AT3G05090 : LATERAL ROOT STIMULATOR 1
Query Information
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AGICode AT3G05090
Description Transducin/WD40 repeat-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G05090 Transducin/WD40 repeat-like superfamily protein LATERAL ROOT STIMULATOR 1 1 0.34 -0.33
2 AT4G10220 Protein of Unknown Function (DUF239) 0.8 0.3 -0.32
3 AT5G39620 RAB GTPase homolog G1 RAB GTPase homolog G1, RAB GTPase
homolog G1		 0.76 0.31 -0.29
4 AT1G27820 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.74 0.31 -0.31
5 AT1G43140 Cullin family protein 0.73 0.32 -0.32
6 ATMG00820 Reverse transcriptase (RNA-dependent DNA polymerase) ORF170 0.73 0.33 -0.31
7 AT1G57780 heavy-metal-associated domain-containing protein -0.72 0.3 -0.34
8 AT5G34900 transposable element gene 0.72 0.32 -0.32
9 AT3G19880 F-box and associated interaction domains-containing protein 0.71 0.32 -0.3
10 AT3G29690 HXXXD-type acyl-transferase family protein -0.71 0.29 -0.32
11 AT3G27700 zinc finger (CCCH-type) family protein / RNA recognition
motif (RRM)-containing protein		 0.71 0.3 -0.3
12 AT3G13170 Spo11/DNA topoisomerase VI, subunit A protein ATSPO11-1 0.71 0.3 -0.33
13 AT5G37640 ubiquitin 9 ubiquitin 9 -0.7 0.31 -0.29
14 AT2G37320 Tetratricopeptide repeat (TPR)-like superfamily protein -0.7 0.33 -0.33
15 AT5G11530 embryonic flower 1 (EMF1) embryonic flower 1 -0.7 0.31 -0.31
16 AT3G15890 Protein kinase superfamily protein -0.7 0.31 -0.3
17 AT4G31760 Peroxidase superfamily protein 0.7 0.31 -0.34
18 AT2G42450 alpha/beta-Hydrolases superfamily protein 0.7 0.33 -0.31
19 AT3G18480 CCAAT-displacement protein alternatively spliced product CCAAT-displacement protein
alternatively spliced product,
CCAAT-displacement protein
alternatively spliced product		 0.7 0.3 -0.32
20 AT4G03640 transposable element gene 0.69 0.34 -0.31
21 AT4G13020 Protein kinase superfamily protein MHK 0.69 0.33 -0.32
22 AT4G20235 cytochrome P450, family 71, subfamily A, polypeptide 28 cytochrome P450, family 71,
subfamily A, polypeptide 28		 0.69 0.32 -0.31
23 AT1G28070 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G33510.1); Has 85 Blast hits
to 77 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.69 0.29 -0.31
24 AT5G49590 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.68 0.34 -0.34
25 AT1G42480 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF3456
(InterPro:IPR021852); Has 177 Blast hits to 177 proteins in
59 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi
- 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2
(source: NCBI BLink).		 0.68 0.31 -0.3
26 AT1G69210 Uncharacterised protein family UPF0090 0.68 0.31 -0.31
27 AT4G13780 methionine--tRNA ligase, putative / methionyl-tRNA
synthetase, putative / MetRS, putative		 0.68 0.32 -0.32
28 AT5G37420 Family of unknown function (DUF577) 0.68 0.33 -0.34
29 AT4G00940 Dof-type zinc finger DNA-binding family protein -0.68 0.3 -0.31
30 AT1G26970 Protein kinase superfamily protein -0.68 0.32 -0.32
31 AT1G23910 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.67 0.3 -0.31
32 AT3G06230 MAP kinase kinase 8 MAP kinase kinase 8, MAP kinase
kinase 8		 0.67 0.31 -0.32
33 AT1G78470 BEST Arabidopsis thaliana protein match is: F-box family
protein (TAIR:AT1G67390.1); Has 40 Blast hits to 40
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.67 0.34 -0.34
34 AT3G56610 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: embryo, sperm cell,
sepal, pedicel, synergid; EXPRESSED DURING: 4 anthesis, C
globular stage; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF784, Arabidopsis thaliana
(InterPro:IPR008502); Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.67 0.32 -0.3
35 AT5G38260 Protein kinase superfamily protein 0.67 0.33 -0.31
36 AT5G56250 hapless 8 HAPLESS 8 0.67 0.31 -0.32
37 AT2G16190 BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT1G49330.1); Has 77 Blast hits to 77 proteins in 25
species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 13;
Plants - 56; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.67 0.3 -0.32
