AT3G04890 : -
Query Information
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AGICode AT3G04890
Description Uncharacterized conserved protein (DUF2358)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G04890 Uncharacterized conserved protein (DUF2358) 1 0.31 -0.32
2 AT1G22540 Major facilitator superfamily protein 0.74 0.32 -0.3
3 AT5G14570 high affinity nitrate transporter 2.7 high affinity nitrate transporter
2.7, high affinity nitrate
transporter 2.7		 -0.73 0.33 -0.3
4 AT1G50310 sugar transporter 9 SUGAR TRANSPORTER 9, sugar
transporter 9		 0.71 0.33 -0.31
5 AT2G46220 Uncharacterized conserved protein (DUF2358) 0.69 0.3 -0.31
6 AT3G26280 cytochrome P450, family 71, subfamily B, polypeptide 4 cytochrome P450, family 71,
subfamily B, polypeptide 4		 0.68 0.33 -0.3
7 AT3G12570 FYD FYD -0.68 0.32 -0.32
8 AT5G53290 cytokinin response factor 3 cytokinin response factor 3 -0.67 0.31 -0.31
9 AT1G19170 Pectin lyase-like superfamily protein 0.67 0.28 -0.32
10 AT4G38530 phospholipase C1 phospholipase C1, phospholipase C1 0.66 0.31 -0.3
11 AT5G58760 damaged DNA binding 2 damaged DNA binding 2 -0.65 0.33 -0.29
12 AT5G14880 Potassium transporter family protein 0.65 0.32 -0.31
13 AT1G80040 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system
component Cue (InterPro:IPR003892); BEST Arabidopsis
thaliana protein match is: Ubiquitin system component Cue
protein (TAIR:AT5G32440.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.65 0.32 -0.29
14 AT5G16150 plastidic GLC translocator GLUCOSE TRANSPORTER 1, plastidic
GLC translocator		 0.65 0.32 -0.33
15 AT3G09840 cell division cycle 48 ATCDC48, cell division cycle 48,
CDC48A		 -0.65 0.31 -0.32
16 AT5G26190 Cysteine/Histidine-rich C1 domain family protein 0.65 0.3 -0.33
17 AT5G07520 glycine-rich protein 18 ATGRP-8, ATGRP18, glycine-rich
protein 18		 0.64 0.3 -0.3
18 AT4G35050 Transducin family protein / WD-40 repeat family protein MULTICOPY SUPPRESSOR OF IRA1 3,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP C 3		 -0.64 0.33 -0.32
19 AT4G14690 Chlorophyll A-B binding family protein EARLY LIGHT-INDUCIBLE PROTEIN 2 -0.64 0.3 -0.3
20 AT4G03120 C2H2 and C2HC zinc fingers superfamily protein -0.64 0.32 -0.32
21 AT3G43510 transposable element gene -0.64 0.31 -0.29
22 AT1G68530 3-ketoacyl-CoA synthase 6 ECERIFERUM 6, CUTICULAR 1, G2,
3-ketoacyl-CoA synthase 6,
POLLEN-PISTIL INCOMPATIBILITY 1		 0.63 0.32 -0.32
23 AT3G30710 transposable element gene 0.63 0.3 -0.34
24 AT1G75660 5'-3' exoribonuclease 3 5'-3' EXORIBONUCLEASE 3, 5'-3'
exoribonuclease 3		 -0.63 0.32 -0.32
25 AT3G16060 ATP binding microtubule motor family protein 0.63 0.3 -0.3
26 AT5G27395 Mitochondrial inner membrane translocase complex, subunit
Tim44-related protein		 -0.63 0.33 -0.33
27 AT2G42350 RING/U-box superfamily protein -0.62 0.31 -0.34
28 AT3G43240 ARID/BRIGHT DNA-binding domain-containing protein -0.62 0.33 -0.3
29 AT3G11280 Duplicated homeodomain-like superfamily protein 0.62 0.33 -0.31
30 AT5G20700 Protein of unknown function (DUF581) 0.62 0.32 -0.34
31 AT2G30000 PHF5-like protein -0.62 0.3 -0.3
32 AT3G63400 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 -0.62 0.3 -0.31
33 AT1G29790 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.62 0.31 -0.31
34 AT2G18260 syntaxin of plants 112 ATSYP112, syntaxin of plants 112 0.61 0.3 -0.33
35 AT1G35470 SPla/RYanodine receptor (SPRY) domain-containing protein 0.61 0.31 -0.32
36 AT4G30150 CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA
processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast
hits to 49 proteins in 21 species: Archae - 0; Bacteria -
2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other
Eukaryotes - 7 (source: NCBI BLink).		 -0.61 0.32 -0.31
37 AT5G17180 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.61 0.31 -0.32
38 AT1G78950 Terpenoid cyclases family protein 0.61 0.31 -0.32
39 AT4G03940 unknown protein; Has 8 Blast hits to 8 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink).		 0.6 0.31 -0.32
40 AT2G45550 cytochrome P450, family 76, subfamily C, polypeptide 4 cytochrome P450, family 76,
subfamily C, polypeptide 4		 0.6 0.34 -0.31
41 AT4G30860 SET domain group 4 ASH1-related 3, SET domain group 4 -0.6 0.3 -0.32
