AT3G05000 : -
Query Information
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AGICode AT3G05000
Description Transport protein particle (TRAPP) component
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G05000 Transport protein particle (TRAPP) component 1 0.32 -0.33
2 AT2G30410 tubulin folding cofactor A (KIESEL) KIESEL, TUBULIN FOLDING FACTOR A 0.88 0.3 -0.31
3 AT5G05010 clathrin adaptor complexes medium subunit family protein 0.84 0.34 -0.31
4 AT1G18440 Peptidyl-tRNA hydrolase family protein 0.84 0.31 -0.33
5 AT2G47580 spliceosomal protein U1A spliceosomal protein U1A 0.83 0.31 -0.33
6 AT3G23710 Tic22-like family protein translocon at the inner envelope
membrane of chloroplasts 22-III,
translocon at the inner envelope
membrane of chloroplasts 22-III		 0.83 0.31 -0.35
7 AT5G24650 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 0.82 0.32 -0.34
8 AT1G03150 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.82 0.31 -0.3
9 AT2G21290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 63 Blast hits to 63 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.82 0.31 -0.33
10 AT3G07910 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Reactive oxygen species modulator 1 (InterPro:IPR018450);
Has 192 Blast hits to 192 proteins in 80 species: Archae -
0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).		 0.81 0.32 -0.33
11 AT1G75560 zinc knuckle (CCHC-type) family protein 0.81 0.33 -0.32
12 AT2G21195 unknown protein; Has 28 Blast hits to 28 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.81 0.31 -0.32
13 AT3G16100 RAB GTPase homolog G3C ATRAB7D, RAB GTPase homolog G3C,
RAB GTPase homolog G3C		 0.81 0.32 -0.31
14 AT1G76160 SKU5 similar 5 SKU5 similar 5 0.8 0.32 -0.32
15 AT4G09720 RAB GTPase homolog G3A RAB GTPase homolog G3A, RAB GTPase
homolog G3A		 0.8 0.32 -0.32
16 AT1G74910 ADP-glucose pyrophosphorylase family protein 0.8 0.29 -0.32
17 AT2G31170 Cysteinyl-tRNA synthetase, class Ia family protein FIONA, cysteinyl t-RNA synthetase 0.8 0.32 -0.31
18 AT3G21200 proton gradient regulation 7 proton gradient regulation 7 0.79 0.32 -0.31
19 AT1G14810 semialdehyde dehydrogenase family protein 0.79 0.32 -0.33
20 AT3G17390 S-adenosylmethionine synthetase family protein METHIONINE ADENOSYLTRANSFERASE 4,
METHIONINE OVER-ACCUMULATOR 3,
S-ADENOSYLMETHIONINE SYNTHETASE 3		 0.79 0.32 -0.31
21 AT4G35000 ascorbate peroxidase 3 ascorbate peroxidase 3 0.79 0.3 -0.32
22 AT4G13600 Carbohydrate-binding X8 domain superfamily protein 0.79 0.31 -0.31
23 AT2G42770 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 0.78 0.31 -0.31
24 AT2G20140 AAA-type ATPase family protein regulatory particle AAA-ATPase 2b 0.78 0.31 -0.3
25 AT1G69030 BSD domain-containing protein 0.78 0.3 -0.32
26 AT2G43640 Signal recognition particle, SRP9/SRP14 subunit 0.78 0.29 -0.32
27 AT3G53580 diaminopimelate epimerase family protein 0.78 0.31 -0.33
28 AT2G03350 Protein of unknown function, DUF538 0.78 0.33 -0.33
29 AT1G26630 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1)
protein		 EUKARYOTIC ELONGATION FACTOR 5A-2,
EUKARYOTIC ELONGATION FACTOR 5A-2,
FUMONISIN B1-RESISTANT12		 0.78 0.32 -0.34
30 AT5G17560 BolA-like family protein 0.78 0.32 -0.32
31 AT1G60780 Clathrin adaptor complexes medium subunit family protein HAPLESS 13 0.78 0.33 -0.29
32 AT4G35490 mitochondrial ribosomal protein L11 mitochondrial ribosomal protein
L11		 0.77 0.32 -0.31
33 AT1G15140 FAD/NAD(P)-binding oxidoreductase 0.77 0.3 -0.29
34 AT4G09320 Nucleoside diphosphate kinase family protein NDPK1 0.77 0.32 -0.32
35 AT1G78040 Pollen Ole e 1 allergen and extensin family protein 0.77 0.33 -0.32
36 AT5G58030 Transport protein particle (TRAPP) component 0.77 0.32 -0.32
37 AT5G32450 RNA binding (RRM/RBD/RNP motifs) family protein 0.77 0.31 -0.3
38 AT4G09730 RH39 RH39 0.77 0.31 -0.32
