AT3G10090 : -
Query Information
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AGICode AT3G10090
Description Nucleic acid-binding, OB-fold-like protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G10090 Nucleic acid-binding, OB-fold-like protein 1 0.31 -0.31
2 AT3G19130 RNA-binding protein 47B RNA-binding protein 47B,
RNA-binding protein 47B		 0.87 0.34 -0.3
3 AT5G11340 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.85 0.35 -0.32
4 AT2G25210 Ribosomal protein L39 family protein 0.85 0.3 -0.31
5 AT3G19620 Glycosyl hydrolase family protein -0.85 0.31 -0.32
6 AT5G22440 Ribosomal protein L1p/L10e family 0.85 0.31 -0.32
7 AT4G12600 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.85 0.3 -0.35
8 AT5G41010 DNA directed RNA polymerase, 7 kDa subunit NRPB12, NRPD12, NRPE12 0.84 0.32 -0.32
9 AT2G20940 Protein of unknown function (DUF1279) 0.84 0.31 -0.32
10 AT2G44790 uclacyanin 2 uclacyanin 2 0.84 0.31 -0.32
11 AT1G26740 Ribosomal L32p protein family 0.84 0.32 -0.33
12 AT4G39300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.83 0.32 -0.31
13 AT4G33865 Ribosomal protein S14p/S29e family protein 0.83 0.33 -0.32
14 AT5G41520 RNA binding Plectin/S10 domain-containing protein 0.83 0.3 -0.31
15 AT2G23930 probable small nuclear ribonucleoprotein G probable small nuclear
ribonucleoprotein G		 0.82 0.31 -0.34
16 AT3G25120 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 0.81 0.29 -0.31
17 AT1G14980 chaperonin 10 chaperonin 10 0.81 0.33 -0.31
18 AT3G13040 myb-like HTH transcriptional regulator family protein -0.81 0.32 -0.31
19 AT5G62000 auxin response factor 2 ARF1-BINDING PROTEIN, auxin
response factor 2, HLS1
SUPPRESSOR, ORESARA 14		 -0.81 0.32 -0.33
20 AT3G57550 guanylate kinase guanylate kinase, GUANYLATE KINAS
2		 0.81 0.32 -0.31
21 AT1G31817 Ribosomal L18p/L5e family protein NUCLEAR FUSION DEFECTIVE 3 0.81 0.33 -0.33
22 AT4G31985 Ribosomal protein L39 family protein 0.8 0.32 -0.29
23 AT3G02190 Ribosomal protein L39 family protein 0.8 0.33 -0.3
24 AT1G74270 Ribosomal protein L35Ae family protein 0.8 0.31 -0.32
25 AT2G44270 repressor of lrx1 repressor of lrx1 0.8 0.31 -0.32
26 AT2G30050 transducin family protein / WD-40 repeat family protein 0.8 0.32 -0.31
27 AT3G23430 phosphate 1 ARABIDOPSIS PHOSPHATE 1, phosphate
1		 0.8 0.31 -0.3
28 AT4G15850 RNA helicase 1 RNA helicase 1, RNA helicase 1 0.79 0.32 -0.32
29 AT5G25220 KNOTTED1-like homeobox gene 3 KNOTTED1-like homeobox gene 3 -0.79 0.32 -0.33
30 AT5G23900 Ribosomal protein L13e family protein 0.79 0.31 -0.32
31 AT4G23620 Ribosomal protein L25/Gln-tRNA synthetase,
anti-codon-binding domain		 0.79 0.3 -0.32
32 AT2G32070 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.79 0.31 -0.32
33 AT3G55605 Mitochondrial glycoprotein family protein 0.79 0.33 -0.3
34 AT3G11410 protein phosphatase 2CA AHG3, ARABIDOPSIS THALIANA PROTEIN
PHOSPHATASE 2CA, protein
phosphatase 2CA		 -0.79 0.31 -0.33
35 AT2G29530 Tim10/DDP family zinc finger protein TIM10 0.78 0.3 -0.3
36 AT1G15930 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.78 0.3 -0.31
37 AT1G76160 SKU5 similar 5 SKU5 similar 5 0.78 0.33 -0.3
38 AT3G13860 heat shock protein 60-3A heat shock protein 60-3A 0.78 0.31 -0.32
39 AT3G28200 Peroxidase superfamily protein 0.78 0.31 -0.3
