AT3G07610 : increase in bonsai methylation 1
Query Information
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AGICode AT3G07610
Description Transcription factor jumonji (jmjC) domain-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G07610 Transcription factor jumonji (jmjC) domain-containing
protein		 increase in bonsai methylation 1 1 0.33 -0.31
2 AT4G00780 TRAF-like family protein -0.75 0.3 -0.31
3 AT5G14570 high affinity nitrate transporter 2.7 high affinity nitrate transporter
2.7, high affinity nitrate
transporter 2.7		 0.69 0.31 -0.32
4 AT3G61210 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.69 0.32 -0.32
5 AT1G63900 E3 Ubiquitin ligase family protein DIAP1-like protein 1 0.69 0.33 -0.29
6 AT5G01600 ferretin 1 ARABIDOPSIS THALIANA FERRETIN 1,
ferretin 1		 0.68 0.3 -0.3
7 AT1G12790 CONTAINS InterPro DOMAIN/s: RuvA domain 2-like
(InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.67 0.34 -0.31
8 AT1G23130 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.65 0.31 -0.31
9 AT5G03200 RING/U-box superfamily protein 0.64 0.3 -0.32
10 AT2G41650 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 3 Blast hits to 3 proteins in
1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.64 0.3 -0.33
11 AT1G11390 Protein kinase superfamily protein 0.64 0.32 -0.33
12 AT1G54920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.64 0.3 -0.31
13 AT1G77080 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 27, FLOWERING LOCUS
M, MADS AFFECTING FLOWERING 1		 0.64 0.31 -0.32
14 AT5G57140 purple acid phosphatase 28 PURPLE ACID PHOSPHATASE 28, purple
acid phosphatase 28		 -0.64 0.31 -0.32
15 AT5G28290 NIMA-related kinase 3 NIMA-related kinase 3,
NIMA-related kinase 3		 0.63 0.31 -0.3
16 AT4G21090 MITOCHONDRIAL FERREDOXIN 2 ARABIDOPSIS MITOCHONDRIAL
FERREDOXIN 2, MITOCHONDRIAL
FERREDOXIN 2		 -0.63 0.31 -0.33
17 AT1G08980 amidase 1 amidase 1, AMIDASE-LIKE PROTEIN 1,
ARABIDOPSIS THALIANA TRANSLOCON AT
THE OUTER MEMBRANE OF CHLOROPLASTS
64-I, TRANSLOCON AT THE OUTER
MEMBRANE OF CHLOROPLASTS 64-I		 -0.63 0.3 -0.3
18 AT4G23730 Galactose mutarotase-like superfamily protein -0.63 0.32 -0.31
19 AT1G43840 transposable element gene 0.63 0.31 -0.33
20 AT4G35760 NAD(P)H dehydrogenase (quinone)s -0.63 0.3 -0.32
21 AT4G21100 damaged DNA binding protein 1B damaged DNA binding protein 1B -0.62 0.3 -0.33
22 AT5G28490 Protein of unknown function (DUF640) LIGHT-DEPENDENT SHORT HYPOCOTYLS
1, ORGAN BOUNDARY 2		 0.62 0.32 -0.32
23 AT5G52480 RNI-like superfamily protein 0.62 0.31 -0.3
24 AT1G67240 transposable element gene 0.61 0.32 -0.32
25 AT5G18340 ARM repeat superfamily protein -0.6 0.32 -0.31
26 AT1G60010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in
18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.6 0.32 -0.29
27 AT1G78550 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.6 0.31 -0.33
28 AT3G03580 Tetratricopeptide repeat (TPR)-like superfamily protein 0.6 0.32 -0.3
29 AT5G52640 heat shock protein 90.1 ATHS83, HEAT SHOCK PROTEIN 90-1,
heat shock protein 90.1, HEAT
SHOCK PROTEIN 81-1, HSP81.1, HEAT
SHOCK PROTEIN 83, heat shock
protein 90.1		 0.6 0.3 -0.31
30 AT5G67370 Protein of unknown function (DUF1230) -0.6 0.31 -0.33
31 AT1G23020 ferric reduction oxidase 3 FERRIC REDUCTION OXIDASE 3, ferric
reduction oxidase 3		 -0.6 0.32 -0.32
32 AT5G28760 transposable element gene -0.6 0.33 -0.29
33 AT1G74870 RING/U-box superfamily protein 0.59 0.3 -0.31
34 AT3G18295 Protein of unknown function (DUF1639) -0.59 0.32 -0.33
35 AT3G47000 Glycosyl hydrolase family protein -0.59 0.31 -0.32
36 AT2G39090 tetratricopeptide repeat (TPR)-containing protein anaphase-promoting complex 7,
