AT3G02240 : root meristem growth factor 7
Query Information
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AGICode AT3G02240
Description Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G02240 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 7 1 0.33 -0.32
2 AT3G46690 UDP-Glycosyltransferase superfamily protein 0.77 0.32 -0.31
3 AT4G22470 protease inhibitor/seed storage/lipid transfer protein
(LTP) family protein		 0.75 0.33 -0.31
4 AT3G04070 NAC domain containing protein 47 NAC domain containing protein 47,
NAC domain containing protein 47		 0.74 0.31 -0.33
5 AT1G30700 FAD-binding Berberine family protein 0.73 0.31 -0.3
6 AT3G08680 Leucine-rich repeat protein kinase family protein -0.71 0.31 -0.33
7 AT2G45210 SAUR-like auxin-responsive protein family 0.71 0.3 -0.32
8 AT2G28120 Major facilitator superfamily protein 0.7 0.33 -0.32
9 AT3G11340 UDP-Glycosyltransferase superfamily protein UDP-dependent glycosyltransferase
76B1		 0.7 0.31 -0.31
10 AT4G33420 Peroxidase superfamily protein 0.69 0.3 -0.31
11 AT2G46380 Protein of unknown function (DUF3133) -0.69 0.33 -0.31
12 AT4G32650 potassium channel in Arabidopsis thaliana 3 ARABIDOPSIS THALIANA K+ RECTIFYING
CHANNEL 1, A. thaliana
low-K+-tolerant 1, potassium
channel in Arabidopsis thaliana 3,
KC1		 0.69 0.31 -0.3
13 AT1G33560 Disease resistance protein (CC-NBS-LRR class) family ACTIVATED DISEASE RESISTANCE 1 0.68 0.31 -0.33
14 AT4G24040 trehalase 1 ATTRE1, trehalase 1 0.68 0.32 -0.33
15 AT4G02380 senescence-associated gene 21 Arabidopsis thaliana late
embryogenensis abundant like 5,
senescence-associated gene 21		 0.67 0.29 -0.31
16 AT2G39660 botrytis-induced kinase1 botrytis-induced kinase1 0.67 0.31 -0.31
17 AT2G02220 phytosulfokin receptor 1 PHYTOSULFOKIN RECEPTOR 1,
phytosulfokin receptor 1		 0.65 0.31 -0.3
18 AT4G30400 RING/U-box superfamily protein -0.65 0.31 -0.32
19 AT2G42360 RING/U-box superfamily protein 0.64 0.32 -0.31
20 AT2G45220 Plant invertase/pectin methylesterase inhibitor superfamily 0.64 0.31 -0.31
21 AT2G42280 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.64 0.34 -0.32
22 AT5G47820 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 FRAGILE FIBER 1 -0.64 0.29 -0.33
23 AT1G70550 Protein of Unknown Function (DUF239) -0.63 0.31 -0.31
24 AT3G29250 NAD(P)-binding Rossmann-fold superfamily protein AtSDR4, short-chain dehydrogenase
reductase 4		 0.63 0.32 -0.31
25 AT1G73260 kunitz trypsin inhibitor 1 ARABIDOPSIS THALIANA KUNITZ
TRYPSIN INHIBITOR 1, kunitz
trypsin inhibitor 1		 0.63 0.3 -0.31
26 AT4G30280 xyloglucan endotransglucosylase/hydrolase 18 XYLOGLUCAN
ENDOTRANSGLUCOSYLASE/HYDROLASE 18,
xyloglucan
endotransglucosylase/hydrolase 18		 0.63 0.33 -0.31
27 AT5G51440 HSP20-like chaperones superfamily protein 0.63 0.32 -0.31
28 AT4G21610 lsd one like 2 lsd one like 2 0.62 0.3 -0.29
29 AT4G13660 pinoresinol reductase 2 ATPRR2, pinoresinol reductase 2 0.62 0.31 -0.31
30 AT1G14460 AAA-type ATPase family protein -0.61 0.31 -0.31
31 AT5G25450 Cytochrome bd ubiquinol oxidase, 14kDa subunit 0.61 0.3 -0.34
