AT3G04820 : -
Query Information
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AGICode AT3G04820
Description Pseudouridine synthase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G04820 Pseudouridine synthase family protein 1 0.33 -0.31
2 AT2G03820 nonsense-mediated mRNA decay NMD3 family protein 0.78 0.34 -0.32
3 AT5G42950 GYF domain-containing protein 0.77 0.32 -0.32
4 AT1G15440 periodic tryptophan protein 2 (PERIODIC TRYPTOPHAN PROTEIN 2,
periodic tryptophan protein 2		 0.77 0.32 -0.31
5 AT5G58760 damaged DNA binding 2 damaged DNA binding 2 0.75 0.32 -0.32
6 AT2G17510 ribonuclease II family protein EMBRYO DEFECTIVE 2763 0.75 0.29 -0.3
7 AT5G62190 DEAD box RNA helicase (PRH75) PRH75 0.75 0.32 -0.33
8 AT5G52820 WD-40 repeat family protein / notchless protein, putative 0.75 0.33 -0.31
9 AT3G13460 evolutionarily conserved C-terminal region 2 evolutionarily conserved
C-terminal region 2		 0.74 0.32 -0.32
10 AT2G36930 zinc finger (C2H2 type) family protein 0.73 0.29 -0.33
11 AT5G16750 Transducin family protein / WD-40 repeat family protein TORMOZEMBRYO DEFECTIVE 0.73 0.33 -0.34
12 AT5G62600 ARM repeat superfamily protein modifier of snc1-1, 14 0.72 0.3 -0.31
13 AT5G25800 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.71 0.32 -0.34
14 AT5G46920 Intron maturase, type II family protein 0.71 0.32 -0.32
15 AT5G02820 Spo11/DNA topoisomerase VI, subunit A protein BRASSINOSTEROID INSENSITIVE 5,
ROOT HAIRLESS 2		 0.71 0.32 -0.31
16 AT5G64270 splicing factor, putative 0.7 0.3 -0.3
17 AT1G79380 Ca(2)-dependent phospholipid-binding protein (Copine)
family		 -0.69 0.31 -0.28
18 AT1G04350 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.69 0.32 -0.3
19 AT2G28450 zinc finger (CCCH-type) family protein 0.69 0.32 -0.31
20 AT3G63400 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.69 0.31 -0.29
21 AT3G10940 dual specificity protein phosphatase (DsPTP1) family
protein		 LIKE SEX4 2 -0.68 0.33 -0.31
22 AT2G13540 ARM repeat superfamily protein ABA HYPERSENSITIVE 1, ATCBP80,
CAP-BINDING PROTEIN 80, ENSALADA		 0.68 0.3 -0.31
23 AT3G10650 BEST Arabidopsis thaliana protein match is:
nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast
hits to 31782 proteins in 2093 species: Archae - 202;
Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants -
1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI
BLink).		 AtNUP1, NUP1 0.68 0.31 -0.31
24 AT1G78020 Protein of unknown function (DUF581) -0.68 0.31 -0.33
25 AT2G37310 Pentatricopeptide repeat (PPR) superfamily protein 0.67 0.33 -0.33
26 AT2G36350 Protein kinase superfamily protein 0.67 0.32 -0.3
27 AT3G22670 Pentatricopeptide repeat (PPR) superfamily protein 0.67 0.32 -0.32
28 AT2G20340 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.67 0.31 -0.31
29 AT5G67150 HXXXD-type acyl-transferase family protein -0.67 0.31 -0.29
30 AT5G61370 Pentatricopeptide repeat (PPR) superfamily protein 0.67 0.32 -0.32
31 AT2G39120 Ubiquitin carboxyl-terminal hydrolase family protein what's this factor 9 0.67 0.32 -0.31
32 AT1G25320 Leucine-rich repeat protein kinase family protein 0.67 0.29 -0.32
33 AT3G26370 O-fucosyltransferase family protein 0.66 0.3 -0.31
34 AT2G42390 protein kinase C substrate, heavy chain-related -0.66 0.29 -0.31
35 AT5G44280 RING 1A ARABIDOPSIS THALIANA RING 1A, RING
1A		 0.66 0.34 -0.33
36 AT1G11390 Protein kinase superfamily protein 0.66 0.3 -0.33
37 AT5G23240 DNAJ heat shock N-terminal domain-containing protein -0.66 0.32 -0.35
38 AT1G73400 Pentatricopeptide repeat (PPR) superfamily protein 0.65 0.33 -0.32
39 AT1G23130 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.65 0.28 -0.31
