AT3G02040 : AtGDPD1
Query Information
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AGICode AT3G02040
Description senescence-related gene 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G02040 senescence-related gene 3 AtGDPD1, Glycerophosphodiester
phosphodiesterase 1,
senescence-related gene 3		 1 0.32 -0.33
2 AT5G20150 SPX domain gene 1 ARABIDOPSIS THALIANA SPX DOMAIN
GENE 1, SPX domain gene 1		 0.94 0.32 -0.31
3 AT1G67600 Acid phosphatase/vanadium-dependent haloperoxidase-related
protein		 0.91 0.3 -0.32
4 AT1G17710 Pyridoxal phosphate phosphatase-related protein Arabidopsis thaliana
phosphoethanolamine/phosphocholine
phosphatase 1,
phosphoethanolamine/phosphocholine
phosphatase 1		 0.91 0.32 -0.33
5 AT2G45130 SPX domain gene 3 ARABIDOPSIS THALIANA SPX DOMAIN
GENE 3, SPX domain gene 3		 0.9 0.32 -0.31
6 AT1G73010 phosphate starvation-induced gene 2 pyrophosphate-specific
phosphatase1, phosphate
starvation-induced gene 2,
pyrophosphate-specific
phosphatase1, phosphate
starvation-induced gene 2		 0.88 0.32 -0.3
7 AT5G20790 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis,
petal differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G43110.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.87 0.33 -0.3
8 AT5G20410 monogalactosyldiacylglycerol synthase 2 ARABIDOPSIS THALIANA
MONOGALACTOSYLDIACYLGLYCEROL
SYNTHASE 2,
monogalactosyldiacylglycerol
synthase 2		 0.87 0.34 -0.32
9 AT2G11810 monogalactosyldiacylglycerol synthase type C ATMGD3, MONOGALACTOSYL
DIACYLGLYCEROL SYNTHASE 3,
monogalactosyldiacylglycerol
synthase type C		 0.87 0.32 -0.32
10 AT1G08310 alpha/beta-Hydrolases superfamily protein 0.86 0.3 -0.29
11 AT5G01220 sulfoquinovosyldiacylglycerol 2 sulfoquinovosyldiacylglycerol 2 0.86 0.29 -0.31
12 AT3G05630 phospholipase D P2 PHOSPHOLIPASE D ZETA 2,
phospholipase D P2, PHOSPHOLIPASE
D ZETA 2		 0.83 0.31 -0.33
13 AT4G33030 sulfoquinovosyldiacylglycerol 1 sulfoquinovosyldiacylglycerol 1 0.83 0.32 -0.31
14 AT3G17790 purple acid phosphatase 17 ATACP5, ATPAP17, purple acid
phosphatase 17		 0.8 0.3 -0.32
15 AT2G26660 SPX domain gene 2 ARABIDOPSIS THALIANA SPX DOMAIN
GENE 2, SPX domain gene 2		 0.79 0.32 -0.3
16 AT4G35750 SEC14 cytosolic factor family protein / phosphoglyceride
transfer family protein		 0.78 0.31 -0.33
17 AT1G71130 Integrase-type DNA-binding superfamily protein cytokinin response factor 8 0.76 0.32 -0.31
18 AT2G27190 purple acid phosphatase 12 ARABIDOPSIS THALIANA PURPLE ACID
PHOSPHATASE 1, PURPLE ACID
PHOSPHATASE 12, PURPLE ACID
PHOSPHATASE 1, purple acid
phosphatase 12		 0.76 0.32 -0.31
19 AT1G74210 PLC-like phosphodiesterases superfamily protein AtGDPD5, glycerophosphodiester
phosphodiesterase 5		 0.74 0.32 -0.32
20 AT3G47420 phosphate starvation-induced gene 3 Glycerol-3-phosphate permease 1,
phosphate starvation-induced gene
3, Glycerol-3-phosphate permease
1, phosphate starvation-induced
gene 3		 0.73 0.33 -0.31
21 AT1G23140 Calcium-dependent lipid-binding (CaLB domain) family
protein		 0.71 0.33 -0.34
22 AT4G33770 Inositol 1,3,4-trisphosphate 5/6-kinase family protein 0.7 0.3 -0.33
23 AT4G03960 Phosphotyrosine protein phosphatases superfamily protein AtPFA-DSP4, plant and fungi
atypical dual-specificity
phosphatase 4		 0.69 0.31 -0.31
24 AT3G02870 Inositol monophosphatase family protein VTC4 0.69 0.31 -0.32
25 AT4G23000 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.69 0.32 -0.33
26 AT5G41080 PLC-like phosphodiesterases superfamily protein AtGDPD2, glycerophosphodiester
phosphodiesterase 2		 0.68 0.33 -0.35
27 AT2G37890 Mitochondrial substrate carrier family protein 0.67 0.31 -0.32
