AT3G10340 : phenylalanine ammonia-lyase 4
Query Information
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AGICode AT3G10340
Description phenylalanine ammonia-lyase 4
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G10340 phenylalanine ammonia-lyase 4 phenylalanine ammonia-lyase 4 1 0.32 -0.31
2 AT5G60020 laccase 17 ATLAC17, laccase 17 0.74 0.29 -0.32
3 AT4G18425 Protein of unknown function (DUF679) 0.72 0.32 -0.31
4 AT5G15630 COBRA-like extracellular glycosyl-phosphatidyl
inositol-anchored protein family		 COBRA-LIKE4, IRREGULAR XYLEM 6 0.71 0.31 -0.32
5 AT1G19970 ER lumen protein retaining receptor family protein 0.71 0.33 -0.28
6 AT4G11290 Peroxidase superfamily protein -0.71 0.32 -0.3
7 AT1G15340 methyl-CPG-binding domain 10 methyl-CPG-binding domain 10 0.7 0.32 -0.32
8 AT1G22640 myb domain protein 3 ARABIDOPSIS THALIANA MYB DOMAIN
PROTEIN 3, myb domain protein 3		 0.7 0.31 -0.32
9 AT4G35300 tonoplast monosaccharide transporter2 tonoplast monosaccharide
transporter2		 0.69 0.31 -0.33
10 AT3G48570 secE/sec61-gamma protein transport protein -0.69 0.34 -0.29
11 AT5G64080 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 AtXYP1, xylogen protein 1 0.69 0.31 -0.31
12 AT5G64890 elicitor peptide 2 precursor elicitor peptide 2 precursor -0.69 0.34 -0.3
13 AT1G73390 Endosomal targeting BRO1-like domain-containing protein 0.68 0.32 -0.3
14 AT1G28240 Protein of unknown function (DUF616) -0.68 0.3 -0.33
15 AT2G28420 Lactoylglutathione lyase / glyoxalase I family protein glyoxylase I 8 0.68 0.31 -0.32
16 AT1G18810 phytochrome kinase substrate-related 0.68 0.32 -0.33
17 AT1G29020 Calcium-binding EF-hand family protein -0.68 0.32 -0.31
18 AT2G28570 unknown protein; Has 13 Blast hits to 13 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.67 0.32 -0.29
19 AT1G14730 Cytochrome b561/ferric reductase transmembrane protein
family		 0.67 0.32 -0.3
20 AT4G12700 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G04280.1); Has 136 Blast hits
to 136 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other
Eukaryotes - 11 (source: NCBI BLink).		 0.66 0.31 -0.3
21 AT2G38080 Laccase/Diphenol oxidase family protein ARABIDOPSIS LACCASE-LIKE
MULTICOPPER OXIDASE 4, IRREGULAR
XYLEM 12, LACCASE 4, LACCASE-LIKE
MULTICOPPER OXIDASE 4		 0.66 0.32 -0.32
22 AT5G13580 ABC-2 type transporter family protein ATP-binding cassette G6 0.66 0.3 -0.32
23 AT1G48140 dolichol-phosphate mannosyltransferase-related dolichol phosphate mannose
synthase 3		 -0.66 0.31 -0.31
24 AT4G19410 Pectinacetylesterase family protein -0.66 0.3 -0.31
25 AT5G17420 Cellulose synthase family protein ATCESA7, CELLULOSE SYNTHASE
CATALYTIC SUBUNIT 7, IRREGULAR
XYLEM 3, MURUS 10		 0.65 0.34 -0.31
26 AT2G40170 Stress induced protein ARABIDOPSIS EARLY
METHIONINE-LABELLED 6, EARLY
METHIONINE-LABELLED 6, LATE
EMBRYOGENESIS ABUNDANT 6		 0.65 0.31 -0.31
27 AT3G28180 Cellulose-synthase-like C4 Cellulose-synthase-like C4,
ATCSLC4, CSLC04,
Cellulose-synthase-like C4,
CELLULOSE-SYNTHASE LIKE C4		 -0.65 0.32 -0.33
28 AT1G63420 Arabidopsis thaliana protein of unknown function (DUF821) 0.64 0.33 -0.32
29 AT5G49580 Chaperone DnaJ-domain superfamily protein -0.64 0.33 -0.33
30 AT5G46450 Disease resistance protein (TIR-NBS-LRR class) family -0.64 0.31 -0.31
31 AT4G34770 SAUR-like auxin-responsive protein family -0.64 0.32 -0.3
32 AT5G19890 Peroxidase superfamily protein -0.64 0.29 -0.33
33 AT2G16990 Major facilitator superfamily protein 0.64 0.32 -0.32
34 AT5G17300 Homeodomain-like superfamily protein REVEILLE 1 0.64 0.33 -0.32
35 AT3G24660 transmembrane kinase-like 1 transmembrane kinase-like 1 0.64 0.3 -0.32
36 AT4G05100 myb domain protein 74 myb domain protein 74, myb domain
