AT3G09210 : plastid transcriptionally active 13
Query Information
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AGICode AT3G09210
Description plastid transcriptionally active 13
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 1 0.31 -0.31
2 AT3G52380 chloroplast RNA-binding protein 33 chloroplast RNA-binding protein
33, PIGMENT DEFECTIVE 322		 0.93 0.34 -0.32
3 AT2G33180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57
proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa -
0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
14 (source: NCBI BLink).		 0.93 0.31 -0.3
4 AT4G19100 Protein of unknown function (DUF3464) photosynthesis affected mutant 68 0.92 0.33 -0.32
5 AT1G35680 Ribosomal protein L21 chloroplast ribosomal protein L21 0.92 0.31 -0.33
6 AT2G43030 Ribosomal protein L3 family protein 0.92 0.29 -0.34
7 AT5G52970 thylakoid lumen 15.0 kDa protein 0.92 0.33 -0.31
8 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.91 0.34 -0.36
9 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.91 0.32 -0.31
10 AT4G38160 Mitochondrial transcription termination factor family
protein		 pigment defective 191 0.91 0.32 -0.32
11 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.91 0.32 -0.32
12 AT2G18710 SECY homolog 1 SECY homolog 1 0.91 0.32 -0.32
13 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.91 0.34 -0.33
14 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.91 0.3 -0.32
15 AT4G17600 Chlorophyll A-B binding family protein LIL3:1 0.9 0.31 -0.32
16 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.9 0.32 -0.32
17 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.9 0.31 -0.31
18 AT1G53520 Chalcone-flavanone isomerase family protein 0.9 0.33 -0.31
19 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.9 0.3 -0.3
20 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.9 0.32 -0.29
21 AT5G63050 embryo defective 2759 embryo defective 2759 0.9 0.32 -0.3
22 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.9 0.35 -0.33
23 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.89 0.3 -0.3
24 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.89 0.32 -0.3
25 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.89 0.31 -0.32
26 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.89 0.29 -0.32
27 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.89 0.3 -0.32
28 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.89 0.3 -0.31
29 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.89 0.31 -0.32
30 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13		 0.89 0.31 -0.32
31 AT2G28605 Photosystem II reaction center PsbP family protein 0.89 0.32 -0.29
32 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.89 0.32 -0.32
33 AT4G14890 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 2 0.89 0.31 -0.31
34 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.89 0.3 -0.32
35 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.89 0.31 -0.31
36 AT2G17972 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 14 growth stages;
Has 34 Blast hits to 34 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.89 0.32 -0.33
37 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.89 0.34 -0.31
38 AT2G21860 violaxanthin de-epoxidase-related 0.89 0.3 -0.29
39 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.88 0.3 -0.31
40 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.88 0.29 -0.29
41 AT5G10690 pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein		 0.88 0.32 -0.33
42 AT1G36390 Co-chaperone GrpE family protein 0.88 0.31 -0.3
43 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.88 0.32 -0.33
44 AT3G23700 Nucleic acid-binding proteins superfamily 0.88 0.32 -0.31
45 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.88 0.35 -0.3
46 AT3G05410 Photosystem II reaction center PsbP family protein 0.88 0.31 -0.3
47 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33		 ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33		 0.88 0.29 -0.32
48 AT5G44650 Encodes a chloroplast protein that induces tolerance to
multiple environmental stresses and reduces photooxidative
damage.		 Arabidopsis thaliana chloroplast
protein-enhancing stress
tolerance, chloroplast
protein-enhancing stress
tolerance, Ycf3-interacting
protein 1		 0.88 0.32 -0.3
49 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.88 0.34 -0.3
50 AT3G20230 Ribosomal L18p/L5e family protein 0.88 0.31 -0.33
51 AT5G54600 Translation protein SH3-like family protein 0.88 0.32 -0.31
52 AT1G69200 fructokinase-like 2 fructokinase-like 2 0.88 0.32 -0.32
53 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.88 0.3 -0.31
54 AT2G48070 resistance to phytophthora 1 RESISTANCE TO PHYTOPHTHORA 1 0.87 0.31 -0.32
55 AT5G36170 high chlorophyll fluorescent 109 ATPRFB, high chlorophyll
fluorescent 109		 0.87 0.31 -0.33
56 AT5G14100 non-intrinsic ABC protein 14 ATP-binding cassette I11,
ARABIDOPSIS THALIANANON-INTRINSIC
ABC PROTEIN 14, non-intrinsic ABC
protein 14		 0.87 0.32 -0.31
57 AT3G05600 alpha/beta-Hydrolases superfamily protein 0.87 0.3 -0.34
58 AT4G30580 Phospholipid/glycerol acyltransferase family protein ATS2, EMBRYO DEFECTIVE 1995,
lysophosphatidic acid
acyltransferase 1		 0.87 0.32 -0.31
59 AT3G56330 N2,N2-dimethylguanosine tRNA methyltransferase 0.87 0.32 -0.31
