AT3G02290 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT3G02290
Description RING/U-box superfamily protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G02290 RING/U-box superfamily protein 1 0.29 -0.32
2 AT1G76930 extensin 4 EXTENSIN 1, extensin 4, extensin
1, extensin 4, OBP3-RESPONSIVE
GENE 5		 -0.77 0.34 -0.32
3 AT3G62820 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.74 0.32 -0.31
4 AT5G46240 potassium channel in Arabidopsis thaliana 1 potassium channel in Arabidopsis
thaliana 1		 0.74 0.3 -0.32
5 AT2G46580 Pyridoxamine 5'-phosphate oxidase family protein 0.74 0.32 -0.34
6 AT2G46030 ubiquitin-conjugating enzyme 6 ubiquitin-conjugating enzyme 6 0.73 0.33 -0.29
7 AT4G29670 atypical CYS HIS rich thioredoxin 2 atypical CYS HIS rich thioredoxin
2		 0.73 0.32 -0.33
8 AT5G60790 ABC transporter family protein ATP-binding cassette F1,
ARABIDOPSIS THALIANA GENERAL
CONTROL NON-REPRESSIBLE 1, GENERAL
CONTROL NON-REPRESSIBLE 1		 -0.73 0.33 -0.3
9 AT1G19700 BEL1-like homeodomain 10 BEL1-like homeodomain 10,
BEL1-LIKE HOMEODOMAIN 10		 0.73 0.3 -0.3
10 AT1G31170 sulfiredoxin SULFIREDOXIN, sulfiredoxin 0.72 0.35 -0.32
11 AT5G22280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G44280.1); Has 82 Blast hits to 82 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.72 0.3 -0.31
12 AT2G20230 Tetraspanin family protein 0.71 0.34 -0.32
13 AT5G19070 SNARE associated Golgi protein family 0.71 0.31 -0.29
14 AT4G25700 beta-hydroxylase 1 B1, BETA CAROTENOID HYDROXYLASE 1,
beta-hydroxylase 1, chy1		 0.71 0.31 -0.32
15 AT2G17300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G35320.1); Has 42 Blast
hits to 42 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.7 0.33 -0.32
16 AT5G03420 5'-AMP-activated protein kinase-related 0.7 0.31 -0.31
17 AT2G18770 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.7 0.34 -0.32
18 AT4G39770 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 trehalose-6-phosphate phosphatase
H		 0.7 0.32 -0.3
19 AT1G67280 Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily protein		 0.7 0.32 -0.34
20 AT3G04870 zeta-carotene desaturase PIGMENT DEFECTIVE EMBRYO 181,
SPONTANEOUS CELL DEATH 1,
zeta-carotene desaturase		 0.7 0.31 -0.32
21 AT1G11570 NTF2-like NTF2-like 0.69 0.3 -0.32
22 AT4G10770 oligopeptide transporter 7 ARABIDOPSIS THALIANA OLIGOPEPTIDE
TRANSPORTER 7, oligopeptide
transporter 7		 0.69 0.32 -0.33
23 AT1G09795 ATP phosphoribosyl transferase 2 ATP phosphoribosyl transferase 2,
ATP phosphoribosyl transferase 2,
HISN1B		 0.69 0.32 -0.32
24 AT4G16770 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.69 0.33 -0.33
25 AT1G51690 protein phosphatase 2A 55 kDa regulatory subunit B alpha
isoform		 protein phosphatase 2A 55 kDa
regulatory subunit B alpha
isoform, protein phosphatase 2A 55
kDa regulatory subunit B alpha
isoform		 0.69 0.3 -0.31
26 AT1G07640 Dof-type zinc finger DNA-binding family protein OBP2 0.68 0.34 -0.31
27 AT2G26540 uroporphyrinogen-III synthase family protein DOMAIN OF UNKNOWN FUNCTION 724 3,
ARABIDOPSIS THALIANA
UROPORPHYRINOGEN III SYNTHASE,
DOMAIN OF UNKNOWN FUNCTION 724 3,
HEMD, UROPORPHYRINOGEN III