40 AT4G12640 RNA recognition motif (RRM)-containing protein 0.64 0.34 -0.31
41 AT1G01510 NAD(P)-binding Rossmann-fold superfamily protein ANGUSTIFOLIA 0.64 0.3 -0.31
42 AT3G19000 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.64 0.32 -0.34
43 AT1G49480 related to vernalization1 1 related to vernalization1 1 -0.64 0.3 -0.3
44 AT5G09740 histone acetyltransferase of the MYST family 2 histone acetyltransferase of the
MYST family 2		 -0.64 0.32 -0.31
45 AT2G45740 peroxin 11D peroxin 11D -0.64 0.31 -0.29
46 AT3G16310 mitotic phosphoprotein N' end (MPPN) family protein 0.64 0.32 -0.31
47 AT1G79630 Protein phosphatase 2C family protein 0.64 0.33 -0.32
48 AT1G48560 unknown protein; Has 75 Blast hits to 71 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0;
Plants - 69; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.64 0.34 -0.33
49 AT3G01980 NAD(P)-binding Rossmann-fold superfamily protein -0.64 0.33 -0.3
50 AT3G06940 transposable element gene 0.63 0.32 -0.36
51 AT1G77180 chromatin protein family SKIP 0.63 0.34 -0.31
52 AT1G78550 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.63 0.32 -0.33
53 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 -0.63 0.33 -0.3
54 AT5G49500 Signal recognition particle, SRP54 subunit protein -0.62 0.32 -0.31
55 AT1G04860 ubiquitin-specific protease 2 ATUBP2, ubiquitin-specific
protease 2		 0.62 0.32 -0.31
56 AT5G52540 Protein of unknown function (DUF819) -0.62 0.33 -0.29
57 AT2G21185 unknown protein; Has 9 Blast hits to 9 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.61 0.31 -0.31
58 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family -0.61 0.32 -0.31
59 AT2G01680 Ankyrin repeat family protein -0.6 0.3 -0.3
60 AT2G21970 stress enhanced protein 2 stress enhanced protein 2 -0.6 0.33 -0.27
61 AT1G10650 SBP (S-ribonuclease binding protein) family protein -0.59 0.32 -0.33
62 AT2G39435 Phosphatidylinositol N-acetyglucosaminlytransferase subunit
P-related		 -0.59 0.3 -0.31
63 AT1G67870 glycine-rich protein -0.59 0.32 -0.29
64 AT4G15755 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.59 0.31 -0.3
65 AT3G43800 glutathione S-transferase tau 27 glutathione S-transferase tau 27,
glutathione S-transferase tau 27		 -0.59 0.32 -0.29
66 AT5G61440 atypical CYS HIS rich thioredoxin 5 atypical CYS HIS rich thioredoxin
5		 -0.57 0.33 -0.31
67 AT5G02560 histone H2A 12 histone H2A 12 -0.57 0.3 -0.31
68 AT4G31330 Protein of unknown function, DUF599 -0.57 0.34 -0.33
69 AT3G15353 metallothionein 3 ATMT3, metallothionein 3 -0.57 0.34 -0.31
70 AT4G18570 Tetratricopeptide repeat (TPR)-like superfamily protein -0.57 0.34 -0.33
71 AT2G34490 cytochrome P450, family 710, subfamily A, polypeptide 2 cytochrome P450, family 710,
subfamily A, polypeptide 2		 -0.56 0.32 -0.31
72 AT5G06280 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.56 0.3 -0.32
73 AT1G33330 Class I peptide chain release factor -0.55 0.3 -0.31
74 AT5G06130 chaperone protein dnaJ-related -0.55 0.31 -0.32
75 AT3G61120 AGAMOUS-like 13 AGAMOUS-like 13 -0.55 0.32 -0.34
76 AT3G53570 FUS3-complementing gene 1 FUS3-complementing gene 1, AME2,
FUS3-complementing gene 1		 -0.55 0.33 -0.31
77 AT2G29250 Concanavalin A-like lectin protein kinase family protein -0.55 0.32 -0.32
78 AT5G14970 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G14910.1); Has 579 Blast hits
to 397 proteins in 95 species: Archae - 0; Bacteria - 294;
Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other
Eukaryotes - 199 (source: NCBI BLink).		 -0.55 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
79 C0173 MST_2301.7 - - - 0.69 0.44 -0.42