AT3G11710 : lysyl-tRNA synthetase 1
Query Information
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AGICode AT3G11710
Description lysyl-tRNA synthetase 1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G11710 lysyl-tRNA synthetase 1 lysyl-tRNA synthetase 1 1 0.32 -0.32
2 AT1G66070 Translation initiation factor eIF3 subunit 0.9 0.3 -0.31
3 AT4G01560 Ribosomal RNA processing Brix domain protein maternal effect embryo arrest 49 0.9 0.32 -0.32
4 AT2G19480 nucleosome assembly protein 1;2 nucleosome assembly protein 1;2,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 2		 0.89 0.31 -0.31
5 AT2G44860 Ribosomal protein L24e family protein 0.87 0.32 -0.32
6 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.86 0.3 -0.29
7 AT5G61770 PETER PAN-like protein PETER PAN-like protein 0.86 0.33 -0.32
8 AT3G51800 metallopeptidase M24 family protein A. THALIANA ERBB-3 BINDING PROTEIN
1, ATG2, ERBB-3 BINDING PROTEIN 1		 0.86 0.3 -0.32
9 AT5G26710 Glutamyl/glutaminyl-tRNA synthetase, class Ic 0.85 0.31 -0.31
10 AT5G19820 ARM repeat superfamily protein embryo defective 2734 0.85 0.33 -0.29
11 AT3G62940 Cysteine proteinases superfamily protein 0.85 0.32 -0.3
12 AT5G35620 Eukaryotic initiation factor 4E protein EUKARYOTIC INITIATION FACTOR
(ISO)4E, EUKARYOTIC TRANSLATION
INITATION FACTOR 4E2, eukaryotic
translation Initiation Factor
isoform 4E, LSP, LOSS OF
SUSCEPTIBILITY TO POTYVIRUS 1		 0.84 0.31 -0.3
13 AT1G27390 translocase outer membrane 20-2 translocase outer membrane 20-2 0.84 0.31 -0.31
14 AT2G42710 Ribosomal protein L1p/L10e family 0.84 0.33 -0.3
15 AT3G23620 Ribosomal RNA processing Brix domain protein 0.84 0.3 -0.32
16 AT3G13920 eukaryotic translation initiation factor 4A1 eukaryotic translation initiation
factor 4A1, RH4, TIF4A1		 0.84 0.31 -0.31
17 AT1G31660 CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955);
Has 475 Blast hits to 467 proteins in 210 species: Archae -
0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55;
Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).		 0.84 0.31 -0.31
18 AT4G02220 zinc finger (MYND type) family protein / programmed cell
death 2 C-terminal domain-containing protein		 0.83 0.29 -0.32
19 AT5G57280 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 root initiation defective 2 0.83 0.33 -0.31
20 AT3G20050 T-complex protein 1 alpha subunit T-complex protein 1 alpha subunit,
T-complex protein 1 alpha subunit		 0.83 0.32 -0.31
21 AT4G20440 small nuclear ribonucleoprotein associated protein B small nuclear ribonucleoprotein
associated protein B		 0.83 0.31 -0.32
22 AT1G12270 stress-inducible protein, putative Hop1 0.83 0.33 -0.3
23 AT2G40290 Eukaryotic translation initiation factor 2 subunit 1 0.83 0.29 -0.31
24 AT3G57290 eukaryotic translation initiation factor 3E ATEIF3E-1, ATINT6, eukaryotic
translation initiation factor 3E,
INT-6, INT6, TIF3E1		 0.82 0.32 -0.29
25 AT3G06930 protein arginine methyltransferase 4B ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 4B,
protein arginine methyltransferase
4B		 0.82 0.33 -0.31
26 AT5G41520 RNA binding Plectin/S10 domain-containing protein 0.82 0.33 -0.31
27 AT4G10620 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.82 0.31 -0.31
28 AT2G34260 transducin family protein / WD-40 repeat family protein human WDR55 (WD40 repeat) homolog 0.82 0.31 -0.32
29 AT2G32220 Ribosomal L27e protein family 0.82 0.32 -0.3
30 AT1G79650 Rad23 UV excision repair protein family Arabidopsis thaliana aldehyde
oxidase 1, RADIATION SENSITIVE23B		 0.82 0.34 -0.34
31 AT3G13230 RNA-binding KH domain-containing protein 0.82 0.32 -0.32
32 AT1G56110 homolog of nucleolar protein NOP56 homolog of nucleolar protein NOP56 0.81 0.3 -0.33
33 AT1G76160 SKU5 similar 5 SKU5 similar 5 0.81 0.32 -0.33
34 AT1G16870 mitochondrial 28S ribosomal protein S29-related 0.81 0.31 -0.33
35 AT3G49080 Ribosomal protein S5 domain 2-like superfamily protein 0.81 0.3 -0.33