SYNTHASE		 0.68 0.31 -0.3
28 AT1G54680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G27290.1); Has 200 Blast hits to 200 proteins in
57 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi -
0; Plants - 127; Viruses - 0; Other Eukaryotes - 14
(source: NCBI BLink).		 0.68 0.31 -0.3
29 AT5G44320 Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)		 -0.68 0.32 -0.31
30 AT5G06130 chaperone protein dnaJ-related 0.68 0.31 -0.31
31 AT2G40060 Clathrin light chain protein clathrin light chain 2 0.68 0.31 -0.32
32 AT5G16800 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.68 0.32 -0.33
33 AT3G13590 Cysteine/Histidine-rich C1 domain family protein 0.68 0.3 -0.32
34 AT3G10525 LOSS OF GIANT CELLS FROM ORGANS LOSS OF GIANT CELLS FROM ORGANS,
SIAMESE RELATED 1		 0.67 0.33 -0.31
35 AT5G54855 Pollen Ole e 1 allergen and extensin family protein 0.67 0.3 -0.33
36 AT5G10620 methyltransferases 0.67 0.31 -0.3
37 AT5G13740 zinc induced facilitator 1 zinc induced facilitator 1 0.67 0.34 -0.32
38 AT5G05250 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G56360.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.66 0.3 -0.32
39 AT3G15720 Pectin lyase-like superfamily protein -0.66 0.31 -0.28
40 AT5G60600 4-hydroxy-3-methylbut-2-enyl diphosphate synthase CHLOROPLAST BIOGENESIS 4,
CONSTITUTIVE SUBTILISIN 3, GCPE,
4-hydroxy-3-methylbut-2-enyl
diphosphate synthase, ISPG		 0.66 0.33 -0.33
41 AT1G78260 RNA-binding (RRM/RBD/RNP motifs) family protein 0.66 0.32 -0.32
42 AT4G24730 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.66 0.3 -0.31
43 AT2G46735 unknown protein; Has 14 Blast hits to 14 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.66 0.31 -0.29
44 AT1G75340 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.66 0.32 -0.3
45 AT5G26840 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.65 0.28 -0.33
46 AT1G69970 CLAVATA3/ESR-RELATED 26 CLAVATA3/ESR-RELATED 26 0.65 0.32 -0.31
47 AT1G67890 PAS domain-containing protein tyrosine kinase family
protein		 0.65 0.32 -0.32
48 AT5G44870 Disease resistance protein (TIR-NBS-LRR class) family LAZARUS 5, tolerance to Tobacco
ringspot virus 1		 0.65 0.31 -0.32
49 AT3G54860 Sec1/munc18-like (SM) proteins superfamily ATVPS33, VACUOLAR PROTEIN SORTING
33		 0.65 0.33 -0.34
50 AT1G78620 Protein of unknown function DUF92, transmembrane 0.65 0.3 -0.32
51 AT5G24660 response to low sulfur 2 RESPONSE TO LOW SULFUR 2 0.65 0.32 -0.31
52 AT2G05590 TLD-domain containing nucleolar protein 0.65 0.33 -0.31
53 AT1G08110 lactoylglutathione lyase family protein / glyoxalase I
family protein		 0.65 0.3 -0.32
54 AT1G77990 STAS domain / Sulfate transporter family AST56, SULPHATE TRANSPORTER 2;2 0.65 0.3 -0.3
55 AT2G39080 NAD(P)-binding Rossmann-fold superfamily protein EMBRYO DEFECTIVE 2799 0.65 0.32 -0.32
56 AT1G44770 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49710.3); Has 81 Blast hits
to 81 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.64 0.33 -0.3
57 AT3G02900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast
hits to 80 proteins in 21 species: Archae - 0; Bacteria -
4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.64 0.32 -0.29
