AT3G05410 : -
Query Information
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AGICode AT3G05410
Description Photosystem II reaction center PsbP family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G05410 Photosystem II reaction center PsbP family protein 1 0.32 -0.31
2 AT4G19100 Protein of unknown function (DUF3464) photosynthesis affected mutant 68 0.92 0.31 -0.31
3 AT4G14870 secE/sec61-gamma protein transport protein SECE1 0.91 0.33 -0.32
4 AT4G38160 Mitochondrial transcription termination factor family
protein		 pigment defective 191 0.91 0.28 -0.32
5 AT5G52970 thylakoid lumen 15.0 kDa protein 0.91 0.33 -0.31
6 AT2G47910 chlororespiratory reduction 6 chlororespiratory reduction 6 0.9 0.32 -0.31
7 AT3G26900 shikimate kinase like 1 Arabidopsis thaliana shikimate
kinase-like 1, shikimate
kinase-like 1		 0.9 0.31 -0.3
8 AT3G25805 unknown protein; Has 98 Blast hits to 98 proteins in 45
species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0;
Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.9 0.3 -0.3
9 AT3G19810 Protein of unknown function (DUF177) 0.89 0.32 -0.32
10 AT4G39040 RNA-binding CRS1 / YhbY (CRM) domain protein 0.89 0.32 -0.31
11 AT2G18710 SECY homolog 1 SECY homolog 1 0.89 0.34 -0.31
12 AT2G17033 pentatricopeptide (PPR) repeat-containing protein 0.88 0.3 -0.32
13 AT5G36170 high chlorophyll fluorescent 109 ATPRFB, high chlorophyll
fluorescent 109		 0.88 0.32 -0.32
14 AT3G06950 Pseudouridine synthase family protein 0.88 0.31 -0.31
15 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.88 0.32 -0.33
16 AT1G66820 glycine-rich protein 0.88 0.31 -0.32
17 AT2G33180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57
proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa -
0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
14 (source: NCBI BLink).		 0.88 0.33 -0.32
18 AT5G15210 homeobox protein 30 homeobox protein 30, homeobox
protein 30, ZINC FINGER
HOMEODOMAIN 3, ZINC FINGER
HOMEODOMAIN 8		 0.87 0.32 -0.33
19 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.87 0.32 -0.33
20 AT1G22700 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.3 -0.31
21 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.87 0.32 -0.29
22 AT4G38490 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.87 0.33 -0.31
23 AT3G18680 Amino acid kinase family protein 0.87 0.3 -0.3
24 AT2G17972 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 14 growth stages;
Has 34 Blast hits to 34 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.87 0.32 -0.33
25 AT1G51100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 26
Blast hits to 26 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.87 0.34 -0.33
26 AT5G13140 Pollen Ole e 1 allergen and extensin family protein 0.86 0.33 -0.33
27 AT4G31040 CemA-like proton extrusion protein-related 0.86 0.34 -0.33
28 AT5G02710 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0153 (InterPro:IPR005358); Has 240 Blast hits to 240
proteins in 73 species: Archae - 10; Bacteria - 110;
Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other
Eukaryotes - 95 (source: NCBI BLink).		 0.86 0.31 -0.33
29 AT1G60600 UbiA prenyltransferase family protein ABERRANT CHLOROPLAST DEVELOPMENT 4 0.86 0.34 -0.33
30 AT3G60370 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.86 0.31 -0.3
31 AT2G17240 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G24506.1); Has 2795
Blast hits to 943 proteins in 155 species: Archae - 0;
Bacteria - 388; Metazoa - 809; Fungi - 72; Plants - 153;
Viruses - 54; Other Eukaryotes - 1319 (source: NCBI BLink).		 0.86 0.33 -0.32
32 AT5G15390 tRNA/rRNA methyltransferase (SpoU) family protein 0.86 0.31 -0.34
33 AT5G20040 isopentenyltransferase 9 ARABIDOPSIS THALIANA
ISOPENTENYLTRANSFERASE 9,
isopentenyltransferase 9		 0.85 0.32 -0.31
34 AT3G23760 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: vacuole; EXPRESSED
IN: 20 plant structures; EXPRESSED DURING: 13 growth
stages; BEST Arabidopsis thaliana protein match is:
transferases, transferring glycosyl groups
(TAIR:AT4G14100.1); Has 108 Blast hits to 104 proteins in
19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi -
0; Plants - 90; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).		 0.85 0.32 -0.32
35 AT3G52380 chloroplast RNA-binding protein 33 chloroplast RNA-binding protein
33, PIGMENT DEFECTIVE 322		 0.85 0.32 -0.33
36 AT5G08340 Nucleotidylyl transferase superfamily protein 0.85 0.31 -0.32
37 AT2G40760 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.84 0.31 -0.34
38 AT3G09580 FAD/NAD(P)-binding oxidoreductase family protein 0.84 0.29 -0.32
39 AT4G30580 Phospholipid/glycerol acyltransferase family protein ATS2, EMBRYO DEFECTIVE 1995,
