AT3G07360 : ARABIDOPSIS THALIANA PLANT U-BOX 9
Query Information
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AGICode AT3G07360
Description plant U-box 9
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G07360 plant U-box 9 ARABIDOPSIS THALIANA PLANT U-BOX
9, plant U-box 9		 1 0.31 -0.34
2 AT2G38790 unknown protein; Has 21 Blast hits to 21 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.83 0.31 -0.32
3 AT1G24280 glucose-6-phosphate dehydrogenase 3 glucose-6-phosphate dehydrogenase
3		 -0.82 0.3 -0.31
4 AT5G52660 Homeodomain-like superfamily protein 0.82 0.32 -0.31
5 AT1G73480 alpha/beta-Hydrolases superfamily protein 0.8 0.33 -0.32
6 AT2G40460 Major facilitator superfamily protein 0.8 0.31 -0.32
7 AT3G15780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G52550.1); Has 20 Blast hits
to 20 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.79 0.32 -0.31
8 AT3G28007 Nodulin MtN3 family protein AtSWEET4, SWEET4 0.79 0.3 -0.31
9 AT5G49660 Leucine-rich repeat transmembrane protein kinase family
protein		 XYLEM INTERMIXED WITH PHLOEM 1 0.79 0.33 -0.32
10 AT5G13200 GRAM domain family protein 0.78 0.3 -0.29
11 AT1G06790 RNA polymerase Rpb7 N-terminal domain-containing protein -0.78 0.31 -0.31
12 AT1G27200 Domain of unknown function (DUF23) 0.78 0.32 -0.3
13 AT3G21270 DOF zinc finger protein 2 DOF zinc finger protein 2, DOF
zinc finger protein 2		 0.78 0.34 -0.31
14 AT4G30190 H(+)-ATPase 2 H(+)-ATPase 2, H(+)-ATPase 2,
PLASMA MEMBRANE PROTON ATPASE 2		 -0.78 0.3 -0.3
15 AT1G65840 polyamine oxidase 4 polyamine oxidase 4, polyamine
oxidase 4		 -0.77 0.33 -0.32
16 AT4G00710 BR-signaling kinase 3 BR-signaling kinase 3 -0.76 0.32 -0.3
17 AT1G04590 BEST Arabidopsis thaliana protein match is:
Pentatricopeptide repeat (PPR) superfamily protein
(TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.76 0.31 -0.32
18 AT1G58360 amino acid permease 1 amino acid permease 1, NEUTRAL
AMINO ACID TRANSPORTER 2		 0.76 0.31 -0.31
19 AT5G62000 auxin response factor 2 ARF1-BINDING PROTEIN, auxin
response factor 2, HLS1
SUPPRESSOR, ORESARA 14		 0.76 0.3 -0.31
20 AT3G28220 TRAF-like family protein 0.76 0.3 -0.31
21 AT5G45630 Protein of unknown function, DUF584 0.75 0.29 -0.31
22 AT4G05400 copper ion binding -0.75 0.32 -0.31
23 AT3G04770 40s ribosomal protein SA B 40s ribosomal protein SA B -0.75 0.33 -0.34
24 AT2G31740 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.75 0.32 -0.31
25 AT3G14440 nine-cis-epoxycarotenoid dioxygenase 3 ATNCED3, nine-cis-epoxycarotenoid
dioxygenase 3, SUGAR INSENSITIVE
7, SALT TOLERANT 1		 0.75 0.29 -0.32
26 AT1G29395 COLD REGULATED 314 INNER MEMBRANE 1 COLD REGULATED 314 THYLAKOID
MEMBRANE 1, COLD REGULATED 314
INNER MEMBRANE 1, cold regulated
414 thylakoid membrane 1		 0.75 0.33 -0.31
27 AT1G64970 gamma-tocopherol methyltransferase gamma-tocopherol
methyltransferase, TMT1, VITAMIN E
DEFICIENT 4		 0.75 0.32 -0.3
28 AT1G12020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G62422.1); Has 89 Blast hits
to 88 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.75 0.33 -0.31
29 AT1G76590 PLATZ transcription factor family protein 0.74 0.32 -0.32
30 AT2G37890 Mitochondrial substrate carrier family protein -0.74 0.33 -0.32
