AT3G01120 : AtCGS1
Query Information
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AGICode AT3G01120
Description Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G01120 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 AtCGS1, A. thaliana cystathionine
gamma-synthetase 1, CYSTATHIONINE
GAMMA-SYNTHASE, CYSTATHIONINE
GAMMA-SYNTHASE 1, METHIONINE
OVERACCUMULATION 1		 1 0.3 -0.32
2 AT3G17390 S-adenosylmethionine synthetase family protein METHIONINE ADENOSYLTRANSFERASE 4,
METHIONINE OVER-ACCUMULATOR 3,
S-ADENOSYLMETHIONINE SYNTHETASE 3		 0.84 0.3 -0.31
3 AT3G46820 type one serine/threonine protein phosphatase 5 type one serine/threonine protein
phosphatase 5		 0.81 0.3 -0.32
4 AT1G76990 ACT domain repeat 3 ACT domain repeat 3 0.8 0.32 -0.3
5 AT2G18910 hydroxyproline-rich glycoprotein family protein 0.79 0.3 -0.31
6 AT4G17870 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 PYRABACTIN RESISTANCE 1,
regulatory component of ABA
receptor 11		 0.79 0.31 -0.3
7 AT5G52060 BCL-2-associated athanogene 1 BCL-2-associated athanogene 1,
BCL-2-associated athanogene 1		 0.78 0.31 -0.31
8 AT2G30010 TRICHOME BIREFRINGENCE-LIKE 45 TRICHOME BIREFRINGENCE-LIKE 45 0.78 0.3 -0.33
9 AT1G15140 FAD/NAD(P)-binding oxidoreductase 0.78 0.32 -0.32
10 AT4G33530 K+ uptake permease 5 K+ uptake permease 5 0.78 0.3 -0.31
11 AT1G07140 Pleckstrin homology (PH) domain superfamily protein SIRANBP 0.77 0.34 -0.31
12 AT3G23300 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.77 0.32 -0.28
13 AT5G46790 PYR1-like 1 PYR1-like 1, regulatory components
of ABA receptor 12		 0.77 0.34 -0.32
14 AT4G11460 cysteine-rich RLK (RECEPTOR-like protein kinase) 30 cysteine-rich RLK (RECEPTOR-like
protein kinase) 30		 0.77 0.3 -0.28
15 AT5G47435 formyltetrahydrofolate deformylase, putative 0.77 0.33 -0.31
16 AT1G03870 FASCICLIN-like arabinoogalactan 9 FASCICLIN-like arabinoogalactan 9 0.77 0.3 -0.31
17 AT3G29575 ABI five binding protein 3 ABI five binding protein 3 -0.77 0.33 -0.31
18 AT4G21870 HSP20-like chaperones superfamily protein 0.77 0.32 -0.31
19 AT1G66940 protein kinase-related 0.76 0.31 -0.33
20 AT4G02280 sucrose synthase 3 ATSUS3, sucrose synthase 3 -0.76 0.31 -0.31
21 AT5G51460 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 ATTPPA 0.76 0.3 -0.32
22 AT2G40150 TRICHOME BIREFRINGENCE-LIKE 28 TRICHOME BIREFRINGENCE-LIKE 28 0.76 0.3 -0.33
23 AT4G16566 histidine triad nucleotide-binding 4 histidine triad nucleotide-binding
4		 0.75 0.3 -0.33
24 AT3G49680 branched-chain aminotransferase 3 ATBCAT-3, branched-chain
aminotransferase 3		 0.75 0.32 -0.3
25 AT5G17850 Sodium/calcium exchanger family protein -0.75 0.29 -0.31
26 AT1G15410 aspartate-glutamate racemase family 0.75 0.31 -0.32
27 AT2G02020 Major facilitator superfamily protein AtPTR4, peptide transporter 4 0.74 0.33 -0.31
28 AT1G60660 cytochrome B5-like protein ARABIDOPSIS CYTOCHROME B5-LIKE
PROTEIN, B5 #5, cytochrome B5-like
protein		 0.74 0.32 -0.33
29 AT5G06760 Late Embryogenesis Abundant 4-5 Late Embryogenesis Abundant 4-5,
Late Embryogenesis Abundant 4-5		 -0.74 0.33 -0.31
30 AT5G32450 RNA binding (RRM/RBD/RNP motifs) family protein 0.74 0.31 -0.33
31 AT5G57050 Protein phosphatase 2C family protein ABA INSENSITIVE 2, AtABI2 -0.74 0.35 -0.3
32 AT1G05055 general transcription factor II H2 ATGTF2H2, general transcription
factor II H2		 0.74 0.34 -0.33
33 AT3G50970 dehydrin family protein LOW TEMPERATURE-INDUCED 30, XERO2 -0.74 0.29 -0.31
34 AT4G37450 arabinogalactan protein 18 arabinogalactan protein 18,
ATAGP18		 0.74 0.32 -0.31
35 AT5G44020 HAD superfamily, subfamily IIIB acid phosphatase 0.74 0.32 -0.31
36 AT1G55740 seed imbibition 1 seed imbibition 1, raffinose