32 AT1G01900 subtilase family protein ATSBT1.1, SBTI1.1 -0.61 0.31 -0.31
33 AT4G03010 RNI-like superfamily protein -0.6 0.31 -0.32
34 AT5G46050 peptide transporter 3 ARABIDOPSIS THALIANA PEPTIDE
TRANSPORTER 3, peptide transporter
3		 0.6 0.3 -0.31
35 AT1G17860 Kunitz family trypsin and protease inhibitor protein 0.6 0.31 -0.32
36 AT2G39530 Uncharacterised protein family (UPF0497) 0.6 0.31 -0.3
37 AT2G32100 ovate family protein 16 RABIDOPSIS THALIANA OVATE FAMILY
PROTEIN 16, ovate family protein
16		 -0.59 0.32 -0.34
38 AT1G77640 Integrase-type DNA-binding superfamily protein 0.59 0.31 -0.31
39 AT5G04520 Protein of unknown function DUF455 0.59 0.31 -0.28
40 AT3G61630 cytokinin response factor 6 cytokinin response factor 6 0.59 0.34 -0.33
41 AT5G49520 WRKY DNA-binding protein 48 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 48, WRKY
DNA-binding protein 48		 0.59 0.31 -0.31
42 AT2G35290 unknown protein; Has 39 Blast hits to 39 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.59 0.3 -0.32
43 AT4G35180 LYS/HIS transporter 7 LYS/HIS transporter 7 0.59 0.29 -0.32
44 AT3G22425 imidazoleglycerol-phosphate dehydratase HISN5A,
imidazoleglycerol-phosphate
dehydratase		 -0.59 0.31 -0.29
45 AT3G20710 F-box family protein 0.59 0.31 -0.3
46 AT5G49555 FAD/NAD(P)-binding oxidoreductase family protein -0.57 0.31 -0.31
47 AT1G27850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G40070.1); Has 9215
Blast hits to 5316 proteins in 473 species: Archae - 6;
Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants - 539;
Viruses - 143; Other Eukaryotes - 2652 (source: NCBI
BLink).		 -0.56 0.31 -0.31
48 AT3G57060 binding -0.55 0.33 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
49 C0063 Campesterol - Campesterol brassinosteroid biosynthesis I,
brassinosteroid biosynthesis II,
plant sterol biosynthesis,
brassinosteroid biosynthesis III 		-0.8 0.44 -0.44 C0063
50 C0253 Threonic acid-1,4-lactone D,L-Threonic acid-1,4-lactone - - -0.74 0.45 -0.45
51 C0192 Oxalic acid - Oxalate ascorbate degradation -0.71 0.45 -0.46 C0192
52 C0019 1-O-β-Glucopyranosylsinapic acid 1-O-β-D-Glucopyranosylsinapic acid - phenylpropanoid pathwayl,
lignin biosynthesis 		-0.66 0.46 -0.43
53 C0119 Indole-3-ylmethyl-glucosinolate - indol-3-ylmethyl glucosinolate indole glucosinolate breakdown (active in intact plant cell),
indole glucosinolate breakdown (insect chewing induced),
glucosinolate biosynthesis from tryptophan 		0.63 0.44 -0.45 C0119
54 C0185 MST_3139.9 - - - 0.61 0.43 -0.46
55 C0055 Alanine D,L-Alanine D-Alanine; L-Alanine alanine degradation III,
beta-alanine biosynthesis II,
biotin biosynthesis II,
IAA biosynthesis II,
molybdenum cofactor biosynthesis II (eukaryotes),
phenylalanine degradation III,
alanine biosynthesis III,
IAA biosynthesis I,
alanine biosynthesis II,
tRNA charging,
molybdenum cofactor biosynthesis,
4-aminobutyrate degradation IV,
alanine degradation II (to D-lactate),
indole-3-acetyl-amino acid biosynthesis,
glutamate degradation IV 		0.59 0.32 -0.32 C0055