31 AT3G03870 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G18130.1); Has 41 Blast hits
to 41 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.74 0.29 -0.33
32 AT1G69210 Uncharacterised protein family UPF0090 -0.74 0.32 -0.3
33 AT2G17990 BEST Arabidopsis thaliana protein match is:
kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast hits to
6129 proteins in 783 species: Archae - 220; Bacteria -
1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses -
38; Other Eukaryotes - 1653 (source: NCBI BLink).		 0.74 0.3 -0.3
34 AT1G61660 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.74 0.32 -0.33
35 AT2G40810 homolog of yeast autophagy 18C homolog of yeast autophagy 18C,
homolog of yeast autophagy 18C		 0.74 0.33 -0.33
36 AT4G11460 cysteine-rich RLK (RECEPTOR-like protein kinase) 30 cysteine-rich RLK (RECEPTOR-like
protein kinase) 30		 -0.73 0.31 -0.3
37 AT5G01820 serine/threonine protein kinase 1 ATCIPK14, serine/threonine protein
kinase 1, CBL-INTERACTING PROTEIN
KINASE 14, SOS2-like protein
kinase 24, SNF1-RELATED PROTEIN
KINASE 3.15, serine/threonine
protein kinase 1		 0.73 0.32 -0.33
38 AT2G32800 protein kinase family protein AP4.3A 0.73 0.32 -0.32
39 AT1G15930 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein -0.72 0.34 -0.3
40 AT1G60190 ARM repeat superfamily protein AtPUB19, plant U-box 19 0.72 0.31 -0.32
41 AT5G62020 heat shock transcription factor B2A ARABIDOPSIS THALIANA HEAT SHOCK
TRANSCRIPTION FACTOR B2A, heat
shock transcription factor B2A		 0.72 0.33 -0.33
42 AT5G17510 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G03460.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.72 0.32 -0.32
43 AT3G23660 Sec23/Sec24 protein transport family protein -0.72 0.34 -0.32
44 AT4G22270 Protein of unknown function (DUF3537) ARABIDOPSIS MEMBRANE RELATED
BIGGER1, MEMBRANE RELATED BIGGER1		 0.72 0.31 -0.34
45 AT3G02130 receptor-like protein kinase 2 clv3 peptide insensitive 1,
receptor-like protein kinase 2,
TOADSTOOL 2		 0.72 0.33 -0.32
46 AT2G40435 BEST Arabidopsis thaliana protein match is: transcription
regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289
proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.72 0.29 -0.32
47 AT1G74430 myb domain protein 95 ARABIDOPSIS THALIANA MYB DOMAIN
PROTEIN 95, ARABIDOPSIS THALIANA
MYB DOMAIN CONTAINING PROTEIN 66,
myb domain protein 95		 0.72 0.32 -0.3
48 AT3G56880 VQ motif-containing protein 0.72 0.34 -0.34
49 AT2G40660 Nucleic acid-binding, OB-fold-like protein -0.72 0.29 -0.31
50 AT2G23350 poly(A) binding protein 4 poly(A) binding protein 4, POLY(A)
BINDING PROTEIN 4		 -0.72 0.32 -0.33
51 AT4G21410 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 cysteine-rich RLK (RECEPTOR-like
protein kinase) 29		 -0.72 0.31 -0.31
52 AT3G29670 HXXXD-type acyl-transferase family protein phenolic glucoside
malonyltransferase 2		 0.72 0.27 -0.31
53 AT5G12980 Cell differentiation, Rcd1-like protein -0.72 0.31 -0.31
54 AT2G23760 BEL1-like homeodomain 4 BEL1-like homeodomain 4, SAWTOOTH
2		 0.72 0.31 -0.32
55 AT1G78070 Transducin/WD40 repeat-like superfamily protein 0.72 0.31 -0.33
56 AT3G23940 dehydratase family -0.71 0.34 -0.33
57 AT3G07270 GTP cyclohydrolase I -0.71 0.33 -0.32
58 AT1G18870 isochorismate synthase 2 ARABIDOPSIS ISOCHORISMATE SYNTHASE