36 AT4G28450 nucleotide binding;protein binding 0.81 0.31 -0.31
37 AT5G61020 evolutionarily conserved C-terminal region 3 evolutionarily conserved
C-terminal region 3		 0.81 0.34 -0.33
38 AT3G23940 dehydratase family 0.8 0.3 -0.35
39 AT2G17670 Tetratricopeptide repeat (TPR)-like superfamily protein 0.8 0.32 -0.3
40 AT4G38710 glycine-rich protein 0.8 0.29 -0.31
41 AT1G34130 staurosporin and temperature sensitive 3-like b staurosporin and temperature
sensitive 3-like b		 0.8 0.32 -0.32
42 AT1G55900 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 embryo defective 1860, TIM50 0.8 0.29 -0.32
43 AT2G19540 Transducin family protein / WD-40 repeat family protein 0.8 0.3 -0.33
44 AT5G62440 Protein of unknown function (DUF3223) 0.8 0.33 -0.31
45 AT3G61140 26S proteasome, regulatory subunit Rpn7;Proteasome
component (PCI) domain		 ARABIDOPSIS THALIANA FUSCA 6,
SHAGGY-LIKE KINASE 31,
CONSTITUTIVE PHOTOMORPHOGENIC 11,
COP9 SIGNALOSOME SUBUNIT 1, EMBRYO
DEFECTIVE 78, FUSCA 6, SHAGGY-LIKE
KINASE 31		 0.8 0.32 -0.29
46 AT4G13940 S-adenosyl-L-homocysteine hydrolase S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE
1, EMBRYO DEFECTIVE 1395,
HOMOLOGY-DEPENDENT GENE SILENCING
1, MATERNAL EFFECT EMBRYO ARREST
58, S-ADENOSYL-L-HOMOCYSTEIN
HYDROLASE 1		 0.79 0.31 -0.34
47 AT5G16070 TCP-1/cpn60 chaperonin family protein 0.79 0.33 -0.3
48 AT3G55010 phosphoribosylformylglycinamidine cyclo-ligase, chloroplast
/ phosphoribosyl-aminoimidazole synthetase / AIR synthase
(PUR5)		 ATPURM, EMBRYO DEFECTIVE 2818,
PUR5		 0.79 0.32 -0.31
49 AT1G52930 Ribosomal RNA processing Brix domain protein 0.79 0.31 -0.33
50 AT5G57870 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G1		 0.79 0.32 -0.35
51 AT3G18165 modifier of snc1,4 Modifier of snc1,4 0.79 0.3 -0.32
52 AT5G14040 phosphate transporter 3;1 phosphate transporter 3;1 0.79 0.31 -0.31
53 AT3G56150 eukaryotic translation initiation factor 3C ATEIF3C-1, ATTIF3C1, eukaryotic
translation initiation factor 3C,
EIF3C-1, TIF3C1		 0.79 0.32 -0.33
54 AT1G30500 nuclear factor Y, subunit A7 nuclear factor Y, subunit A7 -0.79 0.31 -0.3
55 AT4G20020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G44780.1); Has 28928 Blast
hits to 16023 proteins in 1033 species: Archae - 4;
Bacteria - 4155; Metazoa - 15463; Fungi - 2938; Plants -
3091; Viruses - 205; Other Eukaryotes - 3072 (source: NCBI
BLink).		 0.79 0.32 -0.33
56 AT3G25940 TFIIB zinc-binding protein 0.78 0.31 -0.34
57 AT2G34570 PIN domain-like family protein maternal effect embryo arrest 21 0.78 0.3 -0.31
58 AT3G10250 Plant protein 1589 of unknown function -0.78 0.34 -0.31
59 AT5G57990 ubiquitin-specific protease 23 ubiquitin-specific protease 23 0.78 0.33 -0.29
60 AT5G66410 phosducin-like protein 3 homolog phosducin-like protein 3 homolog 0.78 0.32 -0.31
61 AT5G19300 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding,
OB-fold-like (InterPro:IPR016027), Protein of unknown
function DUF171 (InterPro:IPR003750); Has 3649 Blast hits
to 1964 proteins in 291 species: Archae - 113; Bacteria -
121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses -
4; Other Eukaryotes - 1703 (source: NCBI BLink).		 0.78 0.31 -0.34
62 AT5G44320 Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)		 0.78 0.29 -0.32
63 AT4G37090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.78 0.32 -0.31
64 AT4G23620 Ribosomal protein L25/Gln-tRNA synthetase,
anti-codon-binding domain		 0.78 0.33 -0.31
65 AT2G36690 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.78 0.31 -0.31
66 AT5G06360 Ribosomal protein S8e family protein 0.78 0.32 -0.33
67 AT2G36070 translocase inner membrane subunit 44-2 translocase inner membrane subunit
44-2, translocase inner membrane
subunit 44-2		 0.78 0.31 -0.33
68 AT4G12470 azelaic acid induced 1 azelaic acid induced 1 0.78 0.33 -0.31
69 AT5G26360 TCP-1/cpn60 chaperonin family protein 0.78 0.32 -0.29
70 AT3G22300 ribosomal protein S10 ribosomal protein S10 0.78 0.31 -0.34