synthase 1, seed imbibition 1		 -0.74 0.31 -0.32
37 AT1G52690 Late embryogenesis abundant protein (LEA) family protein LATE EMBRYOGENESIS ABUNDANT 7 -0.73 0.32 -0.32
38 AT1G15710 prephenate dehydrogenase family protein 0.73 0.33 -0.31
39 AT3G48510 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G63350.1); Has 98 Blast hits
to 98 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.73 0.33 -0.3
40 AT1G22330 RNA-binding (RRM/RBD/RNP motifs) family protein 0.73 0.3 -0.31
41 AT3G06060 NAD(P)-binding Rossmann-fold superfamily protein TSC10A 0.73 0.3 -0.31
42 AT3G18060 transducin family protein / WD-40 repeat family protein 0.73 0.32 -0.3
43 AT5G59320 lipid transfer protein 3 lipid transfer protein 3 -0.73 0.34 -0.31
44 AT2G27030 calmodulin 5 ACAM-2, calmodulin 5 0.73 0.31 -0.33
45 AT2G20140 AAA-type ATPase family protein regulatory particle AAA-ATPase 2b 0.72 0.31 -0.31
46 AT5G16590 Leucine-rich repeat protein kinase family protein Leucine rich repeat protein 1 0.72 0.32 -0.3
47 AT1G65920 Regulator of chromosome condensation (RCC1) family with
FYVE zinc finger domain		 -0.72 0.29 -0.31
48 AT2G46270 G-box binding factor 3 G-box binding factor 3 -0.72 0.34 -0.3
49 AT2G37870 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.72 0.31 -0.3
50 AT1G18640 3-phosphoserine phosphatase 3-phosphoserine phosphatase 0.72 0.3 -0.33
51 AT3G09820 adenosine kinase 1 adenosine kinase 1, ATADK1 0.72 0.31 -0.33
52 AT1G62480 Vacuolar calcium-binding protein-related 0.72 0.31 -0.32
53 AT2G25870 haloacid dehalogenase-like hydrolase family protein 0.72 0.33 -0.32
54 AT1G49450 Transducin/WD40 repeat-like superfamily protein -0.72 0.33 -0.34
55 AT4G22910 FIZZY-related 2 cell cycle switch protein 52 A1,
FIZZY-related 2		 0.72 0.32 -0.32
56 AT1G64110 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 DUO1-activated ATPase 1 -0.71 0.3 -0.33
57 AT2G01070 Lung seven transmembrane receptor family protein 0.71 0.31 -0.31
58 AT5G52560 UDP-sugar pyrophosphorylase UDP-sugar pyrophosphorylase,
UDP-sugar pyrophosphorylase		 0.71 0.32 -0.31
59 AT4G33550 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.71 0.31 -0.31
60 AT5G60490 FASCICLIN-like arabinogalactan-protein 12 FASCICLIN-like
arabinogalactan-protein 12		 0.71 0.31 -0.32
61 AT3G25990 Homeodomain-like superfamily protein -0.71 0.3 -0.32
62 AT1G14730 Cytochrome b561/ferric reductase transmembrane protein
family		 -0.71 0.31 -0.33
63 AT5G40980 Protein of unknown function (DUF 3339) 0.71 0.33 -0.31
64 AT1G04220 3-ketoacyl-CoA synthase 2 3-ketoacyl-CoA synthase 2 -0.71 0.3 -0.33
65 AT3G25540 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing
protein		 LONGEVITY ASSURANCE GENE 1 0.71 0.32 -0.31
66 AT2G05755 Nodulin MtN21 /EamA-like transporter family protein 0.71 0.34 -0.31
67 AT1G21070 Nucleotide-sugar transporter family protein 0.7 0.33 -0.31
68 AT3G02480 Late embryogenesis abundant protein (LEA) family protein -0.7 0.32 -0.3
69 AT5G63560 HXXXD-type acyl-transferase family protein -0.7 0.3 -0.3
70 AT2G18050 histone H1-3 histone H1-3 -0.7 0.32 -0.32
71 AT5G54590 Protein kinase superfamily protein calcium/calmodulin-regulated
receptor-like kinase 1		 0.7 0.32 -0.3
72 AT2G31790 UDP-Glycosyltransferase superfamily protein 0.7 0.33 -0.31
73 AT2G45890 RHO guanyl-nucleotide exchange factor 4 RHO GUANYL-NUCLEOTIDE EXCHANGE
FACTOR 4, ROOT HAIR SPECIFIC 11,
RHO guanyl-nucleotide exchange
factor 4		 0.7 0.31 -0.32
74 AT4G21410 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 cysteine-rich RLK (RECEPTOR-like
protein kinase) 29		 0.7 0.32 -0.31
75 AT1G05340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 7 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G32210.1); Has 189 Blast