2, isochorismate synthase 2		 0.71 0.32 -0.31
59 AT1G15810 S15/NS1, RNA-binding protein -0.71 0.32 -0.33
60 AT4G12390 pectin methylesterase inhibitor 1 pectin methylesterase inhibitor 1 -0.71 0.32 -0.31
61 AT4G22360 SWIB complex BAF60b domain-containing protein 0.71 0.32 -0.32
62 AT5G48370 Thioesterase/thiol ester dehydrase-isomerase superfamily
protein		 0.71 0.32 -0.34
63 AT2G22240 myo-inositol-1-phosphate synthase 2 INOSITOL 3-PHOSPHATE SYNTHASE 2,
MYO-INOSITOL-1-PHOSTPATE SYNTHASE
2, myo-inositol-1-phosphate
synthase 2		 0.71 0.33 -0.3
64 AT2G32090 Lactoylglutathione lyase / glyoxalase I family protein 0.71 0.32 -0.31
65 AT3G25540 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing
protein		 LONGEVITY ASSURANCE GENE 1 -0.71 0.33 -0.34
66 AT3G20300 Protein of unknown function (DUF3537) 0.71 0.33 -0.32
67 AT2G17840 Senescence/dehydration-associated protein-related EARLY-RESPONSIVE TO DEHYDRATION 7 0.71 0.31 -0.32
68 AT2G36210 SAUR-like auxin-responsive protein family -0.7 0.31 -0.3
69 AT1G49370 pseudogene, similar to OSJNBa0072F16.8, blastp match of 42%
identity and 6.6e-73 P-value to
GP|21739229|emb|CAD40984.1||AL606460 OSJNBa0072F16.8 {Oryza
sativa (japonica cultivar-group)}		 -0.7 0.31 -0.32
70 AT4G18800 RAB GTPase homolog A1D ATHSGBP, ATRAB11B, RAB GTPase
homolog A1D, RAB GTPase homolog
A1D		 -0.7 0.32 -0.34
71 AT1G62310 transcription factor jumonji (jmjC) domain-containing
protein		 0.7 0.31 -0.33
72 AT5G40170 receptor like protein 54 receptor like protein 54, receptor
like protein 54		 0.7 0.29 -0.31
73 AT5G15830 basic leucine-zipper 3 basic leucine-zipper 3, basic
leucine-zipper 3		 -0.7 0.31 -0.32
74 AT3G20730 Tetratricopeptide repeat (TPR)-like superfamily protein -0.7 0.33 -0.28
75 AT1G51090 Heavy metal transport/detoxification superfamily protein 0.7 0.31 -0.32
76 AT2G21220 SAUR-like auxin-responsive protein family -0.7 0.33 -0.33
77 AT2G23130 arabinogalactan protein 17 arabinogalactan protein 17,
ATAGP17		 -0.7 0.32 -0.32
78 AT2G34050 INVOLVED IN: protein complex assembly; LOCATED IN:
mitochondrion, chloroplast; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 9 growth stages; CONTAINS
InterPro DOMAIN/s: ATP11 (InterPro:IPR010591); Has 304
Blast hits to 304 proteins in 167 species: Archae - 0;
Bacteria - 0; Metazoa - 101; Fungi - 112; Plants - 39;
Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).		 -0.7 0.33 -0.32
79 AT3G13620 Amino acid permease family protein 0.7 0.31 -0.32
80 AT4G32940 gamma vacuolar processing enzyme gamma vacuolar processing enzyme,
GAMMAVPE		 0.7 0.32 -0.32
81 AT3G16800 Protein phosphatase 2C family protein 0.69 0.29 -0.3
82 AT3G04230 Ribosomal protein S5 domain 2-like superfamily protein -0.69 0.31 -0.31
83 AT2G42530 cold regulated 15b cold regulated 15b 0.69 0.3 -0.3
84 AT3G05880 Low temperature and salt responsive protein family RARE-COLD-INDUCIBLE 2A 0.69 0.32 -0.29
85 AT2G42540 cold-regulated 15a COR15, cold-regulated 15a 0.69 0.31 -0.32
86 AT3G14840 Leucine-rich repeat transmembrane protein kinase -0.69 0.31 -0.31
87 AT5G65650 Protein of unknown function (DUF1195) -0.69 0.32 -0.3
88 AT2G36070 translocase inner membrane subunit 44-2 translocase inner membrane subunit
44-2, translocase inner membrane
