AT3G09150 : ARABIDOPSIS ELONGATED HYPOCOTYL 2
Query Information
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AGICode AT3G09150
Description phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G09150 phytochromobilin:ferredoxin oxidoreductase, chloroplast /
phytochromobilin synthase (HY2)		 ARABIDOPSIS ELONGATED HYPOCOTYL 2,
GENOMES UNCOUPLED 3, ELONGATED
HYPOCOTYL 2		 1 0.32 -0.3
2 AT2G39080 NAD(P)-binding Rossmann-fold superfamily protein EMBRYO DEFECTIVE 2799 0.88 0.3 -0.31
3 AT4G11980 nudix hydrolase homolog 14 ARABIDOPSIS THALIANA NUDIX
HYDROLASE HOMOLOG 14, nudix
hydrolase homolog 14, nudix
hydrolase homolog 14		 0.86 0.3 -0.3
4 AT5G16660 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast, membrane,
chloroplast envelope; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G02900.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.85 0.32 -0.31
5 AT2G26540 uroporphyrinogen-III synthase family protein DOMAIN OF UNKNOWN FUNCTION 724 3,
ARABIDOPSIS THALIANA
UROPORPHYRINOGEN III SYNTHASE,
DOMAIN OF UNKNOWN FUNCTION 724 3,
HEMD, UROPORPHYRINOGEN III
SYNTHASE		 0.83 0.29 -0.31
6 AT5G45390 CLP protease P4 CLP protease P4, NUCLEAR-ENCODED
CLP PROTEASE P4		 0.83 0.35 -0.3
7 AT2G39080 NAD(P)-binding Rossmann-fold superfamily protein EMBRYO DEFECTIVE 2799 0.82 0.31 -0.31
8 AT4G33460 ABC transporter family protein ATP-binding cassette I10, ATNAP13,
embryo defective 2751		 0.8 0.3 -0.31
9 AT4G33350 Tic22-like family protein translocon at the inner envelope
membrane of chloroplasts 22-IV,
translocon at the inner envelope
membrane of chloroplasts 22-IV		 0.79 0.33 -0.32
10 AT2G43750 O-acetylserine (thiol) lyase B ARABIDOPSIS CYSTEINE SYNTHASE 1,
ARABIDOPSIS THALIANA CYSTEIN
SYNTHASE-B, CHLOROPLAST
O-ACETYLSERINE SULFHYDRYLASE 1,
O-acetylserine (thiol) lyase B		 0.79 0.31 -0.32
11 AT5G41480 Folylpolyglutamate synthetase family protein A. THALIANA DHFS-FPGS HOMOLOG A,
DHFS-FPGS HOMOLOG A, EMBRYO
DEFECTIVE 9, GLOBULAR ARREST1		 0.79 0.31 -0.31
12 AT2G05830 NagB/RpiA/CoA transferase-like superfamily protein 0.79 0.31 -0.33
13 AT2G20270 Thioredoxin superfamily protein 0.78 0.31 -0.29
14 AT2G26670 Plant haem oxygenase (decyclizing) family protein ARABIDOPSIS THALIANA HEME
OXYGENASE 1, GENOMES UNCOUPLED 2,
HEME OXYGENASE 1, HEME OXYGENASE
1, HEME OXYGENASE 6, REVERSAL OF
THE DET PHENOTYPE 4		 0.77 0.33 -0.3
15 AT4G21860 methionine sulfoxide reductase B 2 methionine sulfoxide reductase B 2 0.77 0.32 -0.32
16 AT4G30310 FGGY family of carbohydrate kinase 0.76 0.34 -0.31
17 AT1G12410 CLP protease proteolytic subunit 2 CLP protease proteolytic subunit
2, CLPR2, EMBRYO DEFECTIVE 3146,
NUCLEAR-ENCODED CLP PROTEASE P2		 0.76 0.34 -0.33
18 AT3G54860 Sec1/munc18-like (SM) proteins superfamily ATVPS33, VACUOLAR PROTEIN SORTING
33		 0.75 0.3 -0.29
19 AT3G60810 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1499 (InterPro:IPR010865); Has 444
Blast hits to 444 proteins in 143 species: Archae - 0;
Bacteria - 268; Metazoa - 0; Fungi - 0; Plants - 51;
Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).		 0.75 0.29 -0.31
20 AT1G11750 CLP protease proteolytic subunit 6 CLP protease proteolytic subunit
6, NUCLEAR-ENCODED CLPP 1, NCLPP6		 0.75 0.33 -0.3
21 AT4G14910 HISTIDINE BIOSYNTHESIS 5B HISTIDINE BIOSYNTHESIS 5B 0.74 0.32 -0.32
22 AT3G44620 protein tyrosine phosphatases;protein tyrosine phosphatases 0.74 0.32 -0.31
