ATCG00180 DNA-directed RNA polymerase family protein RPOC1 -0.59 0.32 -0.31
112 AT5G13950 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02290.1); Has 147 Blast hits
to 145 proteins in 44 species: Archae - 0; Bacteria - 2;
Metazoa - 56; Fungi - 6; Plants - 81; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.59 0.31 -0.33
113 ATCG01060 iron-sulfur cluster binding;electron carriers;4 iron, 4
sulfur cluster binding		 PSAC -0.59 0.33 -0.32
114 ATCG00800 structural constituent of ribosome -0.59 0.32 -0.3
115 AT1G28100 unknown protein; Has 64 Blast hits to 64 proteins in 27
species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6;
Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.59 0.31 -0.31
116 ATCG00150 ATPase, F0 complex, subunit A protein ATPI -0.59 0.33 -0.33
117 AT3G06220 AP2/B3-like transcriptional factor family protein -0.59 0.32 -0.32
118 AT1G80460 Actin-like ATPase superfamily protein GLI1, nonhost resistance to P. s.
phaseolicola 1		 0.59 0.29 -0.32
119 AT5G05540 small RNA degrading nuclease 2 small RNA degrading nuclease 2 0.59 0.32 -0.3
120 AT2G32640 Lycopene beta/epsilon cyclase protein -0.59 0.31 -0.33
121 AT5G23020 2-isopropylmalate synthase 2 2-isopropylmalate synthase 2,
METHYLTHIOALKYMALATE
SYNTHASE-LIKE, MAM3		 0.59 0.32 -0.31
122 AT3G20930 RNA-binding (RRM/RBD/RNP motifs) family protein -0.59 0.32 -0.31
123 AT3G01670 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G01680.1); Has 121 Blast hits
to 111 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 sieve element occlusion a -0.59 0.32 -0.3
124 AT5G44670 Domain of unknown function (DUF23) -0.59 0.31 -0.32
125 ATCG00500 acetyl-CoA carboxylase carboxyl transferase subunit beta acetyl-CoA carboxylase carboxyl
transferase subunit beta		 -0.59 0.33 -0.3
126 AT1G03210 Phenazine biosynthesis PhzC/PhzF protein 0.58 0.31 -0.31
127 AT3G55960 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.58 0.33 -0.31
128 AT1G28390 Protein kinase superfamily protein 0.58 0.29 -0.32
129 AT3G20710 F-box family protein 0.58 0.31 -0.29
130 AT1G30370 alpha/beta-Hydrolases superfamily protein DAD1-like acylhydrolase 0.58 0.32 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
131 C0204 Phosphatidylglycerol-34:2 - Phosphatidylglycerol-34:2 cardiolipin biosynthesis II,
linoleate biosynthesis I,
glycerophosphodiester degradation,
glutathione redox reactions I 		-0.78 0.45 -0.45 C0204
132 C0227 Ribose D-Ribose D-Ribose ribose degradation,
guanosine nucleotides degradation I,
pyrimidine salvage pathway,
pyridine nucleotide cycling (plants),
adenine and adenosine salvage II,
guanosine nucleotides degradation II,
guanine and guanosine salvage II,
cis-zeatin biosynthesis,
adenosine nucleotides degradation I,
pyrimidine ribonucleosides degradation II 		0.75 0.47 -0.44 C0227
133 C0239 Spermidine - Spermidine spermine biosynthesis,
spermine and spermidine degradation III,
beta-alanine biosynthesis I,
hypusine biosynthesis,
spermidine hydroxycinnamic acid conjugates biosynthesis,
spermidine biosynthesis I 		0.62 0.44 -0.44 C0239
134 C0214 PR_MST_2412.1 - - - -0.59 0.44 -0.44