protein 74		 0.64 0.3 -0.31
37 AT4G18780 cellulose synthase family protein CELLULOSE SYNTHASE 8, CELLULOSE
SYNTHASE 8, IRREGULAR XYLEM 1,
LEAF WILTING 2		 0.64 0.29 -0.31
38 AT3G48570 secE/sec61-gamma protein transport protein -0.63 0.31 -0.31
39 AT1G06160 octadecanoid-responsive Arabidopsis AP2/ERF 59 octadecanoid-responsive
Arabidopsis AP2/ERF 59		 -0.63 0.33 -0.31
40 AT5G10290 leucine-rich repeat transmembrane protein kinase family
protein		 -0.63 0.32 -0.32
41 AT5G44030 cellulose synthase A4 cellulose synthase A4, IRREGULAR
XYLEM 5, NWS2		 0.63 0.32 -0.32
42 AT4G17070 peptidyl-prolyl cis-trans isomerases -0.63 0.3 -0.34
43 AT2G11140 transposable element gene -0.63 0.31 -0.33
44 AT2G04900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF423
(InterPro:IPR006696); Has 1824 Blast hits to 1824 proteins
in 878 species: Archae - 0; Bacteria - 1498; Metazoa - 118;
Fungi - 14; Plants - 58; Viruses - 0; Other Eukaryotes -
136 (source: NCBI BLink).		 -0.63 0.31 -0.31
45 AT3G22440 FRIGIDA-like protein 0.63 0.31 -0.32
46 AT1G20440 cold-regulated 47 AtCOR47, cold-regulated 47, RD17 0.62 0.31 -0.31
47 AT3G63270 CONTAINS InterPro DOMAIN/s: Putative harbinger
transposase-derived nuclease (InterPro:IPR006912); BEST
Arabidopsis thaliana protein match is: PIF / Ping-Pong
family of plant transposases (TAIR:AT3G55350.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.62 0.31 -0.32
48 AT1G60860 ARF-GAP domain 2 ARF-GAP domain 2 0.62 0.31 -0.31
49 AT5G20050 Protein kinase superfamily protein -0.62 0.31 -0.31
50 AT2G04630 RNA polymerase Rpb6 NRPB6B, NRPE6B -0.61 0.31 -0.31
51 AT2G48060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: shoot, sperm cell;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other
Eukaryotes - 105 (source: NCBI BLink).		 0.61 0.32 -0.33
52 AT5G48480 Lactoylglutathione lyase / glyoxalase I family protein 0.61 0.33 -0.28
53 AT2G22510 hydroxyproline-rich glycoprotein family protein 0.61 0.32 -0.33
54 AT2G29380 highly ABA-induced PP2C gene 3 highly ABA-induced PP2C gene 3 0.61 0.29 -0.34
55 AT3G11600 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.61 0.32 -0.32
56 AT5G56300 gibberellic acid methyltransferase 2 gibberellic acid methyltransferase
2		 -0.61 0.31 -0.35
57 AT3G25710 basic helix-loop-helix 32 ATAIG1, basic helix-loop-helix 32,
TARGET OF MONOPTEROS 5		 0.61 0.3 -0.31
58 AT1G79670 Wall-associated kinase family protein RESISTANCE TO FUSARIUM OXYSPORUM
1, WAKL22		 -0.6 0.33 -0.32
59 AT5G03730 Protein kinase superfamily protein AtCTR1, CONSTITUTIVE TRIPLE
RESPONSE 1, SUGAR-INSENSITIVE 1		 -0.6 0.33 -0.3
60 AT5G13890 Family of unknown function (DUF716) -0.6 0.32 -0.33
61 AT1G01520 Homeodomain-like superfamily protein ALTERED SEED GERMINATION 4 0.6 0.29 -0.35
62 AT3G05320 O-fucosyltransferase family protein -0.6 0.32 -0.31
63 AT5G44310 Late embryogenesis abundant protein (LEA) family protein 0.6 0.3 -0.29
64 AT4G14410 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 basic Helix-Loop-Helix 104 -0.6 0.31 -0.34
65 AT3G06310 Cox19-like CHCH family protein -0.59 0.32 -0.3
66 AT5G24070 Peroxidase superfamily protein -0.59 0.3 -0.31
67 AT4G31150 endonuclease V family protein -0.59 0.31 -0.31
68 AT1G75030 thaumatin-like protein 3 thaumatin-like protein 3,
thaumatin-like protein 3		 0.59 0.31 -0.31
69 AT5G17060 ADP-ribosylation factor B1B ADP-ribosylation factor B1B,
ADP-ribosylation factor B1B		 -0.59 0.33 -0.33
70 AT5G53880 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plasma membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.59 0.3 -0.32
71 AT3G18660 plant glycogenin-like starch initiation protein 1 glucuronic acid substitution of
xylan 1, plant glycogenin-like
starch initiation protein 1		 0.59 0.31 -0.32