23 AT4G36910 Cystathionine beta-synthase (CBS) family protein CBS domain containing protein 1,
CYSTATHIONE [BETA]-SYNTHASE
DOMAIN-CONTAINING PROTEIN 2, LOSS
OF THE TIMING OF ET AND JA
BIOSYNTHESIS 2		 0.74 0.32 -0.31
24 AT3G01850 Aldolase-type TIM barrel family protein 0.74 0.31 -0.29
25 AT5G06580 FAD-linked oxidases family protein 0.73 0.32 -0.3
26 AT5G13740 zinc induced facilitator 1 zinc induced facilitator 1 0.73 0.32 -0.31
27 AT1G02560 nuclear encoded CLP protease 5 nuclear encoded CLP protease 5,
NUCLEAR-ENCODED CLPP 1, NUCLEAR
CLPP 5		 0.73 0.31 -0.33
28 AT1G73990 signal peptide peptidase signal peptide peptidase, SPPA1 0.73 0.31 -0.29
29 AT1G27385 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF493 (InterPro:IPR007454);
Has 76 Blast hits to 76 proteins in 23 species: Archae - 0;
Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 69; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 0.73 0.33 -0.34
30 AT1G08490 chloroplastic NIFS-like cysteine desulfurase ATCPNIFS, ATNFS2, ATSUFS,
chloroplastic NIFS-like cysteine
desulfurase, SUFS		 0.72 0.31 -0.33
31 AT5G03420 5'-AMP-activated protein kinase-related 0.72 0.31 -0.32
32 AT2G19940 oxidoreductases, acting on the aldehyde or oxo group of
donors, NAD or NADP as acceptor;copper ion binding		 0.72 0.32 -0.31
33 AT3G56460 GroES-like zinc-binding alcohol dehydrogenase family
protein		 0.72 0.31 -0.29
34 AT4G32320 ascorbate peroxidase 6 ascorbate peroxidase 6 0.72 0.33 -0.31
35 AT1G65260 plastid transcriptionally active 4 plastid transcriptionally active
4, VESICLE-INDUCING PROTEIN IN
PLASTIDS 1		 0.72 0.32 -0.32
36 AT2G46580 Pyridoxamine 5'-phosphate oxidase family protein 0.72 0.3 -0.32
37 AT5G40160 Ankyrin repeat family protein EMBRYO DEFECTIVE 139, embryo
defective 506		 0.72 0.33 -0.32
38 AT1G14570 UBX domain-containing protein 0.71 0.31 -0.34
39 AT2G35490 Plastid-lipid associated protein PAP / fibrillin family
protein		 0.71 0.32 -0.32
40 AT5G60600 4-hydroxy-3-methylbut-2-enyl diphosphate synthase CHLOROPLAST BIOGENESIS 4,
CONSTITUTIVE SUBTILISIN 3, GCPE,
4-hydroxy-3-methylbut-2-enyl
diphosphate synthase, ISPG		 0.71 0.29 -0.33
41 AT4G25700 beta-hydroxylase 1 B1, BETA CAROTENOID HYDROXYLASE 1,
beta-hydroxylase 1, chy1		 0.71 0.32 -0.3
42 AT1G09130 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 0.7 0.32 -0.33
43 AT2G25830 YebC-related 0.7 0.32 -0.3
44 AT2G32040 Major facilitator superfamily protein 0.69 0.31 -0.33
45 AT1G43130 like COV 2 like COV 2 0.69 0.31 -0.31
46 AT1G78140 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.69 0.31 -0.31
47 AT4G29670 atypical CYS HIS rich thioredoxin 2 atypical CYS HIS rich thioredoxin
2		 0.69 0.31 -0.3
48 AT1G52510 alpha/beta-Hydrolases superfamily protein 0.69 0.3 -0.3
49 AT3G05350 Metallopeptidase M24 family protein 0.69 0.34 -0.29
50 AT3G06580 Mevalonate/galactokinase family protein GALACTOSE KINASE 1, GALK 0.69 0.31 -0.31
51 AT1G06820 carotenoid isomerase CAROTENOID AND CHLOROPLAST
REGULATION 2, carotenoid isomerase		 0.69 0.32 -0.33
52 AT5G17530 phosphoglucosamine mutase family protein 0.69 0.34 -0.31
53 AT1G25290 RHOMBOID-like protein 10 RHOMBOID-like protein 10,
RHOMBOID-like protein 10		 0.68 0.3 -0.32
54 AT5G16290 VALINE-TOLERANT 1 VALINE-TOLERANT 1 0.68 0.31 -0.32
55 AT5G50860 Protein kinase superfamily protein 0.68 0.34 -0.33