38 AT5G35820 transposable element gene -0.67 0.32 -0.32
39 AT2G37720 TRICHOME BIREFRINGENCE-LIKE 15 TRICHOME BIREFRINGENCE-LIKE 15 -0.67 0.31 -0.31
40 AT2G30090 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.67 0.33 -0.3
41 AT5G43710 Glycosyl hydrolase family 47 protein 0.66 0.32 -0.3
42 AT5G18160 F-box and associated interaction domains-containing protein -0.66 0.31 -0.32
43 AT2G31740 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.66 0.31 -0.32
44 AT1G61750 Receptor-like protein kinase-related family protein -0.66 0.31 -0.31
45 AT3G57680 Peptidase S41 family protein -0.66 0.32 -0.32
46 AT1G36150 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.66 0.33 -0.3
47 AT1G32850 ubiquitin-specific protease 11 ubiquitin-specific protease 11 0.66 0.34 -0.32
48 AT5G28070 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.66 0.33 -0.3
49 AT3G31915 transposable element gene -0.66 0.32 -0.3
50 AT5G23750 Remorin family protein -0.65 0.32 -0.34
51 AT5G35700 fimbrin-like protein 2 fimbrin-like protein 2, FIMBRIN5 0.65 0.32 -0.32
52 AT2G05850 serine carboxypeptidase-like 38 serine carboxypeptidase-like 38 -0.65 0.34 -0.31
53 AT2G06120 transposable element gene 0.65 0.31 -0.31
54 AT3G54510 Early-responsive to dehydration stress protein (ERD4) 0.65 0.33 -0.33
55 AT2G20280 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.65 0.31 -0.31
56 AT4G05500 pseudogene, F-box protein family, AtFBL9/AtFBL23, contains
similarity to N7 protein GI:3273101 from (Medicago
truncatula); blastp match of 39% identity and 1.6e-34
P-value to GP|3273101|emb|CAA76808.1||Y17613 N7 protein
{Medicago truncatula}		 0.65 0.31 -0.31
57 AT2G24370 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 0.65 0.3 -0.3
58 AT1G46336 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.65 0.29 -0.33
59 AT2G30660 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 0.65 0.32 -0.32
60 AT5G11290 Plant protein of unknown function (DUF247) 0.65 0.29 -0.31
61 AT1G48095 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G36960.1); Has 82 Blast hits
to 82 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.65 0.33 -0.31
62 AT3G49270 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING:
4 anthesis, C globular stage, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: proline-rich family protein (TAIR:AT3G49300.1); Has 63
Blast hits to 43 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 31; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 -0.65 0.32 -0.32
63 AT2G26420 1-phosphatidylinositol-4-phosphate 5-kinase 3 1-phosphatidylinositol-4-phosphate
5-kinase 3		 -0.65 0.32 -0.31
64 AT1G27040 Major facilitator superfamily protein 0.65 0.32 -0.31
65 AT3G12250 TGACG motif-binding factor 6 BZIP45, TGACG motif-binding factor
6		 -0.65 0.31 -0.33
66 AT1G50340 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.65 0.29 -0.31
67 AT2G17660 RPM1-interacting protein 4 (RIN4) family protein -0.65 0.3 -0.34
68 AT1G48980 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.64 0.33 -0.32
69 AT2G27350 OTU-like cysteine protease family protein otubain-like deubiquitinase 1 0.64 0.33 -0.3
70 AT4G39780 Integrase-type DNA-binding superfamily protein 0.64 0.29 -0.3
71 AT5G60090 Protein kinase superfamily protein 0.64 0.32 -0.31
72 AT5G04000 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.64 0.32 -0.32
73 AT2G05900 SET domain protein 11 SET domain protein 11, SU(VAR)3-9
HOMOLOG 10		 0.64 0.31 -0.29
74 AT4G36890 Nucleotide-diphospho-sugar transferases superfamily protein irregular xylem 14 0.64 0.33 -0.33
75 AT3G13070 CBS domain-containing protein / transporter associated
domain-containing protein		 0.64 0.33 -0.32
76 AT3G20190 Leucine-rich repeat protein kinase family protein -0.64 0.34 -0.32
77 AT5G63200 tetratricopeptide repeat (TPR)-containing protein 0.64 0.33 -0.32
78 AT3G29640 transposable element gene -0.64 0.32 -0.32
79 AT5G42340 Plant U-Box 15 Plant U-Box 15 -0.63 0.29 -0.32
80 AT3G04280 response regulator 22 response regulator 22, response
regulator 22		 -0.63 0.32 -0.31