hits to 189 proteins in 27 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 21; Plants - 168; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink).		 -0.7 0.31 -0.31
76 AT1G53240 Lactate/malate dehydrogenase family protein mitochondrial malate dehydrogenase
1		 0.7 0.29 -0.32
77 AT2G30520 Phototropic-responsive NPH3 family protein ROOT PHOTOTROPISM 2 0.7 0.31 -0.31
78 AT4G27730 oligopeptide transporter 1 ARABIDOPSIS THALIANA OLIGOPEPTIDE
TRANSPORTER 6, oligopeptide
transporter 1		 0.69 0.34 -0.32
79 AT1G65620 Lateral organ boundaries (LOB) domain family protein ASYMMETRIC LEAVES 2 0.69 0.32 -0.33
80 AT3G58550 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.69 0.32 -0.34
81 AT4G30160 villin 4 ATVLN4, villin 4 0.69 0.31 -0.3
82 AT3G14850 TRICHOME BIREFRINGENCE-LIKE 41 TRICHOME BIREFRINGENCE-LIKE 41 0.69 0.3 -0.33
83 AT3G07950 rhomboid protein-related 0.69 0.31 -0.32
84 AT2G42900 Plant basic secretory protein (BSP) family protein 0.69 0.32 -0.31
85 AT1G75960 AMP-dependent synthetase and ligase family protein 0.69 0.34 -0.32
86 AT1G13440 glyceraldehyde-3-phosphate dehydrogenase C2 GLYCERALDEHYDE-3-PHOSPHATE
DEHYDROGENASE C-2,
glyceraldehyde-3-phosphate
dehydrogenase C2		 0.69 0.34 -0.33
87 AT1G72430 SAUR-like auxin-responsive protein family 0.69 0.35 -0.33
88 AT5G59310 lipid transfer protein 4 lipid transfer protein 4 -0.69 0.3 -0.31
89 AT5G50360 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G48510.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.68 0.32 -0.3
90 AT5G55500 beta-1,2-xylosyltransferase ARABIDOPSIS THALIANA
BETA-1,2-XYLOSYLTRANSFERASE,
beta-1,2-xylosyltransferase		 0.68 0.31 -0.31
91 AT3G56840 FAD-dependent oxidoreductase family protein 0.68 0.32 -0.33
92 AT2G27360 GDSL-like Lipase/Acylhydrolase superfamily protein 0.68 0.32 -0.31
93 AT4G17890 ARF-GAP domain 8 ARF-GAP domain 8 0.68 0.32 -0.32
94 AT3G10020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to oxidative stress, anaerobic
respiration; LOCATED IN: cellular_component unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; Has 47 Blast hits to 47 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0;
Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.68 0.32 -0.34
95 AT5G37500 gated outwardly-rectifying K+ channel gated outwardly-rectifying K+
channel		 -0.68 0.29 -0.31
96 AT3G61130 galacturonosyltransferase 1 galacturonosyltransferase 1, LGT1 0.68 0.34 -0.34
97 AT5G67560 ADP-ribosylation factor-like A1D ADP-ribosylation factor-like A1D,
ADP-ribosylation factor-like A1D		 0.68 0.31 -0.33
98 AT5G04370 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 NAMT1 -0.68 0.32 -0.32
99 AT1G12100 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.68 0.32 -0.31
100 AT4G14270 Protein containing PAM2 motif which mediates interaction
with the PABC domain of polyadenyl binding proteins.		 -0.68 0.33 -0.31
101 AT5G11110 sucrose phosphate synthase 2F sucrose phosphate synthase 2F,
KAONASHI 2, SUCROSE PHOSPHATE
SYNTHASE 1, sucrose phosphate
synthase 2F, sucrose-phosphate
synthase A2		 -0.68 0.3 -0.32
102 AT2G44210 Protein of Unknown Function (DUF239) 0.68 0.3 -0.31
103 AT1G13320 protein phosphatase 2A subunit A3 protein phosphatase 2A subunit A3 0.68 0.31 -0.32
104 AT2G18370 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.68 0.3 -0.34
105 AT1G05430 unknown protein; Has 31 Blast hits to 31 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.68 0.29 -0.31
106 AT4G39350 cellulose synthase A2 ATCESA2, ATH-A, cellulose synthase
A2		 0.68 0.3 -0.31
107 AT3G20560 PDI-like 5-3 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 12, PDI-like
5-3, PROTEIN DISULFIDE ISOMERASE
