AT3G11560 : -
Query Information
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AGICode AT3G11560
Description LETM1-like protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G11560 LETM1-like protein 1 0.3 -0.33
2 AT1G20870 HSP20-like chaperones superfamily protein 0.88 0.33 -0.31
3 AT4G10470 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G33050.2); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.85 0.31 -0.29
4 AT2G21960 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in
59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi -
0; Plants - 134; Viruses - 0; Other Eukaryotes - 25
(source: NCBI BLink).		 0.85 0.34 -0.31
5 AT4G26700 fimbrin 1 ARABIDOPSIS THALIANA FIMBRIN 1,
fimbrin 1		 0.85 0.3 -0.34
6 AT2G45810 DEA(D/H)-box RNA helicase family protein 0.85 0.33 -0.32
7 AT1G22850 SNARE associated Golgi protein family 0.84 0.28 -0.31
8 AT4G30690 Translation initiation factor 3 protein 0.84 0.31 -0.33
9 AT3G22420 with no lysine (K) kinase 2 ARABIDOPSIS THALIANA WITH NO K 2,
with no lysine (K) kinase 2, ZIK3		 0.83 0.32 -0.35
10 AT3G02690 nodulin MtN21 /EamA-like transporter family protein 0.83 0.3 -0.31
11 AT1G67080 abscisic acid (aba)-deficient 4 abscisic acid (ABA)-deficient 4 0.82 0.31 -0.32
12 AT5G04140 glutamate synthase 1 FERREDOXIN-DEPENDENT GLUTAMATE
SYNTHASE, FERREDOXIN-DEPENDENT
GLUTAMATE SYNTHASE 1, glutamate
synthase 1, GLUS		 0.82 0.3 -0.33
13 AT4G01800 Albino or Glassy Yellow 1 Albino or Glassy Yellow 1,
Arabidopsis thaliana chloroplast
SecA, SECA1		 0.82 0.31 -0.32
14 AT2G45150 cytidinediphosphate diacylglycerol synthase 4 cytidinediphosphate diacylglycerol
synthase 4		 0.82 0.3 -0.3
15 AT3G01370 CRM family member 2 Arabidopsis thaliana CRM family
member 2, CRM family member 2		 0.82 0.31 -0.31
16 AT2G48120 pale cress protein (PAC) PALE CRESS 0.82 0.35 -0.31
17 AT3G46440 UDP-XYL synthase 5 UDP-XYL synthase 5 -0.81 0.34 -0.34
18 AT4G33500 Protein phosphatase 2C family protein 0.81 0.3 -0.33
19 AT2G29300 NAD(P)-binding Rossmann-fold superfamily protein 0.8 0.33 -0.31
20 AT2G46910 Plastid-lipid associated protein PAP / fibrillin family
protein		 0.8 0.31 -0.32
21 AT5G14460 Pseudouridine synthase family protein 0.8 0.33 -0.32
22 AT3G61610 Galactose mutarotase-like superfamily protein 0.79 0.33 -0.32
23 AT1G49180 protein kinase family protein 0.79 0.32 -0.31
24 AT1G15180 MATE efflux family protein 0.79 0.31 -0.32
25 AT3G57190 peptide chain release factor, putative peptide chain release factor 3 0.79 0.29 -0.32
26 AT5G56850 unknown protein; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink).		 0.79 0.3 -0.3
27 AT1G65010 Plant protein of unknown function (DUF827) 0.78 0.33 -0.32
28 AT1G75240 homeobox protein 33 homeobox protein 33, homeobox
protein 33, zinc-finger
homeodomain 5		 0.78 0.32 -0.3
29 AT1G67830 alpha-fucosidase 1 Arabidopsis thaliana
alpha-fucosidase 1,
alpha-fucosidase 1		 0.78 0.33 -0.32
30 AT4G15560 Deoxyxylulose-5-phosphate synthase AtCLA1, CLA, CLOROPLASTOS
ALTERADOS 1, DEF,
1-DEOXY-D-XYLULOSE 5-PHOSPHATE
SYNTHASE 2, 1-DEOXY-D-XYLULOSE
5-PHOSPHATE SYNTHASE		 0.78 0.31 -0.31
31 AT1G73170 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.78 0.31 -0.3
32 AT4G39820 Tetratricopeptide repeat (TPR)-like superfamily protein -0.78 0.31 -0.3