71 AT4G26780 Co-chaperone GrpE family protein AR192, mitochondrial GrpE 2 0.78 0.32 -0.32
72 AT1G75200 flavodoxin family protein / radical SAM domain-containing
protein		 0.78 0.3 -0.34
73 AT4G23540 ARM repeat superfamily protein 0.78 0.32 -0.32
74 AT3G15790 methyl-CPG-binding domain 11 ATMBD11, methyl-CPG-binding domain
11		 -0.77 0.33 -0.32
75 AT1G64370 unknown protein; Has 773 Blast hits to 375 proteins in 118
species: Archae - 0; Bacteria - 97; Metazoa - 421; Fungi -
108; Plants - 31; Viruses - 0; Other Eukaryotes - 116
(source: NCBI BLink).		 -0.77 0.31 -0.31
76 AT3G19620 Glycosyl hydrolase family protein -0.75 0.31 -0.29
77 AT1G51140 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.74 0.29 -0.3
78 AT4G24450 phosphoglucan, water dikinase ATGWD2, GWD3, phosphoglucan, water
dikinase		 -0.73 0.28 -0.31
79 AT1G13090 cytochrome P450, family 71, subfamily B, polypeptide 28 cytochrome P450, family 71,
subfamily B, polypeptide 28		 -0.73 0.31 -0.3
80 AT4G19840 phloem protein 2-A1 phloem protein 2-A1, phloem
protein 2-A1, phloem protein 2-A1		 -0.73 0.29 -0.3
81 AT3G54290 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
N-terminal protein myristoylation; LOCATED IN: chloroplast;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE
cation-binding motif (InterPro:IPR012312); Has 59 Blast
hits to 59 proteins in 14 species: Archae - 0; Bacteria -
2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.71 0.31 -0.3
82 AT5G57350 H(+)-ATPase 3 H(+)-ATPase 3, ARABIDOPSIS
THALIANA ARABIDOPSIS H(+)-ATPASE,
H(+)-ATPase 3		 -0.71 0.3 -0.3
83 AT2G30790 photosystem II subunit P-2 photosystem II subunit P-2 -0.7 0.3 -0.32
84 AT3G15780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G52550.1); Has 20 Blast hits
to 20 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.7 0.31 -0.31
85 AT2G41870 Remorin family protein -0.7 0.32 -0.28
86 AT2G38790 unknown protein; Has 21 Blast hits to 21 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.7 0.3 -0.3
87 AT5G37670 HSP20-like chaperones superfamily protein -0.7 0.3 -0.31
88 AT3G14067 Subtilase family protein -0.69 0.3 -0.33
89 AT5G62000 auxin response factor 2 ARF1-BINDING PROTEIN, auxin
response factor 2, HLS1
SUPPRESSOR, ORESARA 14		 -0.69 0.31 -0.32
90 AT3G54390 sequence-specific DNA binding transcription factors -0.68 0.33 -0.3
91 AT2G39450 Cation efflux family protein ATMTP11, MTP11 -0.68 0.32 -0.32
92 AT3G03870 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G18130.1); Has 41 Blast hits
to 41 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.3 -0.3
93 AT3G23610 dual specificity protein phosphatase 1 dual specificity protein
phosphatase 1		 -0.67 0.33 -0.3
94 AT2G20770 GCR2-like 2 GCR2-like 2 -0.67 0.32 -0.31
95 AT5G45630 Protein of unknown function, DUF584 -0.65 0.34 -0.29
96 AT5G24750 UDP-Glycosyltransferase superfamily protein -0.65 0.3 -0.29
97 AT1G70590 F-box family protein -0.65 0.31 -0.33
98 AT4G08980 F-BOX WITH WD-40 2 F-BOX WITH WD-40 2 -0.64 0.32 -0.31
99 AT5G37360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 -0.64 0.32 -0.33
100 AT4G10250 HSP20-like chaperones superfamily protein ATHSP22.0 -0.63 0.3 -0.33
101 AT4G01280 Homeodomain-like superfamily protein -0.63 0.3 -0.31
102 AT1G68540 NAD(P)-binding Rossmann-fold superfamily protein cinnamoyl coA reductase-like 6,
tetraketide alpha-pyrone reductase
2		 -0.63 0.31 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
103 C0217 Putative glucosinole - - - 0.86 0.46 -0.46
104 C0111 Hexa-2-O-glycerol-β-galactopyranoside Hexa-2-O-gllycerol-β-D-galactopyranoside - - -0.78 0.47 -0.45
105 C0057 Anthranilic acid - Anthranilate tryptophan biosynthesis,
benzoylanthranilate biosynthesis 		-0.76 0.45 -0.46 C0057
106 C0142 Malonic acid - Malonate fatty acid biosynthesis (plant mitochondria) -0.66 0.32 -0.32 C0142
107 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II -0.64 0.29 -0.32 C0097