72 AT4G29480 Mitochondrial ATP synthase subunit G protein -0.58 0.32 -0.3
73 AT1G75330 ornithine carbamoyltransferase ornithine carbamoyltransferase -0.58 0.31 -0.32
74 AT1G16310 Cation efflux family protein 0.58 0.3 -0.31
75 AT1G25275 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to karrikin; LOCATED IN: endomembrane
system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 18 Blast hits to 18 proteins
in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.58 0.31 -0.32
76 AT5G07150 Leucine-rich repeat protein kinase family protein -0.58 0.32 -0.32
77 AT4G36110 SAUR-like auxin-responsive protein family -0.58 0.31 -0.32
78 AT5G09520 hydroxyproline-rich glycoprotein family protein Pro-Glu-Leu|Ile|Val-Pro-Lys 2 0.58 0.31 -0.31
79 AT1G32100 pinoresinol reductase 1 ATPRR1, pinoresinol reductase 1 0.58 0.3 -0.33
80 AT1G15080 lipid phosphate phosphatase 2 LIPID PHOSPHATE PHOSPHATASE 2,
PHOSPHATIDIC ACID PHOSPHATASE 2,
lipid phosphate phosphatase 2		 0.58 0.32 -0.34
81 AT2G32400 glutamate receptor 5 ATGLR3.7, GLUTAMATE RECEPTOR 3.7,
glutamate receptor 5		 -0.58 0.3 -0.31
82 AT1G48470 glutamine synthetase 1;5 glutamine synthetase 1;5 0.57 0.32 -0.3
83 AT2G18250 4-phosphopantetheine adenylyltransferase 4-phosphopantetheine
adenylyltransferase,
4-phosphopantetheine
adenylyltransferase		 -0.57 0.31 -0.3
84 AT2G34790 FAD-binding Berberine family protein EMBRYO SAC DEVELOPMENT ARREST 28,
MATERNAL EFFECT EMBRYO ARREST 23		 0.57 0.33 -0.34
85 AT2G12400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in
23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi -
0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source:
NCBI BLink).		 0.57 0.3 -0.32
86 AT1G48200 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30
proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.57 0.33 -0.3
87 AT1G30370 alpha/beta-Hydrolases superfamily protein DAD1-like acylhydrolase -0.57 0.31 -0.32
88 AT2G25170 chromatin remodeling factor CHD3 (PICKLE) CHD3, CHR6,
CYTOKININ-HYPERSENSITIVE 2,
GYMNOS, PICKLE, SUPPRESSOR OF SLR
2		 0.56 0.32 -0.32
89 AT3G19270 cytochrome P450, family 707, subfamily A, polypeptide 4 cytochrome P450, family 707,
subfamily A, polypeptide 4		 0.56 0.32 -0.31
90 AT5G54740 seed storage albumin 5 seed storage albumin 5 0.56 0.32 -0.3
91 AT1G35320 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G30160.1); Has 9 Blast hits to
9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.56 0.33 -0.3
92 AT4G21310 Protein of unknown function (DUF1218) -0.56 0.31 -0.33
93 AT5G54690 galacturonosyltransferase 12 galacturonosyltransferase 12,
IRREGULAR XYLEM 8, LGT6		 0.56 0.34 -0.33
94 AT1G06170 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.56 0.3 -0.32
95 AT3G63260 Protein kinase superfamily protein ATMRK1 -0.56 0.32 -0.29
96 AT1G06700 Protein kinase superfamily protein -0.56 0.3 -0.31
97 AT5G16600 myb domain protein 43 myb domain protein 43, myb domain
protein 43		 0.56 0.31 -0.31
98 AT5G06340 nudix hydrolase homolog 27 nudix hydrolase homolog 27, nudix
hydrolase homolog 27		 -0.54 0.3 -0.32
99 AT3G09970 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.54 0.32 -0.32
100 AT2G14030 transposable element gene -0.53 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
101 C0164 MST_1596.8 - - - -0.79 0.44 -0.49
102 C0165 MST_1688.6 - - - -0.69 0.48 -0.45
103 C0221 Quercetin-3-(2''-O-α-rhamnosyl)-O-β-glucosyl-7-O-α-rhamnoside Quercetin-3-(2''-O-α-L-rhamnosyl)-O-β-D-glucosyl-7-O-α-L-rhamnoside - quercetin glucoside biosynthesis (Arabidopsis) -0.66 0.47 -0.45
104 C0023 1,6-Anhydro-β-glucose 1,6-Anhydro-β-D-glucose Levoglucosan - -0.63 0.44 -0.48 C0023
105 C0116 Hydroxylamine - Hydroxylamine - 0.56 0.44 -0.47 C0116