33 AT3G54960 PDI-like 1-3 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 1, PDI-like
1-3, PROTEIN DISULFIDE ISOMERASE
1, PDI-like 1-3		 -0.77 0.32 -0.31
34 AT5G65685 UDP-Glycosyltransferase superfamily protein 0.77 0.32 -0.32
35 AT5G24000 Protein of unknown function (DUF819) 0.77 0.31 -0.33
36 AT3G29375 XH domain-containing protein 0.77 0.32 -0.31
37 AT5G07240 IQ-domain 24 IQ-domain 24 0.77 0.31 -0.32
38 AT3G20930 RNA-binding (RRM/RBD/RNP motifs) family protein 0.77 0.32 -0.32
39 AT1G70100 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G24160.2); Has 3037 Blast hits
to 2309 proteins in 344 species: Archae - 6; Bacteria -
672; Metazoa - 1089; Fungi - 230; Plants - 220; Viruses -
37; Other Eukaryotes - 783 (source: NCBI BLink).		 0.77 0.31 -0.31
40 AT1G71810 Protein kinase superfamily protein 0.77 0.28 -0.32
41 AT1G74370 RING/U-box superfamily protein 0.77 0.33 -0.32
42 AT3G56040 UDP-glucose pyrophosphorylase 3 UDP-glucose pyrophosphorylase 3 0.76 0.32 -0.32
43 AT2G17290 Calcium-dependent protein kinase family protein ARABIDOPSIS THALIANA
CALMODULIN-DOMAIN PROTEIN KINASE
3, ARABIDOPSIS THALIANA
CALCIUM-DEPENDENT PROTEIN KINASE
6, calcium dependent protein
kinase 6		 -0.76 0.33 -0.29
44 AT2G35800 mitochondrial substrate carrier family protein S-adenosyl methionine
transporter-like		 0.76 0.32 -0.33
45 AT5G13410 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.76 0.31 -0.31
46 AT4G33666 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 11 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.76 0.31 -0.33
47 AT2G45620 Nucleotidyltransferase family protein 0.76 0.31 -0.31
48 AT3G61080 Protein kinase superfamily protein 0.76 0.34 -0.31
49 AT2G39560 Putative membrane lipoprotein 0.75 0.31 -0.32
50 AT2G22990 sinapoylglucose 1 SERINE CARBOXYPEPTIDASE-LIKE 8,
sinapoylglucose 1		 0.75 0.33 -0.33
51 AT5G04900 NYC1-like NYC1-like 0.75 0.34 -0.33
52 AT2G28470 beta-galactosidase 8 beta-galactosidase 8 0.75 0.3 -0.33
53 AT3G17420 glyoxysomal protein kinase 1 glyoxysomal protein kinase 1 -0.75 0.34 -0.34
54 AT4G32980 homeobox gene 1 homeobox gene 1 0.75 0.33 -0.31
55 AT4G30993 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.75 0.31 -0.3
56 AT5G33280 Voltage-gated chloride channel family protein 0.75 0.29 -0.32
57 AT4G09900 methyl esterase 12 ARABIDOPSIS THALIANA METHYL
ESTERASE 12, methyl esterase 12		 0.75 0.3 -0.29
58 AT3G02360 6-phosphogluconate dehydrogenase family protein -0.74 0.3 -0.33
59 AT5G35200 ENTH/ANTH/VHS superfamily protein -0.74 0.3 -0.33
60 AT1G18390 Protein kinase superfamily protein -0.74 0.28 -0.32
61 AT5G51830 pfkB-like carbohydrate kinase family protein -0.74 0.33 -0.3
62 AT3G50260 cooperatively regulated by ethylene and jasmonate 1 ATERF#011, cooperatively regulated
by ethylene and jasmonate 1, DREB
AND EAR MOTIF PROTEIN 1		 -0.74 0.32 -0.32
63 AT4G39390 nucleotide sugar transporter-KT 1 A. THALIANA NUCLEOTIDE SUGAR
TRANSPORTER-KT 1, nucleotide sugar
transporter-KT 1		 -0.74 0.33 -0.31
64 AT3G26470 Powdery mildew resistance protein, RPW8 domain -0.73 0.31 -0.32
65 AT1G29310 SecY protein transport family protein -0.73 0.31 -0.32
66 AT2G04040 MATE efflux family protein ATDTX1, detoxification 1, TX1 -0.72 0.33 -0.31