40 AT1G73940 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49410.2); Has 54 Blast hits
to 54 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.78 0.32 -0.32
41 AT2G19480 nucleosome assembly protein 1;2 nucleosome assembly protein 1;2,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 2		 0.78 0.31 -0.31
42 AT5G43970 translocase of outer membrane 22-V ATTOM22-V, translocase of outer
membrane 22-V, TRANSLOCASE OUTER
MITOCHONDRIAL MEMBRANE 22-V		 0.78 0.33 -0.31
43 AT3G01790 Ribosomal protein L13 family protein 0.78 0.29 -0.31
44 AT4G31180 Class II aminoacyl-tRNA and biotin synthetases superfamily
protein		 0.77 0.3 -0.32
45 AT3G04710 ankyrin repeat family protein tetratricopeptide repeat 10 0.77 0.31 -0.29
46 AT1G14830 DYNAMIN-like 1C DYNAMIN-like 1C, ARABIDOPSIS
DYNAMIN-LIKE PROTEIN 5,
DYNAMIN-like 1C, DYNAMIN RELATED
PROTEIN 1C		 0.77 0.31 -0.34
47 AT3G61890 homeobox 12 homeobox 12, ARABIDOPSIS THALIANA
HOMEOBOX 12, homeobox 12		 -0.77 0.34 -0.32
48 AT5G16470 zinc finger (C2H2 type) family protein 0.77 0.33 -0.31
49 AT4G08460 Protein of unknown function (DUF1644) 0.77 0.31 -0.3
50 AT2G39795 Mitochondrial glycoprotein family protein 0.77 0.33 -0.33
51 AT5G26710 Glutamyl/glutaminyl-tRNA synthetase, class Ic 0.77 0.3 -0.32
52 AT5G40770 prohibitin 3 prohibitin 3, prohibitin 3 0.77 0.33 -0.3
53 AT1G51140 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.77 0.33 -0.32
54 AT1G64370 unknown protein; Has 773 Blast hits to 375 proteins in 118
species: Archae - 0; Bacteria - 97; Metazoa - 421; Fungi -
108; Plants - 31; Viruses - 0; Other Eukaryotes - 116
(source: NCBI BLink).		 -0.77 0.31 -0.32
55 AT3G51830 SAC domain-containing protein 8 ATG5, SAC domain-containing
protein 8		 -0.76 0.31 -0.32
56 AT3G04230 Ribosomal protein S5 domain 2-like superfamily protein 0.76 0.32 -0.32
57 AT5G11760 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1764, eukaryotic (InterPro:IPR013885);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.76 0.31 -0.31
58 AT1G61770 Chaperone DnaJ-domain superfamily protein 0.76 0.31 -0.31
59 AT2G18400 ribosomal protein L6 family protein 0.76 0.34 -0.29
60 AT5G62000 auxin response factor 2 ARF1-BINDING PROTEIN, auxin
response factor 2, HLS1
SUPPRESSOR, ORESARA 14		 -0.76 0.32 -0.32
61 AT1G26750 unknown protein; Has 44 Blast hits to 44 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.76 0.29 -0.3
62 AT1G14210 Ribonuclease T2 family protein 0.76 0.33 -0.31
63 AT1G34020 Nucleotide-sugar transporter family protein 0.75 0.33 -0.3
64 AT1G14060 GCK domain-containing protein 0.75 0.31 -0.33
65 AT1G11680 CYTOCHROME P450 51G1 CYTOCHROME P450 51, CYTOCHROME
P450 51A2, CYTOCHROME P450 51G1,
embryo defective 1738		 0.75 0.31 -0.3
66 AT3G02350 galacturonosyltransferase 9 galacturonosyltransferase 9 0.75 0.32 -0.35
67 AT4G29390 Ribosomal protein S30 family protein 0.75 0.34 -0.31
68 AT5G02050 Mitochondrial glycoprotein family protein 0.75 0.33 -0.3
69 AT5G19300 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding,
OB-fold-like (InterPro:IPR016027), Protein of unknown
function DUF171 (InterPro:IPR003750); Has 3649 Blast hits
to 1964 proteins in 291 species: Archae - 113; Bacteria -
121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses -
4; Other Eukaryotes - 1703 (source: NCBI BLink).		 0.75 0.31 -0.32
70 AT2G40330 PYR1-like 6 PYR1-like 6, regulatory components
of ABA receptor 9		 0.75 0.32 -0.33
71 AT5G65650 Protein of unknown function (DUF1195) 0.75 0.31 -0.32
72 AT5G56520 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G55365.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.75 0.33 -0.31
73 AT2G20585 nuclear fusion defective 6 NUCLEAR FUSION DEFECTIVE 6 0.75 0.3 -0.31
74 AT4G03200 catalytics -0.75 0.31 -0.31
75 AT3G17465 ribosomal protein L3 plastid ribosomal protein L3 plastid 0.75 0.31 -0.3
76 AT1G01240 unknown protein; INVOLVED IN: N-terminal protein
myristoylation; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 11 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G46550.1); Has 95 Blast hits to 78 proteins in 16
species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 0;
Plants - 80; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.75 0.3 -0.31
77 AT2G38790 unknown protein; Has 21 Blast hits to 21 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.74 0.32 -0.32
78 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.74 0.32 -0.31
79 AT5G57610 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 -0.74 0.3 -0.31
80 AT4G04750 Major facilitator superfamily protein -0.73 0.32 -0.31
81 AT1G03380 homolog of yeast autophagy 18 (ATG18) G homolog of yeast autophagy 18
(ATG18) G, homolog of yeast
autophagy 18 (ATG18) G		 -0.73 0.31 -0.35
82 AT1G02120 GRAM domain family protein VASCULAR ASSOCIATED DEATH1 -0.73 0.31 -0.34
83 AT4G02630 Protein kinase superfamily protein -0.73 0.33 -0.31
84 AT5G57040 Lactoylglutathione lyase / glyoxalase I family protein -0.73 0.32 -0.31
85 AT4G24450 phosphoglucan, water dikinase ATGWD2, GWD3, phosphoglucan, water
dikinase		 -0.72 0.31 -0.31
86 AT1G62540 flavin-monooxygenase glucosinolate S-oxygenase 2 flavin-monooxygenase glucosinolate
S-oxygenase 2		 -0.72 0.32 -0.33
87 AT1G07430 highly ABA-induced PP2C gene 2 highly ABA-induced PP2C gene 2 -0.72 0.3 -0.31
88 AT1G08040 Protein of unknown function (DUF707) -0.72 0.33 -0.32
89 AT1G18870 isochorismate synthase 2 ARABIDOPSIS ISOCHORISMATE SYNTHASE
2, isochorismate synthase 2		 -0.71 0.29 -0.32
90 AT3G56050 Protein kinase family protein -0.71 0.29 -0.32
91 AT5G66320 GATA transcription factor 5 GATA transcription factor 5 -0.71 0.29 -0.3
92 AT5G03650 starch branching enzyme 2.2 starch branching enzyme 2.2 -0.71 0.32 -0.3
93 AT3G57540 Remorin family protein -0.71 0.32 -0.29
94 AT5G01880 RING/U-box superfamily protein -0.71 0.32 -0.3
95 AT1G54160 nuclear factor Y, subunit A5 nuclear factor Y, subunit A5,
NUCLEAR FACTOR Y A5		 -0.71 0.31 -0.32
96 AT3G05640 Protein phosphatase 2C family protein -0.71 0.32 -0.31
97 AT1G70420 Protein of unknown function (DUF1645) -0.7 0.31 -0.34
98 AT5G37360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 -0.7 0.29 -0.33
99 AT5G17520 root cap 1 (RCP1) MALTOSE EXCESS 1, ROOT CAP 1 -0.7 0.3 -0.32
100 AT1G15060 Uncharacterised conserved protein UCP031088, alpha/beta
hydrolase		 -0.69 0.32 -0.31
101 AT3G45900 Ribonuclease P protein subunit P38-related -0.69 0.33 -0.31
102 AT5G51890 Peroxidase superfamily protein -0.69 0.33 -0.31
103 AT5G01300 PEBP (phosphatidylethanolamine-binding protein) family