AtAPC7		 -0.59 0.31 -0.32
37 AT5G46750 ARF-GAP domain 9 ARF-GAP domain 9 -0.58 0.31 -0.28
38 AT1G63470 AT hook motif DNA-binding family protein 0.58 0.31 -0.29
39 AT5G61920 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures;
EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G67170.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.58 0.33 -0.31
40 AT4G31050 Biotin/lipoate A/B protein ligase family -0.57 0.32 -0.31
41 AT3G57050 cystathionine beta-lyase cystathionine beta-lyase -0.57 0.32 -0.31
42 ATMG00740 hypothetical protein ORF100A -0.57 0.31 -0.33
43 AT3G49160 pyruvate kinase family protein 0.57 0.31 -0.34
44 AT5G10870 chorismate mutase 2 chorismate mutase 2, chorismate
mutase 2		 -0.56 0.34 -0.33
45 AT1G10770 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.56 0.33 -0.31
46 AT4G19670 RING/U-box superfamily protein -0.56 0.34 -0.33
47 AT1G19980 cytomatrix protein-related -0.56 0.32 -0.32
48 AT5G58780 Undecaprenyl pyrophosphate synthetase family protein 0.56 0.3 -0.31
49 AT2G42940 Predicted AT-hook DNA-binding family protein 0.56 0.35 -0.31
50 AT1G27595 CONTAINS InterPro DOMAIN/s: Symplekin tight junction
protein C-terminal (InterPro:IPR022075); BEST Arabidopsis
thaliana protein match is: HEAT repeat-containing protein
(TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in
111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi
- 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345
(source: NCBI BLink).		 0.56 0.32 -0.32
51 AT3G15353 metallothionein 3 ATMT3, metallothionein 3 -0.56 0.32 -0.33
52 AT3G42640 H(+)-ATPase 8 H(+)-ATPase 8, H(+)-ATPase 8 0.55 0.32 -0.33
53 AT5G07640 RING/U-box superfamily protein 0.55 0.32 -0.31
54 AT1G47400 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G47395.1); Has 11 Blast hits
to 11 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.55 0.3 -0.31
55 AT2G42040 CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has
219 Blast hits to 219 proteins in 19 species: Archae - 0;
Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 215; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 -0.55 0.3 -0.31
56 AT5G56610 Phosphotyrosine protein phosphatases superfamily protein -0.55 0.31 -0.31
57 AT4G20250 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.55 0.31 -0.3
58 AT1G35470 SPla/RYanodine receptor (SPRY) domain-containing protein -0.55 0.31 -0.31
59 AT2G05920 Subtilase family protein 0.55 0.3 -0.33
60 AT3G30710 transposable element gene -0.55 0.31 -0.32
61 AT4G39130 Dehydrin family protein 0.55 0.32 -0.3
62 AT3G32917 transposable element gene -0.54 0.32 -0.31
63 AT3G42980 transposable element gene 0.54 0.31 -0.32
64 AT2G22000 elicitor peptide 6 precursor elicitor peptide 6 precursor -0.54 0.32 -0.32
65 AT2G30070 potassium transporter 1 potassium transporter 1, ATKT1P,
ATKUP1, potassium transporter 1,
POTASSIUM UPTAKE TRANSPORTER 1		 -0.53 0.3 -0.34
66 AT4G39490 cytochrome P450, family 96, subfamily A, polypeptide 10 cytochrome P450, family 96,
subfamily A, polypeptide 10		 -0.53 0.32 -0.3
67 AT2G16380 Sec14p-like phosphatidylinositol transfer family protein -0.53 0.32 -0.3
68 AT5G55680 glycine-rich protein 0.53 0.34 -0.34
69 AT2G07520 transposable element gene 0.53 0.32 -0.33
70 AT3G06080 Plant protein of unknown function (DUF828) TRICHOME BIREFRINGENCE-LIKE 10 -0.52 0.32 -0.34
71 AT2G13680 callose synthase 5 ARABIDOPSIS THALIANA GLUCAN
SYNTHASE-LIKE 2, callose synthase
5, GLUCAN SYNTHASE-LIKE 2		 -0.52 0.33 -0.31
72 AT5G18710 Domain of unknown function (DUF3444) -0.52 0.3 -0.31
73 AT2G01890 purple acid phosphatase 8 PURPLE ACID PHOSPHATASE 8, purple