56 AT5G06130 chaperone protein dnaJ-related 0.68 0.32 -0.33
57 AT4G01900 GLNB1 homolog GLNB1 homolog, PII 0.68 0.3 -0.31
58 AT1G76080 chloroplastic drought-induced stress protein of 32 kD ARABIDOPSIS THALIANA CHLOROPLASTIC
DROUGHT-INDUCED STRESS PROTEIN OF
32 KD, chloroplastic
drought-induced stress protein of
32 kD		 0.68 0.33 -0.32
59 AT1G54520 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1517 (InterPro:IPR010903);
Has 276 Blast hits to 275 proteins in 83 species: Archae -
0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113;
Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).		 0.68 0.3 -0.3
60 AT5G57850 D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily protein		 0.68 0.31 -0.3
61 AT5G21060 Glyceraldehyde-3-phosphate dehydrogenase-like family
protein		 0.67 0.32 -0.31
62 AT2G37920 copper ion transmembrane transporters embryo defective 1513 0.67 0.32 -0.31
63 AT1G24490 OxaA/YidC-like membrane insertion protein ALBINA 4, ARABIDOPSIS THALIANA
ENVELOPE MEMBRANE INTEGRASE		 0.67 0.32 -0.3
64 AT5G16810 Protein kinase superfamily protein 0.67 0.33 -0.31
65 AT4G17040 CLP protease R subunit 4 CLP protease R subunit 4, happy on
norflurazon 5		 0.67 0.32 -0.32
66 AT1G54920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.67 0.31 -0.32
67 AT2G36250 Tubulin/FtsZ family protein ATFTSZ2-1, FTSZ2-1 0.67 0.32 -0.3
68 AT5G27330 Prefoldin chaperone subunit family protein -0.66 0.34 -0.3
69 AT5G59610 Chaperone DnaJ-domain superfamily protein 0.66 0.32 -0.31
70 AT5G04260 WCRKC thioredoxin 2 WCRKC thioredoxin 2 0.66 0.32 -0.31
71 AT1G23210 glycosyl hydrolase 9B6 glycosyl hydrolase 9B6, glycosyl
hydrolase 9B6		 -0.66 0.32 -0.31
72 AT2G01220 Nucleotidylyl transferase superfamily protein 0.65 0.31 -0.3
73 AT1G02475 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.65 0.32 -0.31
74 AT4G16770 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.65 0.33 -0.3
75 AT1G26090 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.65 0.33 -0.31
76 AT1G32400 tobamovirus multiplication 2A tobamovirus multiplication 2A 0.65 0.29 -0.31
77 AT1G75340 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.65 0.34 -0.31
78 AT5G50110 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.65 0.32 -0.31
79 AT3G62270 HCO3- transporter family -0.65 0.3 -0.29
80 AT2G15290 translocon at inner membrane of chloroplasts 21 TRANSLOCON AT INNER MEMBRANE OF
CHLOROPLASTS 21, CHLOROPLAST
IMPORT APPARATUS 5, PERMEASE IN
CHLOROPLASTS 1, translocon at
inner membrane of chloroplasts 21		 0.65 0.32 -0.31
81 AT3G48410 alpha/beta-Hydrolases superfamily protein -0.65 0.32 -0.32
82 AT5G05930 guanylyl cyclase 1 ARABIDOPSIS GUANYLYL CYCLASE 1,
guanylyl cyclase 1		 0.65 0.3 -0.3
83 AT3G61160 Protein kinase superfamily protein -0.64 0.31 -0.33
84 AT3G45960 expansin-like A3 expansin-like A3, ATEXPL3, ATHEXP
BETA 2.3, expansin-like A3, EXPL3		 -0.64 0.33 -0.31
85 AT1G21090 Cupredoxin superfamily protein -0.64 0.3 -0.32
86 AT1G34750 Protein phosphatase 2C family protein -0.63 0.3 -0.3
87 AT3G20840 Integrase-type DNA-binding superfamily protein PLETHORA 1 -0.62 0.31 -0.32
88 AT1G73590 Auxin efflux carrier family protein ARABIDOPSIS THALIANA PIN-FORMED 1,
PIN-FORMED 1		 -0.62 0.3 -0.31
89 AT2G16570 GLN phosphoribosyl pyrophosphate amidotransferase 1 GLN phosphoribosyl pyrophosphate
amidotransferase 1, ATASE, GLN
phosphoribosyl pyrophosphate