67 AT1G01730 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 42 Blast hits to 42 proteins
in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi
- 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.72 0.32 -0.31
68 AT1G18480 Calcineurin-like metallo-phosphoesterase superfamily
protein		 AtSLP2, Shewenella-like protein
phosphatase 2		 -0.72 0.31 -0.3
69 AT1G06010 unknown protein; Has 25 Blast hits to 25 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.72 0.32 -0.32
70 AT4G31810 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 -0.72 0.32 -0.32
71 AT5G61010 exocyst subunit exo70 family protein E2 exocyst subunit exo70 family
protein E2, exocyst subunit exo70
family protein E2		 -0.71 0.32 -0.3
72 AT4G18010 myo-inositol polyphosphate 5-phosphatase 2 myo-inositol polyphosphate
5-phosphatase 2, myo-inositol
polyphosphate 5-phosphatase 2,
INOSITOL(1,4,5)P3 5-PHOSPHATASE II		 -0.71 0.33 -0.34
73 AT1G08830 copper/zinc superoxide dismutase 1 copper/zinc superoxide dismutase 1 -0.71 0.33 -0.34
74 AT5G42150 Glutathione S-transferase family protein -0.71 0.32 -0.31
75 AT1G08030 tyrosylprotein sulfotransferase active quiescent center1,
tyrosylprotein sulfotransferase		 -0.71 0.33 -0.32
76 AT1G28390 Protein kinase superfamily protein -0.71 0.31 -0.32
77 AT5G54500 flavodoxin-like quinone reductase 1 flavodoxin-like quinone reductase
1		 -0.71 0.32 -0.31
78 AT5G35735 Auxin-responsive family protein -0.7 0.31 -0.32
79 AT1G21100 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 1		 -0.7 0.32 -0.35
80 AT1G28680 HXXXD-type acyl-transferase family protein -0.7 0.32 -0.31
81 AT4G35260 isocitrate dehydrogenase 1 isocitrate dehydrogenase I,
isocitrate dehydrogenase 1		 -0.7 0.33 -0.33
82 AT2G37250 adenosine kinase adenosine kinase, ATPADK1 -0.69 0.31 -0.33
83 AT5G37600 glutamine synthase clone R1 ARABIDOPSIS GLUTAMINE SYNTHASE
1;1, ARABIDOPSIS THALIANA
GLUTAMINE SYNTHASE CLONE R1,
GLUTAMINE SYNTHASE 1;1, glutamine
synthase clone R1		 -0.69 0.33 -0.33
84 AT3G51100 unknown protein; Has 48 Blast hits to 48 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.69 0.32 -0.35
85 AT5G47960 RAB GTPase homolog A4C RAB GTPase homolog A4C, RAB GTPase
homolog A4C, SMALL MOLECULAR
WEIGHT G-PROTEIN 1		 -0.69 0.28 -0.32
86 AT1G23100 GroES-like family protein -0.69 0.34 -0.33
87 AT5G35680 Nucleic acid-binding, OB-fold-like protein -0.69 0.32 -0.33
88 AT1G20270 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.69 0.32 -0.31
89 AT5G22060 DNAJ homologue 2 ARABIDOPSIS THALIANA DNAJ
HOMOLOGUE 2, DNAJ homologue 2		 -0.69 0.33 -0.29
90 AT2G18690 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
membrane; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF975 (InterPro:IPR010380);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G18680.1); Has 213 Blast hits to 211 proteins in
20 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi -
0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.69 0.3 -0.3
91 AT3G49780 phytosulfokine 4 precursor ATPSK3 (FORMER SYMBOL),
phytosulfokine 4 precursor,
phytosulfokine 4 precursor		 -0.68 0.34 -0.32
92 AT5G22300 nitrilase 4 NITRILASE 4, nitrilase 4 -0.68 0.31 -0.29
93 AT5G18800 Cox19-like CHCH family protein -0.68 0.31 -0.3
94 AT2G30000 PHF5-like protein -0.68 0.32 -0.32