42 AT1G53160 squamosa promoter binding protein-like 4 squamosa promoter binding
protein-like 4		 0.6 0.32 -0.29
43 AT3G15351 unknown protein; Has 50 Blast hits to 50 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0;
Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.6 0.3 -0.31
44 AT4G25980 Peroxidase superfamily protein 0.6 0.3 -0.32
45 AT5G49400 zinc knuckle (CCHC-type) family protein -0.6 0.32 -0.33
46 AT2G24140 Protein of unknown function, DUF593 -0.6 0.33 -0.3
47 AT2G34150 SCAR family protein ATRANGAP2, ATSCAR1, SCAR1,
WISKOTT-ALDRICH SYNDROME PROTEIN
FAMILY VERPROLIN HOMOLOGOUS
PROTEIN 1		 0.59 0.31 -0.32
48 AT1G19835 Plant protein of unknown function (DUF869) 0.59 0.33 -0.32
49 AT5G13850 nascent polypeptide-associated complex subunit alpha-like
protein 3		 nascent polypeptide-associated
complex subunit alpha-like protein
3		 -0.59 0.34 -0.33
50 AT1G69100 Eukaryotic aspartyl protease family protein 0.59 0.32 -0.31
51 AT4G02570 cullin 1 cullin 1, AUXIN RESISTANT 6,
cullin 1		 -0.59 0.31 -0.29
52 AT3G50440 methyl esterase 10 ARABIDOPSIS THALIANA METHYL
ESTERASE 10, methyl esterase 10		 0.58 0.33 -0.33
53 ATMG00110 cytochrome C biogenesis 206 ATP-binding cassette I2,
cytochrome C biogenesis 206		 -0.58 0.29 -0.31
54 AT5G53400 HSP20-like chaperones superfamily protein BOBBER1 -0.58 0.32 -0.34
55 AT1G12650 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF947 (InterPro:IPR009292); Has 700 Blast
hits to 631 proteins in 192 species: Archae - 0; Bacteria -
32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0;
Other Eukaryotes - 302 (source: NCBI BLink).		 -0.58 0.29 -0.32
56 AT3G09410 Pectinacetylesterase family protein 0.58 0.3 -0.33
57 AT3G46400 Leucine-rich repeat protein kinase family protein 0.58 0.32 -0.31
58 AT5G03000 Galactose oxidase/kelch repeat superfamily protein 0.58 0.3 -0.32
59 AT1G48270 G-protein-coupled receptor 1 G-protein-coupled receptor 1 -0.57 0.3 -0.33
60 AT2G44020 Mitochondrial transcription termination factor family
protein		 -0.57 0.31 -0.32
61 AT3G12070 RAB geranylgeranyl transferase beta subunit 2 RAB geranylgeranyl transferase
beta subunit 2, RAB geranylgeranyl
transferase beta subunit 2		 -0.57 0.32 -0.32
62 AT2G35530 basic region/leucine zipper transcription factor 16 AtbZIP16, basic region/leucine
zipper transcription factor 16		 -0.57 0.31 -0.34
63 AT1G30070 SGS domain-containing protein -0.57 0.31 -0.31
64 AT3G12130 KH domain-containing protein / zinc finger (CCCH type)
family protein		 -0.57 0.29 -0.3
65 AT5G24270 Calcium-binding EF-hand family protein SALT OVERLY SENSITIVE 3,
CALCINEURIN B-LIKE PROTEIN 4, SALT
OVERLY SENSITIVE 3		 -0.56 0.33 -0.32
66 AT2G40950 Basic-leucine zipper (bZIP) transcription factor family
protein		 BZIP17 -0.56 0.32 -0.31
67 AT1G66660 Protein with RING/U-box and TRAF-like domains -0.56 0.32 -0.31
68 AT2G41160 Ubiquitin-associated (UBA) protein -0.56 0.33 -0.3
69 AT2G32740 galactosyltransferase 13 ARABIDOPSIS GALACTOSYLTRANSFERASE
13, galactosyltransferase 13		 -0.56 0.3 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
70 C0215 PR_MST_2527.1 - - - -0.72 0.41 -0.43
71 C0158 MST_1480.5 - - - 0.68 0.43 -0.45
72 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.64 0.41 -0.44 C0262
73 C0218 Pyridoxamine phosphate Pyridoxamine-5'-phosphate Pyridoxamine-5'-phosphate pyridoxal 5'-phosphate salvage pathway 0.64 0.33 -0.3 C0218
74 C0061 Aspartic acid L-Aspartic acid L-Aspartate purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging,
indole-3-acetyl-amino acid biosynthesis,
citrulline-nitric oxide cycle,
asparagine degradation I,
cyanide detoxification II,
asparagine biosynthesis I,
asparagine biosynthesis III (tRNA-dependent),
arginine biosynthesis I,
inosine-5'-phosphate biosynthesis II,
uridine-5'-phosphate biosynthesis,
aspartate biosynthesis,
homoserine biosynthesis,
lysine biosynthesis VI,
aspartate degradation II,
urea cycle,
purine nucleotides de novo biosynthesis II,
NAD biosynthesis I (from aspartate),
IAA degradation IV,
arginine biosynthesis II (acetyl cycle) 		0.59 0.32 -0.29 C0061
75 C0142 Malonic acid - Malonate fatty acid biosynthesis (plant mitochondria) 0.58 0.29 -0.33 C0142