39 AT1G04220 3-ketoacyl-CoA synthase 2 3-ketoacyl-CoA synthase 2 -0.77 0.31 -0.31
40 AT5G19760 Mitochondrial substrate carrier family protein 0.77 0.32 -0.3
41 AT1G05810 RAB GTPase homolog A5E ARA, ARA-1, ATRAB11D, ARABIDOPSIS
THALIANA RAB GTPASE HOMOLOG A5E,
RAB GTPase homolog A5E		 0.77 0.31 -0.3
42 AT5G15350 early nodulin-like protein 17 AtENODL17, early nodulin-like
protein 17		 0.76 0.33 -0.29
43 AT5G25080 Sas10/Utp3/C1D family 0.76 0.31 -0.31
44 AT2G18910 hydroxyproline-rich glycoprotein family protein 0.76 0.33 -0.3
45 AT2G01580 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G07510.2); Has 129 Blast hits
to 129 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.76 0.31 -0.31
46 AT2G46540 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.76 0.33 -0.31
47 AT1G02140 mago nashi family protein HAPLESS 1, MAGO NASHI, MATERNAL
EFFECT EMBRYO ARREST 63		 0.76 0.32 -0.31
48 AT2G27030 calmodulin 5 ACAM-2, calmodulin 5 0.76 0.3 -0.34
49 AT4G00810 60S acidic ribosomal protein family 0.76 0.33 -0.31
50 AT3G04830 Protein prenylyltransferase superfamily protein 0.75 0.31 -0.31
51 AT5G23140 nuclear-encoded CLP protease P7 CLPP2, nuclear-encoded CLP
protease P7		 0.75 0.34 -0.3
52 AT4G14420 HR-like lesion-inducing protein-related 0.75 0.33 -0.31
53 AT5G63560 HXXXD-type acyl-transferase family protein -0.75 0.31 -0.33
54 AT4G13720 Inosine triphosphate pyrophosphatase family protein 0.75 0.3 -0.32
55 AT1G70490 Ras-related small GTP-binding family protein ARFA1D, ATARFA1D 0.75 0.31 -0.31
56 AT1G15370 SNARE-like superfamily protein 0.75 0.33 -0.3
57 AT5G06770 KH domain-containing protein / zinc finger (CCCH type)
family protein		 0.75 0.32 -0.31
58 AT1G56260 unknown protein; Has 32 Blast hits to 32 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 MERISTEM DISORGANIZATION 1 0.75 0.32 -0.32
59 AT2G38550 Transmembrane proteins 14C 0.74 0.29 -0.32
60 AT1G12310 Calcium-binding EF-hand family protein 0.74 0.31 -0.31
61 AT1G27310 nuclear transport factor 2A nuclear transport factor 2A 0.74 0.3 -0.32
62 AT1G26160 Metal-dependent phosphohydrolase 0.74 0.29 -0.32
63 AT5G65430 general regulatory factor 8 14-3-3 PROTEIN G-BOX FACTOR14
KAPPA, GF14 KAPPA, general
regulatory factor 8		 0.74 0.33 -0.29
64 AT1G23490 ADP-ribosylation factor 1 ADP-ribosylation factor 1,
ADP-RIBOSYLATION FACTOR,
ADP-ribosylation factor 1,
ADP-RIBOSYLATION FACTOR 1A		 0.74 0.32 -0.33
65 AT3G49560 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 0.73 0.31 -0.33
66 AT3G07470 Protein of unknown function, DUF538 0.73 0.33 -0.3
67 AT2G30010 TRICHOME BIREFRINGENCE-LIKE 45 TRICHOME BIREFRINGENCE-LIKE 45 0.73 0.32 -0.31
68 AT3G49720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, Golgi apparatus, plasma
membrane, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.73 0.32 -0.31
69 AT5G41950 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.31 -0.33
70 AT2G19900 NADP-malic enzyme 1 Arabidopsis thaliana NADP-malic
enzyme 1, NADP-malic enzyme 1		 -0.73 0.31 -0.32
71 AT3G51600 lipid transfer protein 5 lipid transfer protein 5 0.73 0.3 -0.3
72 AT1G11650 RNA-binding (RRM/RBD/RNP motifs) family protein ATRBP45B, RBP45B 0.73 0.31 -0.33
73 AT1G09910 Rhamnogalacturonate lyase family protein -0.73 0.31 -0.31
74 AT5G53890 phytosylfokine-alpha receptor 2 AtPSKR2, phytosylfokine-alpha
receptor 2		 -0.72 0.29 -0.33
75 AT2G18050 histone H1-3 histone H1-3 -0.72 0.33 -0.31
76 AT5G44310 Late embryogenesis abundant protein (LEA) family protein -0.72 0.32 -0.32
77 AT3G58550 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.71 0.32 -0.32
78 AT3G20120 cytochrome P450, family 705, subfamily A, polypeptide 21 cytochrome P450, family 705,
subfamily A, polypeptide 21		 -0.71 0.3 -0.3
79 AT3G57540 Remorin family protein -0.71 0.3 -0.31