95 AT1G18390 Protein kinase superfamily protein -0.68 0.31 -0.3
96 AT4G32680 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G52343.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.68 0.32 -0.31
97 AT5G62290 nucleotide-sensitive chloride conductance regulator (ICln)
family protein		 -0.68 0.29 -0.33
98 AT3G12700 Eukaryotic aspartyl protease family protein -0.68 0.33 -0.32
99 AT5G56170 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 LORELEI-LIKE-GPI-ANCHORED PROTEIN
1		 -0.67 0.31 -0.31
100 AT5G20480 EF-TU receptor EF-TU receptor -0.67 0.31 -0.31
101 AT3G17910 Surfeit locus 1 cytochrome c oxidase biogenesis protein EMBRYO DEFECTIVE 3121, SURFEIT 1 -0.67 0.33 -0.34
102 AT1G07030 Mitochondrial substrate carrier family protein -0.67 0.33 -0.31
103 AT1G08220 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
mitochondrial proton-transporting ATP synthase complex
assembly; LOCATED IN: mitochondrial inner membrane;
EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7
growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly
factor ATP10, mitochondria (InterPro:IPR007849); Has 168
Blast hits to 168 proteins in 86 species: Archae - 6;
Bacteria - 0; Metazoa - 2; Fungi - 107; Plants - 30;
Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).		 -0.67 0.31 -0.34
104 AT1G22840 CYTOCHROME C-1 CYTOCHROME C-A, CYTOCHROME C-1 -0.67 0.33 -0.31
105 AT3G53600 C2H2-type zinc finger family protein -0.66 0.32 -0.32
106 AT2G46740 D-arabinono-1,4-lactone oxidase family protein -0.66 0.31 -0.29
107 AT2G17280 Phosphoglycerate mutase family protein -0.66 0.32 -0.31
108 AT3G60450 Phosphoglycerate mutase family protein -0.66 0.29 -0.35
109 AT4G37400 cytochrome P450, family 81, subfamily F, polypeptide 3 cytochrome P450, family 81,
subfamily F, polypeptide 3		 -0.66 0.34 -0.31
110 AT2G03510 SPFH/Band 7/PHB domain-containing membrane-associated
protein family		 -0.66 0.32 -0.31
111 AT2G46140 Late embryogenesis abundant protein -0.66 0.32 -0.33
112 AT1G09210 calreticulin 1b AtCRT1b, calreticulin 1b -0.65 0.32 -0.31
113 AT1G64520 regulatory particle non-ATPase 12A regulatory particle non-ATPase 12A -0.65 0.32 -0.31
114 AT1G56080 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 12 plant structures; EXPRESSED
DURING: 6 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G16520.1); Has 196 Blast
hits to 193 proteins in 50 species: Archae - 2; Bacteria -
0; Metazoa - 9; Fungi - 2; Plants - 132; Viruses - 0; Other
Eukaryotes - 51 (source: NCBI BLink).		 -0.65 0.3 -0.32
115 AT2G03730 ACT domain repeat 5 ACT domain repeat 5 -0.65 0.3 -0.33
116 AT1G51840 protein kinase-related -0.65 0.31 -0.32
117 AT5G53290 cytokinin response factor 3 cytokinin response factor 3 -0.65 0.3 -0.33
118 AT5G03630 Pyridine nucleotide-disulphide oxidoreductase family
protein		 ATMDAR2 -0.65 0.3 -0.3
119 AT3G46060 RAB GTPase homolog 8A ARA-3, ARA3, RAB GTPase homolog
8A, ATRABE1C, RAB GTPase homolog
8A, RABE1c		 -0.65 0.33 -0.34
120 AT2G34020 Calcium-binding EF-hand family protein -0.65 0.33 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
121 C0133 Kaempferol-3,7-O-α-dirhamnopyranoside Kaempferol-3,7-O-α-L-dirhamnopyranoside Kaempferol-3-rhamnoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.85 0.47 -0.47 C0133