58 AT1G72440 CCAAT-binding factor embryo sac development arrest 25,
SLOW WALKER2		 -0.64 0.31 -0.31
59 AT5G09740 histone acetyltransferase of the MYST family 2 histone acetyltransferase of the
MYST family 2		 0.64 0.3 -0.33
60 AT1G21310 extensin 3 extensin 3, extensin 3,
ROOT-SHOOT-HYPOCOTYL DEFECTIVE		 -0.64 0.32 -0.32
61 AT3G56460 GroES-like zinc-binding alcohol dehydrogenase family
protein		 0.64 0.3 -0.32
62 AT1G14780 MAC/Perforin domain-containing protein -0.64 0.33 -0.33
63 AT2G34770 fatty acid hydroxylase 1 ARABIDOPSIS FATTY ACID HYDROXYLASE
1, fatty acid hydroxylase 1		 0.64 0.3 -0.31
64 AT2G39370 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits
to 178 proteins in 53 species: Archae - 0; Bacteria - 58;
Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other
Eukaryotes - 14 (source: NCBI BLink).		 MEMBRANE-ASSOCIATED KINASE
REGULATOR 4		 -0.64 0.32 -0.33
65 AT2G27960 cyclin-dependent kinase-subunit 1 cyclin-dependent kinase-subunit 1,
CKS1AT		 0.64 0.31 -0.31
66 AT3G20570 early nodulin-like protein 9 AtENODL9, early nodulin-like
protein 9		 0.63 0.3 -0.31
67 AT1G33960 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 AVRRPT2-INDUCED GENE 1 -0.63 0.33 -0.33
68 AT5G03440 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G54880.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.63 0.32 -0.32
69 AT3G59010 pectin methylesterase 61 pectin methylesterase 61 0.63 0.31 -0.34
70 AT5G56600 profilin 3 PROFILIN 3, profilin 3 0.63 0.31 -0.32
71 AT5G65670 indole-3-acetic acid inducible 9 indole-3-acetic acid inducible 9 -0.63 0.32 -0.33
72 AT3G11530 Vacuolar protein sorting 55 (VPS55) family protein 0.63 0.3 -0.31
73 AT2G22740 SU(VAR)3-9 homolog 6 SET DOMAIN PROTEIN 23, SU(VAR)3-9
homolog 6		 0.63 0.31 -0.3
74 AT5G01840 ovate family protein 1 ARABIDOPSIS THALIANA OVATE FAMILY
PROTEIN 1, ovate family protein 1		 -0.63 0.31 -0.3
75 AT2G32280 Protein of unknown function (DUF1218) -0.63 0.32 -0.3
76 AT3G01850 Aldolase-type TIM barrel family protein 0.63 0.34 -0.36
77 AT5G58660 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.62 0.32 -0.3
78 AT5G17930 MIF4G domain-containing protein / MA3 domain-containing
protein		 -0.62 0.31 -0.29
79 AT1G33790 jacalin lectin family protein -0.62 0.32 -0.3
80 AT3G07130 purple acid phosphatase 15 PURPLE ACID PHOSPHATASE 15, purple
acid phosphatase 15		 -0.62 0.31 -0.31
81 AT1G34750 Protein phosphatase 2C family protein -0.62 0.32 -0.31
82 AT5G43780 Pseudouridine synthase/archaeosine transglycosylase-like
family protein		 APS4 -0.61 0.31 -0.33
83 AT5G50350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to oxidative stress; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 -0.61 0.33 -0.32
84 AT1G68120 basic pentacysteine 3 ATBPC3, basic pentacysteine 3 -0.61 0.32 -0.33
85 AT4G38440 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: RNA polymerase II-associated protein 1,
C-terminal (InterPro:IPR013929), RNA polymerase
II-associated protein 1, N-terminal (InterPro:IPR013930);
Has 276 Blast hits to 220 proteins in 102 species: Archae -
0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41;
Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).		 MINIYO -0.6 0.31 -0.31
86 AT5G52380 VASCULAR-RELATED NAC-DOMAIN 6 -0.6 0.32 -0.3
87 AT5G65630 global transcription factor group E7 global transcription factor group
E7		 -0.6 0.31 -0.31
88 AT4G32870 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.6 0.3 -0.34
89 AT2G02850 plantacyanin plantacyanin -0.59 0.32 -0.31
90 AT2G38770 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 EMBRYO DEFECTIVE 2765 -0.59 0.31 -0.31
91 AT1G52500 MUTM homolog-1 A. THALIANA
FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 1,
FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 2, MUTM homolog-1,
ATMMH-2, FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 1,
FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 2, MUTM homolog-1,
MMH-2		 -0.59 0.31 -0.29
92 AT1G13330 Arabidopsis Hop2 homolog Arabidopsis Hop2 homolog -0.59 0.32 -0.32
93 AT2G29220 Concanavalin A-like lectin protein kinase family protein -0.59 0.3 -0.3
94 AT1G71350 eukaryotic translation initiation factor SUI1 family
protein		 -0.58 0.29 -0.33
95 AT5G40780 lysine histidine transporter 1 lysine histidine transporter 1 -0.58 0.31 -0.32
96 AT3G14280 unknown protein; Has 51 Blast hits to 51 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.57 0.31 -0.32
97 AT3G48150 anaphase-promoting complex subunit 8 anaphase-promoting complex subunit
8, CDC23		 -0.57 0.3 -0.33
98 AT5G19700 MATE efflux family protein -0.57 0.31 -0.32
99 AT4G13660 pinoresinol reductase 2 ATPRR2, pinoresinol reductase 2 -0.57 0.31 -0.31
100 AT2G25620 DNA-binding protein phosphatase 1 DNA-binding protein phosphatase 1,
DNA-binding protein phosphatase 1		 -0.56 0.3 -0.29
101 AT4G33990 Tetratricopeptide repeat (TPR)-like superfamily protein embryo defective 2758 -0.56 0.32 -0.32
102 AT4G31750 HOPW1-1-interacting 2 HOPW1-1-interacting 2 -0.56 0.29 -0.33
103 AT1G05490 chromatin remodeling 31 chromatin remodeling 31 -0.56 0.33 -0.31
104 AT4G08150 KNOTTED-like from Arabidopsis thaliana BREVIPEDICELLUS, BREVIPEDICELLUS
1, KNOTTED-like from Arabidopsis
thaliana		 -0.55 0.33 -0.31
105 AT3G15170 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 54, ATNAC1, CUP-SHAPED
COTYLEDON1		 -0.55 0.33 -0.34
106 AT3G45600 tetraspanin3 tetraspanin3 -0.55 0.34 -0.31
107 AT2G25000 WRKY DNA-binding protein 60 ATWRKY60, WRKY DNA-binding protein
60		 -0.55 0.32 -0.31
108 AT5G14940 Major facilitator superfamily protein -0.55 0.29 -0.31
109 AT5G55050 GDSL-like Lipase/Acylhydrolase superfamily protein -0.55 0.3 -0.32
110 AT4G27290 S-locus lectin protein kinase family protein -0.55 0.34 -0.29
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
111 C0204 Phosphatidylglycerol-34:2 - Phosphatidylglycerol-34:2 cardiolipin biosynthesis II,
linoleate biosynthesis I,
glycerophosphodiester degradation,
glutathione redox reactions I 		0.86 0.45 -0.48 C0204
112 C0182 MST_2996.4 - - - 0.8 0.48 -0.43
113 C0035 4-Methoxyindol-3-ylmethylglucosinolate - 4-Methoxy-3-indolylmethyl glucosinolate glucosinolate biosynthesis from tryptophan,
indole glucosinolate breakdown (active in intact plant cell) 		-0.69 0.45 -0.42 C0035