28 AT5G10740 Protein phosphatase 2C family protein 0.67 0.3 -0.31
29 AT2G42490 Copper amine oxidase family protein 0.67 0.32 -0.33
30 AT3G26200 cytochrome P450, family 71, subfamily B, polypeptide 22 cytochrome P450, family 71,
subfamily B, polypeptide 22		 0.66 0.29 -0.33
31 AT3G04530 phosphoenolpyruvate carboxylase kinase 2 ATPPCK2, PHOSPHOENOLPYRUVATE
CARBOXYLASE KINASE 2,
phosphoenolpyruvate carboxylase
kinase 2		 0.66 0.31 -0.32
32 AT3G43110 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: petal, flower; EXPRESSED
DURING: 4 anthesis, petal differentiation and expansion
stage; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT5G20790.1); Has 30 Blast hits to 30
proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.66 0.33 -0.3
33 AT1G33780 Protein of unknown function (DUF179) 0.66 0.3 -0.34
34 AT1G08650 phosphoenolpyruvate carboxylase kinase 1 PHOSPHOENOLPYRUVATE CARBOXYLASE
KINASE 1, phosphoenolpyruvate
carboxylase kinase 1		 0.64 0.34 -0.32
35 AT2G27360 GDSL-like Lipase/Acylhydrolase superfamily protein 0.64 0.32 -0.3
36 AT2G01680 Ankyrin repeat family protein 0.64 0.31 -0.32
37 AT3G59300 Pentatricopeptide repeat (PPR) superfamily protein 0.64 0.33 -0.31
38 AT3G02980 MEIOTIC CONTROL OF CROSSOVERS1 MEIOTIC CONTROL OF CROSSOVERS1 0.64 0.3 -0.35
39 AT4G32690 hemoglobin 3 ARABIDOPSIS HEMOGLOBIN 3,
hemoglobin 3		 0.64 0.32 -0.34
40 AT3G44510 alpha/beta-Hydrolases superfamily protein 0.63 0.32 -0.28
41 AT4G39240 Galactose oxidase/kelch repeat superfamily protein 0.63 0.33 -0.29
42 AT5G53530 vacuolar protein sorting 26A vacuolar protein sorting 26A 0.62 0.33 -0.34
43 AT4G18260 Cytochrome b561/ferric reductase transmembrane protein
family		 -0.62 0.32 -0.3
44 AT4G04040 Phosphofructokinase family protein maternal effect embryo arrest 51 0.62 0.33 -0.33
45 AT2G23120 Late embryogenesis abundant protein, group 6 -0.62 0.29 -0.33
46 AT1G24575 unknown protein; Has 7 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.61 0.32 -0.33
47 AT1G20450 Dehydrin family protein EARLY RESPONSIVE TO DEHYDRATION
10, LOW TEMPERATURE INDUCED 29,
LOW TEMPERATURE INDUCED 45		 -0.61 0.33 -0.32
48 AT4G02050 sugar transporter protein 7 sugar transporter protein 7 0.61 0.3 -0.31
49 AT2G17840 Senescence/dehydration-associated protein-related EARLY-RESPONSIVE TO DEHYDRATION 7 -0.61 0.32 -0.32
50 AT1G76180 Dehydrin family protein EARLY RESPONSE TO DEHYDRATION 14 -0.6 0.32 -0.3
51 AT2G46880 purple acid phosphatase 14 ATPAP14, purple acid phosphatase
14		 0.6 0.31 -0.3
52 AT3G03790 ankyrin repeat family protein / regulator of chromosome
condensation (RCC1) family protein		 0.6 0.3 -0.33
53 AT5G19430 RING/U-box superfamily protein 0.6 0.32 -0.32
54 AT1G76900 tubby like protein 1 tubby like protein 1, tubby like
protein 1		 -0.6 0.31 -0.31
55 AT4G40010 SNF1-related protein kinase 2.7 SUCROSE NONFERMENTING 1-RELATED
PROTEIN KINASE 2-7, SNF1-related
protein kinase 2.7, SRK2F		 -0.6 0.33 -0.28
56 AT3G15310 transposable element gene 0.6 0.32 -0.34
57 AT1G53310 phosphoenolpyruvate carboxylase 1 ATPEPC1, phosphoenolpyruvate
carboxylase 1,
PEP(PHOSPHOENOLPYRUVATE)
CARBOXYLASE 1, phosphoenolpyruvate
carboxylase 1		 0.6 0.32 -0.31
58 AT5G53880 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plasma membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.6 0.3 -0.33
59 AT5G53030 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF688 (InterPro:IPR007789); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G27810.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.59 0.33 -0.29
60 AT2G04460 transposable element gene 0.59 0.32 -0.34
61 AT5G40980 Protein of unknown function (DUF 3339) 0.59 0.3 -0.3