lysophosphatidic acid
acyltransferase 1		 0.84 0.32 -0.31
40 AT4G30825 Tetratricopeptide repeat (TPR)-like superfamily protein 0.84 0.3 -0.31
41 AT2G41720 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 2654 0.83 0.32 -0.3
42 AT3G12210 DNA binding 0.83 0.31 -0.31
43 AT3G20790 NAD(P)-binding Rossmann-fold superfamily protein 0.83 0.31 -0.3
44 AT1G21350 Thioredoxin superfamily protein 0.83 0.32 -0.31
45 AT3G60620 cytidinediphosphate diacylglycerol synthase 5 cytidinediphosphate diacylglycerol
synthase 5		 0.82 0.33 -0.33
46 AT1G33290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.82 0.32 -0.31
47 AT1G60550 enoyl-CoA hydratase/isomerase D DHNS, enoyl-CoA
hydratase/isomerase D		 0.82 0.32 -0.3
48 AT4G37040 methionine aminopeptidase 1D methionine aminopeptidase 1D 0.82 0.31 -0.33
49 AT2G44650 chloroplast chaperonin 10 chloroplast chaperonin 10,
CHLOROPLAST CHAPERONIN 10		 0.82 0.33 -0.31
50 AT3G27050 unknown protein; Has 43 Blast hits to 43 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 0.82 0.3 -0.3
51 AT2G35410 RNA-binding (RRM/RBD/RNP motifs) family protein 0.82 0.31 -0.31
52 AT5G57170 Tautomerase/MIF superfamily protein 0.82 0.3 -0.3
53 AT3G12685 Acid phosphatase/vanadium-dependent haloperoxidase-related
protein		 0.82 0.31 -0.33
54 AT1G14140 Mitochondrial substrate carrier family protein 0.82 0.33 -0.32
55 AT1G17850 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.82 0.32 -0.31
56 AT2G31890 RAP ATRAP, RAP 0.82 0.33 -0.33
57 AT3G48850 phosphate transporter 3;2 phosphate transporter 3;2 -0.78 0.3 -0.31
58 AT2G47800 multidrug resistance-associated protein 4 ATP-binding cassette C4, multidrug
resistance-associated protein 4,
EST3, multidrug
resistance-associated protein 4		 -0.78 0.31 -0.33
59 AT5G51770 Protein kinase superfamily protein -0.73 0.34 -0.31
60 AT5G06860 polygalacturonase inhibiting protein 1 POLYGALACTURONASE INHIBITING
PROTEIN 1, polygalacturonase
inhibiting protein 1		 -0.73 0.32 -0.34
61 AT4G36830 GNS1/SUR4 membrane protein family HOS3-1 -0.72 0.32 -0.3
62 AT3G63500 Protein of unknown function (DUF1423) -0.72 0.33 -0.34
63 AT5G20230 blue-copper-binding protein blue-copper-binding protein, BLUE
COPPER BINDING PROTEIN,
blue-copper-binding protein,
SENESCENCE ASSOCIATED GENE 14		 -0.72 0.3 -0.31
64 AT1G76970 Target of Myb protein 1 -0.71 0.3 -0.33
65 AT3G29310 calmodulin-binding protein-related -0.71 0.32 -0.31
66 AT5G23850 Arabidopsis thaliana protein of unknown function (DUF821) -0.7 0.31 -0.3
67 AT5G13320 Auxin-responsive GH3 family protein GH3-LIKE DEFENSE GENE 1, GRETCHEN
HAGEN 3.12, AVRPPHB SUSCEPTIBLE 3,
HOPW1-1-INTERACTING 3		 -0.7 0.31 -0.32
68 AT1G16540 molybdenum cofactor sulfurase (LOS5) (ABA3) ABA DEFICIENT 3, ALTERED
CHLOROPLAST IMPORT 2, ATABA3, LOW
OSMOTIC STRESS 5, SIRTINOL
RESISTANT 3		 -0.69 0.3 -0.31
69 AT4G11670 Protein of unknown function (DUF810) -0.69 0.33 -0.34
70 AT3G15990 sulfate transporter 3;4 sulfate transporter 3;4 -0.69 0.3 -0.31
71 AT4G23190 cysteine-rich RLK (RECEPTOR-like protein kinase) 11 RECEPTOR LIKE PROTEIN KINASE 3,
cysteine-rich RLK (RECEPTOR-like
protein kinase) 11		 -0.69 0.32 -0.31
72 AT4G32940 gamma vacuolar processing enzyme gamma vacuolar processing enzyme,
GAMMAVPE		 -0.69 0.34 -0.33
73 AT3G27210 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
plasma membrane; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G40860.1); Has 133 Blast hits to 98 proteins in 25
species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7;
Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source:
NCBI BLink).		 -0.68 0.36 -0.31
74 AT2G43290 Calcium-binding EF-hand family protein multicopy suppressors of snf4
deficiency in yeast 3		 -0.67 0.35 -0.33
75 AT1G18890 calcium-dependent protein kinase 1 calcium-dependent protein kinase
1, AtCPK10, calcium-dependent
protein kinase 1, CPK10		 -0.66 0.32 -0.33
76 AT5G01540 lectin receptor kinase a4.1 lectin receptor kinase a4.1 -0.66 0.33 -0.32
77 AT5G12270 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.65 0.31 -0.34
78 AT4G04860 DERLIN-2.2 DERLIN-2.2 -0.64 0.3 -0.32
79 AT5G49900 Beta-glucosidase, GBA2 type family protein -0.64 0.29 -0.33
80 AT1G26380 FAD-binding Berberine family protein -0.64 0.34 -0.32
81 AT3G04060 NAC domain containing protein 46 NAC domain containing protein 46,
NAC domain containing protein 46		 -0.64 0.33 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
82 C0204 Phosphatidylglycerol-34:2 - Phosphatidylglycerol-34:2 cardiolipin biosynthesis II,
linoleate biosynthesis I,
glycerophosphodiester degradation,
glutathione redox reactions I 		0.84 0.46 -0.45 C0204