acid phosphatase 8		 0.52 0.3 -0.32
74 AT2G24830 zinc finger (CCCH-type) family protein / D111/G-patch
domain-containing protein		 -0.52 0.3 -0.31
75 AT5G62320 myb domain protein 99 myb domain protein 99, ATMYBCU15,
myb domain protein 99		 0.51 0.33 -0.3
76 AT5G64880 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.51 0.3 -0.31
77 AT3G28150 TRICHOME BIREFRINGENCE-LIKE 22 ALTERED XYLOGLUCAN 4-LIKE,
TRICHOME BIREFRINGENCE-LIKE 22		 0.51 0.3 -0.31
78 AT5G06820 STRUBBELIG-receptor family 2 STRUBBELIG-receptor family 2 -0.51 0.3 -0.3
79 AT5G07230 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.51 0.33 -0.32
80 AT2G14170 aldehyde dehydrogenase 6B2 aldehyde dehydrogenase 6B2 -0.51 0.3 -0.3
81 AT1G30460 cleavage and polyadenylation specificity factor 30 ARABIDOPSIS THALIANA CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR
30, cleavage and polyadenylation
specificity factor 30		 0.51 0.32 -0.32
82 AT3G49920 voltage dependent anion channel 5 ARABIDOPSIS THALIANA VOLTAGE
DEPENDENT ANION CHANNEL 5, voltage
dependent anion channel 5		 -0.51 0.33 -0.31
83 AT4G11770 Galactose oxidase/kelch repeat superfamily protein -0.51 0.31 -0.3
84 AT5G25860 F-box/RNI-like superfamily protein -0.51 0.32 -0.33
85 AT1G62350 Pentatricopeptide repeat (PPR) superfamily protein 0.5 0.32 -0.3
86 AT4G13460 SU(VAR)3-9 homolog 9 SETDOMAIN GROUP 22, SET22,
SU(VAR)3-9 homolog 9		 0.49 0.3 -0.32
87 AT5G18750 DNAJ heat shock N-terminal domain-containing protein 0.49 0.31 -0.33
88 AT5G25060 RNA recognition motif (RRM)-containing protein 0.49 0.32 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
89 C0012 n-Eicosanoic acid - Arachidate fatty acid activation,
fatty acid ω-oxidation,
sporopollenin precursor biosynthesis,
acyl-ACP thioesterase pathway,
ceramide degradation,
fatty acid α-oxidation,
fatty acid ω-oxidation,
phospholipases,
triacylglycerol degradation 		0.79 0.43 -0.41 C0012
90 C0001 α-Linolenic acid - (9,12,15)-Linolenate traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
poly-hydroxy fatty acids biosynthesis,
jasmonic acid biosynthesis 		0.77 0.48 -0.47 C0001
91 C0213 PR_MST_2410.2 - - - 0.75 0.43 -0.42
92 C0178 MST_2446.7 - - - -0.74 0.44 -0.47
93 C0086 Disinapylspermidine - - - 0.74 0.44 -0.4
94 C0144 Maltose D-Maltose α-Maltose starch degradation II 0.72 0.41 -0.46 C0144
95 C0161 MST_1566.3 - - - -0.71 0.44 -0.48
96 C0173 MST_2301.7 - - - 0.7 0.45 -0.46
97 C0159 MST_1505.6 - - - -0.7 0.45 -0.44
98 C0162 MST_1588.3 - - - -0.7 0.47 -0.44
99 C0163 MST_1589.2 - - - -0.69 0.45 -0.46
100 C0214 PR_MST_2412.1 - - - 0.68 0.47 -0.45
101 C0160 MST_1509.5 - - - -0.66 0.49 -0.45
102 C0058 Arginine D,L-Arginine L-Arginine arginine degradation VI (arginase 2 pathway),
arginine degradation I (arginase pathway),
arginine biosynthesis I,
putrescine biosynthesis II,
nitric oxide biosynthesis I (in plants),
citrulline biosynthesis,
putrescine biosynthesis I,
tRNA charging,
arginine biosynthesis II (acetyl cycle),
citrulline-nitric oxide cycle,
urea cycle,
L-Ndelta-acetylornithine biosynthesis 		-0.63 0.32 -0.31 C0058
103 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		-0.6 0.46 -0.47 C0088
104 C0069 Citrulline - Citrulline citrulline-nitric oxide cycle,
citrulline biosynthesis,
nitric oxide biosynthesis I (in plants),
urea cycle,
citrulline degradation,
arginine biosynthesis II (acetyl cycle),
arginine biosynthesis I 		-0.55 0.33 -0.31 C0069
105 C0060 Asparagine D,L-Asparagine L-Asparagine asparagine degradation I,
asparagine biosynthesis III (tRNA-dependent),
asparagine biosynthesis I,
tRNA charging,
cyanide detoxification II 		-0.52 0.32 -0.3 C0060