62 AT3G44510 alpha/beta-Hydrolases superfamily protein 0.58 0.31 -0.3
63 AT5G16770 myb domain protein 9 myb domain protein 9, myb domain
protein 9		 -0.58 0.31 -0.3
64 AT5G42680 Protein of unknown function, DUF617 0.58 0.32 -0.31
65 AT1G13750 Purple acid phosphatases superfamily protein 0.58 0.32 -0.33
66 AT1G21790 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing
protein		 -0.57 0.32 -0.35
67 AT1G55120 beta-fructofuranosidase 5 6-fructan exohydrolase,
beta-fructofuranosidase 5,
beta-fructofuranosidase 5		 0.57 0.33 -0.32
68 AT1G72890 Disease resistance protein (TIR-NBS class) 0.57 0.31 -0.3
69 AT3G50410 OBF binding protein 1 OBF binding protein 1 -0.57 0.33 -0.31
70 AT3G09760 RING/U-box superfamily protein -0.57 0.33 -0.32
71 AT1G19200 Protein of unknown function (DUF581) 0.56 0.33 -0.32
72 AT4G31140 O-Glycosyl hydrolases family 17 protein -0.56 0.3 -0.32
73 AT2G17620 Cyclin B2;1 Cyclin B2;1 -0.56 0.3 -0.31
74 AT5G18340 ARM repeat superfamily protein 0.55 0.3 -0.32
75 AT1G08070 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 3102, ORGANELLE
TRANSCRIPT PROCESSING 82		 -0.55 0.33 -0.32
76 AT3G54610 histone acetyltransferase of the GNAT family 1 BIG TOP, general control
non-repressible 5, HAC3, HAG01,
histone acetyltransferase of the
GNAT family 1, HISTONE
ACETYLTRANSFERASE 1		 0.55 0.31 -0.32
77 AT4G15210 beta-amylase 5 AT-BETA-AMY, ARABIDOPSIS THALIANA
BETA-AMYLASE, beta-amylase 5,
BMY1, REDUCED BETA AMYLASE 1		 0.54 0.3 -0.32
78 AT3G19400 Cysteine proteinases superfamily protein 0.54 0.3 -0.3
79 AT2G18500 ovate family protein 7 ARABIDOPSIS THALIANA OVATE FAMILY
PROTEIN 7, ovate family protein 7		 -0.53 0.31 -0.32
80 AT2G24140 Protein of unknown function, DUF593 -0.53 0.32 -0.32
81 AT2G33830 Dormancy/auxin associated family protein -0.52 0.31 -0.31
82 AT3G19120 PIF / Ping-Pong family of plant transposases -0.52 0.32 -0.3
83 AT2G02100 low-molecular-weight cysteine-rich 69 low-molecular-weight cysteine-rich
69, PDF2.2		 -0.52 0.33 -0.31
84 AT1G47270 tubby like protein 6 tubby like protein 6, tubby like
protein 6		 -0.52 0.29 -0.34
85 AT1G53860 Remorin family protein -0.51 0.33 -0.32
86 AT2G21130 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 -0.51 0.32 -0.3
87 AT4G13560 Late embryogenesis abundant protein (LEA) family protein unfertilized embryo sac 15 -0.51 0.32 -0.32
88 AT2G14680 myosin heavy chain-related maternal effect embryo arrest 13 0.51 0.32 -0.3
89 AT2G13840 Polymerase/histidinol phosphatase-like -0.5 0.31 -0.33
90 AT1G17540 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 -0.5 0.32 -0.32
91 AT2G44950 histone mono-ubiquitination 1 histone mono-ubiquitination 1,
REDUCED DORMANCY 4		 -0.5 0.32 -0.31
92 AT1G77390 CYCLIN A1;2 CYCLIN A1, CYCLIN A1;2, DYP, TARDY
ASYNCHRONOUS MEIOSIS		 -0.49 0.33 -0.3
93 AT4G35940 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G17787.1); Has 45288 Blast
hits to 24095 proteins in 1140 species: Archae - 93;
Bacteria - 2895; Metazoa - 13424; Fungi - 2873; Plants -
1183; Viruses - 123; Other Eukaryotes - 24697 (source: NCBI
BLink).		 -0.48 0.32 -0.3
94 AT5G18750 DNAJ heat shock N-terminal domain-containing protein -0.48 0.31 -0.3
95 AT1G58340 MATE efflux family protein BUSH-AND-CHLOROTIC-DWARF 1, ZF14,
ZRIZI		 -0.48 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
96 C0171 MST_2182.9 - - - -0.78 0.46 -0.44
97 C0175 MST_2379.9 - - - 0.77 0.44 -0.46
98 C0117 Hydroxyproline (2S,4R)-Hydroxyproline 4-Hydroxy-L-proline protein precursor 0.76 0.45 -0.45 C0117
99 C0209 Phosphoric acid - - ascorbate biosynthesis,
GDP biosynthesis,
polysaccharide biosynthesis 		-0.61 0.29 -0.3
100 C0242 Suberic acid - - - -0.59 0.45 -0.49