subunit 44-2		 -0.69 0.33 -0.31
89 AT2G42450 alpha/beta-Hydrolases superfamily protein -0.69 0.29 -0.3
90 AT5G66050 Wound-responsive family protein 0.69 0.33 -0.3
91 AT3G25120 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 -0.68 0.3 -0.31
92 AT3G01560 Protein of unknown function (DUF1421) 0.68 0.32 -0.3
93 AT1G62430 CDP-diacylglycerol synthase 1 CDP-diacylglycerol synthase 1,
CDP-diacylglycerol synthase 1		 0.68 0.29 -0.3
94 AT2G19480 nucleosome assembly protein 1;2 nucleosome assembly protein 1;2,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 2		 -0.68 0.31 -0.31
95 AT5G66240 Transducin/WD40 repeat-like superfamily protein -0.68 0.33 -0.29
96 AT4G18270 translocase 11 ARABIDOPSIS THALIANA TRANSLOCASE
11, translocase 11		 0.68 0.31 -0.32
97 AT3G20560 PDI-like 5-3 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 12, PDI-like
5-3, PROTEIN DISULFIDE ISOMERASE
12, PDI-like 5-3		 -0.68 0.3 -0.29
98 AT1G78450 SOUL heme-binding family protein -0.67 0.29 -0.33
99 AT1G58190 receptor like protein 9 receptor like protein 9, receptor
like protein 9		 -0.67 0.34 -0.34
100 AT2G42710 Ribosomal protein L1p/L10e family -0.67 0.32 -0.32
101 AT1G10090 Early-responsive to dehydration stress protein (ERD4) 0.67 0.32 -0.32
102 AT4G15680 Thioredoxin superfamily protein -0.67 0.3 -0.3
103 AT3G20490 unknown protein; Has 754 Blast hits to 165 proteins in 64
species: Archae - 0; Bacteria - 48; Metazoa - 26; Fungi -
25; Plants - 36; Viruses - 0; Other Eukaryotes - 619
(source: NCBI BLink).		 -0.67 0.32 -0.31
104 AT2G37260 WRKY family transcription factor family protein ATWRKY44, DR. STRANGELOVE 1,
TRANSPARENT TESTA GLABRA 2, WRKY44		 0.67 0.31 -0.32
105 AT3G29575 ABI five binding protein 3 ABI five binding protein 3 0.67 0.32 -0.33
106 AT1G72750 translocase inner membrane subunit 23-2 translocase inner membrane subunit
23-2, translocase inner membrane
subunit 23-2		 -0.67 0.33 -0.32
107 AT5G62000 auxin response factor 2 ARF1-BINDING PROTEIN, auxin
response factor 2, HLS1
SUPPRESSOR, ORESARA 14		 0.67 0.32 -0.33
108 AT3G61100 Putative endonuclease or glycosyl hydrolase -0.67 0.31 -0.29
109 AT5G19040 isopentenyltransferase 5 Arabidopsis thaliana
ISOPENTENYLTRANSFERASE 5,
isopentenyltransferase 5		 -0.67 0.32 -0.32
110 AT5G39850 Ribosomal protein S4 -0.67 0.32 -0.31
111 AT5G47100 calcineurin B-like protein 9 ATCBL9, calcineurin B-like protein
9		 -0.67 0.31 -0.28
112 AT3G62940 Cysteine proteinases superfamily protein -0.67 0.32 -0.3
113 AT4G14100 transferases, transferring glycosyl groups -0.66 0.3 -0.32
114 AT3G02480 Late embryogenesis abundant protein (LEA) family protein 0.66 0.32 -0.31
115 AT3G25790 myb-like transcription factor family protein -0.66 0.34 -0.28
116 AT1G16870 mitochondrial 28S ribosomal protein S29-related -0.66 0.3 -0.3
117 AT1G22500 RING/U-box superfamily protein Arabidopsis thaliana Arabidopsis
toxicos en levadura 15,
Arabidopsis toxicos en levadura 15		 -0.66 0.31 -0.31
118 AT1G70590 F-box family protein 0.66 0.31 -0.32
119 AT1G09780 Phosphoglycerate mutase,
2,3-bisphosphoglycerate-independent		 2,3-biphosphoglycerate-independent
phosphoglycerate mutase 1		 -0.66 0.31 -0.31
120 AT2G24420 DNA repair ATPase-related 0.66 0.3 -0.3
121 AT5G67250 SKP1/ASK1-interacting protein 2 SKP1/ASK1-interacting protein 2,