protein		 -0.69 0.3 -0.32
104 AT1G02205 Fatty acid hydroxylase superfamily ECERIFERUM 1 -0.69 0.3 -0.33
105 AT5G15190 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: LP.04 four leaves visible, 4 anthesis, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; Has 7 Blast hits to 7 proteins in
3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.69 0.3 -0.29
106 AT5G16490 ROP-interactive CRIB motif-containing protein 4 ROP-interactive CRIB
motif-containing protein 4		 -0.69 0.33 -0.31
107 AT2G41190 Transmembrane amino acid transporter family protein -0.69 0.31 -0.33
108 AT1G22710 sucrose-proton symporter 2 ARABIDOPSIS THALIANA
SUCROSE-PROTON SYMPORTER 2,
sucrose-proton symporter 2,
SUCROSE TRANSPORTER 1		 -0.69 0.33 -0.3
109 AT2G45990 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 312
Blast hits to 312 proteins in 90 species: Archae - 0;
Bacteria - 131; Metazoa - 0; Fungi - 0; Plants - 67;
Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).		 -0.69 0.3 -0.33
110 AT4G34480 O-Glycosyl hydrolases family 17 protein -0.68 0.32 -0.31
111 AT2G28420 Lactoylglutathione lyase / glyoxalase I family protein glyoxylase I 8 -0.68 0.32 -0.3
112 AT5G52880 F-box family protein -0.68 0.3 -0.29
113 AT4G15475 F-box/RNI-like superfamily protein -0.68 0.31 -0.3
114 AT4G02420 Concanavalin A-like lectin protein kinase family protein -0.67 0.31 -0.32
115 AT5G24380 YELLOW STRIPE like 2 YELLOW STRIPE LIKE 2, YELLOW
STRIPE like 2		 -0.67 0.29 -0.32
116 AT1G29395 COLD REGULATED 314 INNER MEMBRANE 1 COLD REGULATED 314 THYLAKOID
MEMBRANE 1, COLD REGULATED 314
INNER MEMBRANE 1, cold regulated
414 thylakoid membrane 1		 -0.67 0.32 -0.3
117 AT1G68570 Major facilitator superfamily protein -0.67 0.31 -0.31
118 AT4G16750 Integrase-type DNA-binding superfamily protein -0.67 0.33 -0.3
119 AT4G01280 Homeodomain-like superfamily protein -0.66 0.29 -0.33
120 AT5G67180 target of early activation tagged (EAT) 3 target of early activation tagged
(EAT) 3		 -0.66 0.3 -0.3
121 AT2G36390 starch branching enzyme 2.1 BRANCHING ENZYME 3, starch
branching enzyme 2.1		 -0.66 0.33 -0.31
122 AT2G22240 myo-inositol-1-phosphate synthase 2 INOSITOL 3-PHOSPHATE SYNTHASE 2,
MYO-INOSITOL-1-PHOSTPATE SYNTHASE
2, myo-inositol-1-phosphate
synthase 2		 -0.66 0.32 -0.31
123 AT1G48840 Plant protein of unknown function (DUF639) -0.66 0.33 -0.29
124 AT1G71050 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 20		 -0.66 0.29 -0.31
125 AT5G24080 Protein kinase superfamily protein -0.66 0.32 -0.33
126 AT3G23340 casein kinase I-like 10 casein kinase I-like 10 -0.66 0.33 -0.32
127 AT5G52300 CAP160 protein LOW-TEMPERATURE-INDUCED 65,
RESPONSIVE TO DESSICATION 29B		 -0.66 0.33 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
128 C0109 Guanine - Guanine guanine and guanosine salvage II,
guanosine nucleotides degradation II 		-0.83 0.43 -0.47 C0109
129 C0111 Hexa-2-O-glycerol-β-galactopyranoside Hexa-2-O-gllycerol-β-D-galactopyranoside - - -0.82 0.45 -0.47
130 C0225 Raffinose D-(+)-Raffinose Raffinose ajugose biosynthesis II (galactinol-independent),
stachyose biosynthesis,
stachyose degradation 		-0.76 0.48 -0.43 C0225
131 C0189 Nicotinic acid - Nicotinate pyridine nucleotide cycling (plants),
aldoxime degradation 		-0.72 0.32 -0.32 C0189