80 AT3G24310 myb domain protein 305 MYB DOMAIN PROTEIN 71, myb domain
protein 305		 -0.71 0.31 -0.3
81 AT4G05100 myb domain protein 74 myb domain protein 74, myb domain
protein 74		 -0.71 0.31 -0.31
82 AT3G63210 Protein of unknown function (DUF581) MEDIATOR OF ABA-REGULATED DORMANCY
1		 -0.7 0.29 -0.33
83 AT5G43840 heat shock transcription factor A6A heat shock transcription factor
A6A, heat shock transcription
factor A6A		 -0.7 0.32 -0.29
84 AT2G18370 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.7 0.32 -0.32
85 AT2G47810 nuclear factor Y, subunit B5 nuclear factor Y, subunit B5 -0.69 0.33 -0.33
86 AT1G14730 Cytochrome b561/ferric reductase transmembrane protein
family		 -0.69 0.29 -0.34
87 AT1G23120 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.68 0.33 -0.33
88 AT5G62490 HVA22 homologue B ARABIDOPSIS THALIANA HVA22
HOMOLOGUE B, HVA22 homologue B		 -0.68 0.31 -0.3
89 AT3G44540 fatty acid reductase 4 fatty acid reductase 4 -0.68 0.32 -0.32
90 AT2G22660 Protein of unknown function (duplicated DUF1399) -0.68 0.31 -0.32
91 AT1G78780 pathogenesis-related family protein -0.65 0.33 -0.32
92 AT1G26450 Carbohydrate-binding X8 domain superfamily protein -0.65 0.31 -0.3
93 AT2G35300 Late embryogenesis abundant protein, group 1 protein late embryogenesis abundant 4-2,
late embryogenesis abundant 18,
late embryogenesis abundant 4-2		 -0.65 0.31 -0.34
94 AT4G20880 ethylene-responsive nuclear protein / ethylene-regulated
nuclear protein (ERT2)		 -0.65 0.32 -0.31
95 AT3G25990 Homeodomain-like superfamily protein -0.65 0.29 -0.32
96 AT2G31990 Exostosin family protein -0.65 0.32 -0.32
97 AT4G13810 receptor like protein 47 receptor like protein 47, receptor
like protein 47		 -0.65 0.32 -0.32
98 AT1G55740 seed imbibition 1 seed imbibition 1, raffinose
synthase 1, seed imbibition 1		 -0.65 0.34 -0.29
99 AT1G69270 receptor-like protein kinase 1 receptor-like protein kinase 1 -0.64 0.32 -0.33
100 AT5G65240 Leucine-rich repeat protein kinase family protein -0.64 0.32 -0.31
101 AT5G05160 Leucine-rich repeat protein kinase family protein REDUCED IN LATERAL GROWTH1 -0.63 0.29 -0.31
102 AT2G48060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: shoot, sperm cell;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other
Eukaryotes - 105 (source: NCBI BLink).		 -0.62 0.3 -0.3
103 AT2G38490 CBL-interacting protein kinase 22 CBL-interacting protein kinase 22,
SNF1-RELATED PROTEIN KINASE 3.19		 -0.61 0.33 -0.33
104 AT5G09530 hydroxyproline-rich glycoprotein family protein Pro-Glu-Leu|Ile|Val-Pro-Lys 1,
proline-rich protein 10		 -0.61 0.31 -0.31
105 AT4G16240 unknown protein; Has 17010 Blast hits to 4557 proteins in
509 species: Archae - 32; Bacteria - 2889; Metazoa - 6537;
Fungi - 648; Plants - 4769; Viruses - 447; Other Eukaryotes
- 1688 (source: NCBI BLink).		 -0.61 0.34 -0.32
106 AT5G57840 HXXXD-type acyl-transferase family protein -0.61 0.32 -0.33
107 AT4G18425 Protein of unknown function (DUF679) -0.61 0.33 -0.3
108 AT1G24430 HXXXD-type acyl-transferase family protein -0.61 0.31 -0.31
109 AT4G19810 Glycosyl hydrolase family protein with chitinase insertion
domain		 class V chitinase -0.61 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
110 C0123 Isoleucine D,L-Isoleucine L-Isoleucine tRNA charging,
isoleucine biosynthesis I (from threonine),
jasmonoyl-amino acid conjugates biosynthesis I,
isoleucine degradation I 		-0.82 0.48 -0.43 C0123
111 C0189 Nicotinic acid - Nicotinate pyridine nucleotide cycling (plants),
aldoxime degradation 		-0.74 0.33 -0.34 C0189
112 C0052 Adenosine - Adenosine adenine and adenosine salvage VI,
S-adenosyl-L-methionine cycle II,
cytokinins degradation,
methionine degradation I (to homocysteine),
adenine and adenosine salvage II 		-0.67 0.33 -0.32 C0052
113 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		-0.63 0.31 -0.31 C0137