VIER F-BOX PROTEINE 4		 0.66 0.32 -0.31
122 AT3G62700 multidrug resistance-associated protein 10 ATP-binding cassette C14,
multidrug resistance-associated
protein 10, multidrug
resistance-associated protein 10		 0.66 0.32 -0.34
123 AT5G53980 homeobox protein 52 homeobox protein 52, homeobox
protein 52		 -0.66 0.32 -0.35
124 AT3G47620 TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 TEOSINTE BRANCHED, cycloidea and
PCF (TCP) 14, TEOSINTE BRANCHED,
cycloidea and PCF (TCP) 14		 0.66 0.33 -0.31
125 AT5G20050 Protein kinase superfamily protein -0.66 0.31 -0.32
126 AT1G60470 galactinol synthase 4 galactinol synthase 4, galactinol
synthase 4		 0.66 0.32 -0.31
127 AT2G22500 uncoupling protein 5 PLANT UNCOUPLING MITOCHONDRIAL
PROTEIN 5, DICARBOXYLATE CARRIER
1, uncoupling protein 5		 0.66 0.31 -0.33
128 AT4G27730 oligopeptide transporter 1 ARABIDOPSIS THALIANA OLIGOPEPTIDE
TRANSPORTER 6, oligopeptide
transporter 1		 -0.65 0.3 -0.33
129 AT1G66070 Translation initiation factor eIF3 subunit -0.65 0.32 -0.33
130 AT1G77840 Translation initiation factor IF2/IF5 -0.65 0.31 -0.31
131 AT3G22750 Protein kinase superfamily protein -0.65 0.31 -0.31
132 AT2G28660 Chloroplast-targeted copper chaperone protein -0.65 0.31 -0.31
133 AT1G67480 Galactose oxidase/kelch repeat superfamily protein -0.65 0.31 -0.3
134 AT1G20410 Pseudouridine synthase family protein -0.65 0.33 -0.32
135 AT5G56300 gibberellic acid methyltransferase 2 gibberellic acid methyltransferase
2		 -0.65 0.3 -0.29
136 AT2G20510 translocase inner membrane subunit 44-1 translocase inner membrane subunit
44-1, translocase inner membrane
subunit 44-1		 -0.65 0.32 -0.32
137 AT5G05430 RNA-binding protein -0.65 0.32 -0.32
138 AT1G03010 Phototropic-responsive NPH3 family protein -0.65 0.32 -0.31
139 AT5G15610 Proteasome component (PCI) domain protein -0.64 0.3 -0.31
140 AT2G35900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 13 growth stages; Has 32 Blast hits to 32 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.64 0.28 -0.3
141 AT3G49000 RNA polymerase III subunit RPC82 family protein -0.64 0.29 -0.31
142 AT1G13300 myb-like transcription factor family protein HYPERSENSITIVITY TO LOW
PI-ELICITED PRIMARY ROOT
SHORTENING 1		 -0.64 0.3 -0.31
143 AT5G14040 phosphate transporter 3;1 phosphate transporter 3;1 -0.64 0.33 -0.32
144 AT3G46820 type one serine/threonine protein phosphatase 5 type one serine/threonine protein
phosphatase 5		 -0.64 0.3 -0.32
145 AT1G50110 D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily protein		 -0.64 0.33 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
146 C0003 α-Tocopherol - alpha-Tocopherol vitamin E biosynthesis 0.78 0.46 -0.43 C0003
147 C0176 MST_2406.9 - - - 0.77 0.49 -0.49
148 C0171 MST_2182.9 - - - 0.72 0.44 -0.45
149 C0169 MST_2105.7 - - - 0.7 0.43 -0.43
150 C0010 myo-Inositol-1-phosphate D,L-myo-Inositol-1-phosphate 1D-myo-Inositol (3)-phosphate myo-inositol biosynthesis,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) 		0.69 0.46 -0.47 C0010
151 C0200 Phosphatidylglycerol-32:0 - Phosphatidylglycerol-32:0 cardiolipin biosynthesis II,
linoleate biosynthesis I,
glycerophosphodiester degradation,
glutathione redox reactions I 		0.66 0.33 -0.36