amidotransferase 1		 -0.62 0.28 -0.31
90 AT5G13680 IKI3 family protein ABA-OVERLY SENSITIVE 1, AtELP1,
ELONGATA 2		 -0.62 0.32 -0.3
91 AT1G53270 ABC-2 type transporter family protein ATP-binding cassette G10 -0.61 0.3 -0.31
92 AT1G76930 extensin 4 EXTENSIN 1, extensin 4, extensin
1, extensin 4, OBP3-RESPONSIVE
GENE 5		 -0.61 0.29 -0.3
93 AT1G14780 MAC/Perforin domain-containing protein -0.61 0.3 -0.32
94 AT2G32280 Protein of unknown function (DUF1218) -0.61 0.32 -0.32
95 AT4G08150 KNOTTED-like from Arabidopsis thaliana BREVIPEDICELLUS, BREVIPEDICELLUS
1, KNOTTED-like from Arabidopsis
thaliana		 -0.6 0.3 -0.33
96 AT1G69180 Plant-specific transcription factor YABBY family protein CRABS CLAW -0.6 0.31 -0.32
97 AT1G14350 Duplicated homeodomain-like superfamily protein myb domain protein 124, FOUR LIPS,
MYB124		 -0.6 0.31 -0.32
98 AT2G39370 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits
to 178 proteins in 53 species: Archae - 0; Bacteria - 58;
Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other
Eukaryotes - 14 (source: NCBI BLink).		 MEMBRANE-ASSOCIATED KINASE
REGULATOR 4		 -0.6 0.33 -0.31
99 AT4G00820 IQ-domain 17 IQ-domain 17 -0.59 0.31 -0.31
100 AT3G26750 CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme
E2C-binding protein (InterPro:IPR019193); Has 26 Blast hits
to 25 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.31 -0.31
101 AT3G02940 myb domain protein 107 myb domain protein 107, myb domain
protein 107		 -0.58 0.31 -0.34
102 AT4G17350 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 -0.58 0.31 -0.34
103 AT5G40780 lysine histidine transporter 1 lysine histidine transporter 1 -0.58 0.3 -0.31
104 AT1G11420 DOMAIN OF UNKNOWN FUNCTION 724 2 DOMAIN OF UNKNOWN FUNCTION 724 2,
DOMAIN OF UNKNOWN FUNCTION 724 2		 -0.57 0.3 -0.3
105 AT2G47680 zinc finger (CCCH type) helicase family protein -0.57 0.33 -0.3
106 AT3G15540 indole-3-acetic acid inducible 19 indole-3-acetic acid inducible 19,
MASSUGU 2		 -0.57 0.3 -0.3
107 AT4G33100 CONTAINS InterPro DOMAIN/s: Mitochondrial
distribution/morphology family 35/apoptosis
(InterPro:IPR007918); Has 214 Blast hits to 214 proteins in
102 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi
- 69; Plants - 29; Viruses - 0; Other Eukaryotes - 6
(source: NCBI BLink).		 -0.56 0.32 -0.31
108 AT4G32870 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.56 0.34 -0.32
109 AT5G54020 Cysteine/Histidine-rich C1 domain family protein -0.56 0.32 -0.31
110 AT2G14960 Auxin-responsive GH3 family protein GH3.1 -0.55 0.31 -0.31
111 AT2G19580 tetraspanin2 tetraspanin2 -0.55 0.31 -0.32
112 AT1G79320 metacaspase 6 metacaspase 6, metacaspase 2c,
metacaspase 6, metacaspase 2c		 -0.55 0.32 -0.32
113 AT4G23496 SPIRAL1-like5 SPIRAL1-like5 -0.55 0.29 -0.3
114 AT2G18500 ovate family protein 7 ARABIDOPSIS THALIANA OVATE FAMILY
PROTEIN 7, ovate family protein 7		 -0.54 0.31 -0.29
115 AT3G25640 Protein of unknown function, DUF617 -0.54 0.33 -0.31
116 AT2G23060 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.54 0.31 -0.29
117 AT5G51930 Glucose-methanol-choline (GMC) oxidoreductase family
protein		 -0.54 0.3 -0.3
118 AT3G55550 Concanavalin A-like lectin protein kinase family protein -0.53 0.28 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
119 C0178 MST_2446.7 - - - 0.72 0.42 -0.46
120 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis 0.71 0.45 -0.45