60 AT1G60600 UbiA prenyltransferase family protein ABERRANT CHLOROPLAST DEVELOPMENT 4 0.87 0.29 -0.32
61 AT5G07900 Mitochondrial transcription termination factor family
protein		 0.87 0.31 -0.3
62 AT4G30825 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.34 -0.32
63 AT2G47450 chloroplast signal recognition particle component (CAO) CHAOS, CHLOROPLAST SIGNAL
RECOGNITION PARTICLE 43		 0.86 0.33 -0.33
64 AT4G36390 Methylthiotransferase 0.86 0.3 -0.33
65 AT2G45270 glycoprotease 1 glycoprotease 1 0.86 0.29 -0.3
66 AT3G18390 CRS1 / YhbY (CRM) domain-containing protein embryo defective 1865 0.86 0.31 -0.34
67 AT1G31330 photosystem I subunit F photosystem I subunit F 0.86 0.33 -0.29
68 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.86 0.32 -0.32
69 AT4G14870 secE/sec61-gamma protein transport protein SECE1 0.86 0.33 -0.33
70 AT3G18680 Amino acid kinase family protein 0.86 0.32 -0.31
71 AT3G13180 NOL1/NOP2/sun family protein / antitermination NusB
domain-containing protein		 0.86 0.31 -0.31
72 AT1G29070 Ribosomal protein L34 0.86 0.34 -0.31
73 AT5G11270 overexpressor of cationic peroxidase 3 overexpressor of cationic
peroxidase 3		 0.86 0.33 -0.33
74 AT2G24090 Ribosomal protein L35 0.86 0.3 -0.32
75 AT1G51100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 26
Blast hits to 26 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.86 0.31 -0.31
76 AT5G15390 tRNA/rRNA methyltransferase (SpoU) family protein 0.86 0.32 -0.32
77 AT5G46420 16S rRNA processing protein RimM family 0.86 0.31 -0.3
78 AT4G13180 NAD(P)-binding Rossmann-fold superfamily protein -0.82 0.34 -0.3
79 AT1G50570 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.8 0.32 -0.31
80 AT4G37370 cytochrome P450, family 81, subfamily D, polypeptide 8 cytochrome P450, family 81,
subfamily D, polypeptide 8		 -0.8 0.33 -0.32
81 AT3G13310 Chaperone DnaJ-domain superfamily protein -0.79 0.35 -0.31
82 AT2G47800 multidrug resistance-associated protein 4 ATP-binding cassette C4, multidrug
resistance-associated protein 4,
EST3, multidrug
resistance-associated protein 4		 -0.79 0.31 -0.32
83 AT3G25610 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.79 0.31 -0.3
84 AT2G46150 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.78 0.34 -0.31
85 AT2G15490 UDP-glycosyltransferase 73B4 UDP-glycosyltransferase 73B4 -0.78 0.32 -0.32
86 AT5G06750 Protein phosphatase 2C family protein -0.77 0.32 -0.32
87 AT2G26300 G protein alpha subunit 1 ARABIDOPSIS THALIANA G PROTEIN
ALPHA SUBUNIT 1, G protein alpha
subunit 1, G PROTEIN ALPHA SUBUNIT
1		 -0.75 0.31 -0.31
88 AT1G33110 MATE efflux family protein -0.75 0.3 -0.32
89 AT5G61820 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: vacuole; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 15 growth
stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod
19 (InterPro:IPR011692); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.74 0.3 -0.31
90 AT5G63790 NAC domain containing protein 102 NAC domain containing protein 102,
NAC domain containing protein 102		 -0.74 0.34 -0.31
91 AT5G24090 chitinase A chitinase A, chitinase A -0.74 0.32 -0.31
92 AT3G57380 Glycosyltransferase family 61 protein -0.74 0.32 -0.31
93 AT5G20230 blue-copper-binding protein blue-copper-binding protein, BLUE
COPPER BINDING PROTEIN,
blue-copper-binding protein,
SENESCENCE ASSOCIATED GENE 14		 -0.74 0.35 -0.33
94 AT1G70530 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 cysteine-rich RLK (RECEPTOR-like
protein kinase) 3		 -0.74 0.32 -0.31
95 AT3G53480 pleiotropic drug resistance 9 ATP-binding cassette G37,
PLEIOTROPIC DRUG RESISTANCE 9,
pleiotropic drug resistance 9,
polar auxin transport inhibitor
sensitive 1		 -0.74 0.28 -0.33
96 AT1G22800 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.73 0.31 -0.31
97 AT1G77920 bZIP transcription factor family protein -0.73 0.34 -0.33
98 AT1G35260 MLP-like protein 165 MLP-like protein 165 -0.73 0.3 -0.35
99 AT3G05290 peroxisomal adenine nucleotide carrier 1 AtPNC1, peroxisomal adenine
nucleotide carrier 1		 -0.72 0.31 -0.31
100 AT1G02400 gibberellin 2-oxidase 6 Arabidopsis thaliana gibberellin
2-oxidase 4, ARABIDOPSIS THALIANA
GIBBERELLIN 2-OXIDASE 6,
DOWNSTREAM TARGET OF AGL15 1,
gibberellin 2-oxidase 6		 -0.71 0.32 -0.3
101 AT4G23190 cysteine-rich RLK (RECEPTOR-like protein kinase) 11 RECEPTOR LIKE PROTEIN KINASE 3,
cysteine-rich RLK (RECEPTOR-like
protein kinase) 11		 -0.71 0.32 -0.34
102 AT3G63500 Protein of unknown function (DUF1423) -0.71 0.32 -0.29
103 AT3G26460 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.71 0.33 -0.3
104 AT4G37290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to karrikin; LOCATED IN: endomembrane
system; EXPRESSED IN: cotyledon, hypocotyl, leaf; EXPRESSED
DURING: LP.04 four leaves visible; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G23270.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.7 0.33 -0.31
105 AT5G13320 Auxin-responsive GH3 family protein GH3-LIKE DEFENSE GENE 1, GRETCHEN
HAGEN 3.12, AVRPPHB SUSCEPTIBLE 3,
HOPW1-1-INTERACTING 3		 -0.7 0.31 -0.31
106 AT3G21070 NAD kinase 1 NAD KINASE 1, NAD kinase 1 -0.7 0.3 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
107 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.76 0.45 -0.44 C0051