12, PDI-like 5-3		 0.68 0.31 -0.3
108 AT5G58700 phosphatidylinositol-speciwc phospholipase C4 ATPLC4,
phosphatidylinositol-speciwc
phospholipase C4		 -0.67 0.34 -0.33
109 AT2G46920 Protein phosphatase 2C family protein poltergeist -0.67 0.31 -0.31
110 AT3G03170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G24890.1); Has 184 Blast hits
to 184 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.32 -0.32
111 AT1G19850 Transcriptional factor B3 family protein / auxin-responsive
factor AUX/IAA-related		 AUXIN RESPONSE FACTOR 5,
indole-3-acetic acid inducible 24,
MONOPTEROS		 -0.67 0.32 -0.31
112 AT3G24310 myb domain protein 305 MYB DOMAIN PROTEIN 71, myb domain
protein 305		 -0.67 0.34 -0.32
113 AT1G80110 phloem protein 2-B11 phloem protein 2-B11, phloem
protein 2-B11		 -0.66 0.32 -0.31
114 AT1G67920 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G24600.1); Has 22 Blast hits
to 22 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.31 -0.35
115 AT4G27260 Auxin-responsive GH3 family protein GH3.5, WES1 -0.66 0.31 -0.29
116 AT5G12930 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.65 0.32 -0.31
117 AT1G66830 Leucine-rich repeat protein kinase family protein -0.65 0.32 -0.29
118 AT2G23120 Late embryogenesis abundant protein, group 6 -0.65 0.34 -0.3
119 AT4G36740 homeobox protein 40 homeobox protein 40, HB-5,
homeobox protein 40		 -0.64 0.32 -0.3
120 AT1G69270 receptor-like protein kinase 1 receptor-like protein kinase 1 -0.64 0.33 -0.3
121 AT2G22590 UDP-Glycosyltransferase superfamily protein -0.64 0.31 -0.3
122 AT5G67250 SKP1/ASK1-interacting protein 2 SKP1/ASK1-interacting protein 2,
VIER F-BOX PROTEINE 4		 -0.64 0.3 -0.33
123 AT3G62090 phytochrome interacting factor 3-like 2 PHYTOCHROME-INTERACTING FACTOR 6,
phytochrome interacting factor
3-like 2		 -0.64 0.33 -0.32
124 AT3G19290 ABRE binding factor 4 ABRE binding factor 4,
ABA-RESPONSIVE ELEMENT BINDING
PROTEIN 2		 -0.64 0.34 -0.31
125 AT5G66780 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.63 0.3 -0.31
126 AT1G11210 Protein of unknown function (DUF761) -0.63 0.31 -0.33
127 AT4G15910 drought-induced 21 drought-induced 21,
drought-induced 21		 -0.63 0.32 -0.32
128 AT5G14130 Peroxidase superfamily protein -0.63 0.31 -0.31
129 AT3G62130 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 L-cysteine desulfhydrase -0.63 0.28 -0.32
130 AT1G78780 pathogenesis-related family protein -0.62 0.3 -0.3
131 AT5G56980 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 18 plant structures;
EXPRESSED DURING: 12 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G26130.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.62 0.32 -0.33
132 AT1G50630 Protein of unknown function (DUF3537) -0.62 0.3 -0.32
133 AT5G01870 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.62 0.3 -0.3
134 AT2G45830 downstream target of AGL15 2 downstream target of AGL15 2 -0.61 0.32 -0.32
135 AT2G01150 RING-H2 finger protein 2B RING-H2 finger protein 2B -0.61 0.33 -0.33
136 AT3G22830 heat shock transcription factor A6B ARABIDOPSIS THALIANA HEAT SHOCK
TRANSCRIPTION FACTOR A6B, heat
shock transcription factor A6B		 -0.61 0.33 -0.31
137 AT3G13175 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 18 plant structures;
EXPRESSED DURING: 12 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.33 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
138 C0017 sn-Glycero-3-phosphocholine sn-Glycero-3-phosphocholine L-1-Glycero-3-phosphocholine - -0.81 0.43 -0.45 C0017
139 C0189 Nicotinic acid - Nicotinate pyridine nucleotide cycling (plants),
aldoxime degradation 		-0.73 0.32 -0.31 C0189
140 C0146 Mannitol D-Mannitol Mannitol mannitol degradation II -0.65 0.45 -0.44 C0146