81 AT3G42290 transposable element gene -0.63 0.32 -0.3
82 AT2G32850 Protein kinase superfamily protein 0.63 0.31 -0.31
83 AT4G03480 Ankyrin repeat family protein -0.63 0.32 -0.32
84 AT1G05330 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.63 0.34 -0.32
85 AT3G02280 Flavodoxin family protein 0.63 0.32 -0.32
86 AT2G31910 cation/H+ exchanger 21 cation/H+ exchanger 21, cation/H+
exchanger 21		 0.63 0.31 -0.3
87 AT2G23160 F-box family protein 0.63 0.31 -0.3
88 AT3G11240 arginine-tRNA protein transferase 2 ATATE2, arginine-tRNA protein
transferase 2		 0.63 0.32 -0.33
89 AT1G13460 Protein phosphatase 2A regulatory B subunit family protein 0.62 0.31 -0.31
90 AT1G04500 CCT motif family protein 0.62 0.31 -0.33
91 AT2G20790 clathrin adaptor complexes medium subunit family protein 0.62 0.32 -0.34
92 AT4G33810 Glycosyl hydrolase superfamily protein -0.62 0.31 -0.32
93 AT5G05700 arginine-tRNA protein transferase 1 ATATE1, arginine-tRNA protein
transferase 1, DELAYED LEAF
SENESCENCE 1		 0.62 0.31 -0.32
94 AT5G10290 leucine-rich repeat transmembrane protein kinase family
protein		 0.62 0.31 -0.31
95 AT5G35640 Putative endonuclease or glycosyl hydrolase 0.62 0.33 -0.35
96 AT3G04250 F-box associated ubiquitination effector family protein 0.62 0.3 -0.32
97 AT2G26350 peroxin 10 ATPEX10, peroxin 10 0.62 0.31 -0.31
98 AT1G03170 Protein of unknown function (DUF3049) FANTASTIC FOUR 2 0.62 0.3 -0.35
99 AT4G33290 F-box and associated interaction domains-containing protein 0.62 0.33 -0.31
100 AT3G30846 transposable element gene -0.62 0.33 -0.35
101 AT2G12880 Zinc knuckle (CCHC-type) family protein -0.62 0.31 -0.3
102 AT3G17330 evolutionarily conserved C-terminal region 6 evolutionarily conserved
C-terminal region 6		 -0.62 0.34 -0.31
103 AT3G47420 phosphate starvation-induced gene 3 Glycerol-3-phosphate permease 1,
phosphate starvation-induced gene
3, Glycerol-3-phosphate permease
1, phosphate starvation-induced
gene 3		 0.62 0.32 -0.35
104 AT3G14400 ubiquitin-specific protease 25 ubiquitin-specific protease 25 0.62 0.31 -0.32
105 AT5G39420 CDC2C CDC2C -0.62 0.34 -0.32
106 AT1G58210 kinase interacting family protein EMBRYO DEFECTIVE 1674 0.62 0.3 -0.31
107 AT1G01410 pumilio 22 pumilio 22, pumilio 22 0.62 0.33 -0.34
108 AT1G68360 C2H2 and C2HC zinc fingers superfamily protein -0.62 0.32 -0.32
109 AT1G52660 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.61 0.3 -0.31
110 AT1G36910 transposable element gene -0.61 0.35 -0.31
111 ATMG00320 hypothetical protein ORF127 -0.61 0.31 -0.32
112 AT4G01120 G-box binding factor 2 BASIC REGION/LEUCINE ZIPPER MOTIF
5, G-box binding factor 2		 -0.61 0.31 -0.32
113 AT3G53150 UDP-glucosyl transferase 73D1 UDP-glucosyl transferase 73D1 -0.61 0.31 -0.3
114 AT3G07880 Immunoglobulin E-set superfamily protein SUPERCENTIPEDE1 -0.61 0.33 -0.35
115 AT4G22640 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.61 0.32 -0.35
116 AT3G43320 transposable element gene -0.61 0.32 -0.3
117 AT4G16447 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.6 0.31 -0.33
118 AT4G29200 Beta-galactosidase related protein -0.6 0.34 -0.33
119 AT3G21660 UBX domain-containing protein -0.6 0.31 -0.32
120 AT3G08800 ARM repeat superfamily protein SHORT-ROOT interacting embryonic
lethal		 -0.6 0.32 -0.31
121 AT5G45920 SGNH hydrolase-type esterase superfamily protein -0.6 0.3 -0.31
122 AT3G16730 CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex,
subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to
211 proteins in 82 species: Archae - 0; Bacteria - 0;
Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other
Eukaryotes - 66 (source: NCBI BLink).		 hypersensitive to excess boron 2 -0.6 0.32 -0.32
123 AT5G37900 TRAF-like superfamily protein -0.59 0.31 -0.3
124 AT2G19000 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal
differentiation and expansion stage; Has 71 Blast hits to
71 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 0; Plants - 69; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.29 -0.31
125 AT3G23680 F-box associated ubiquitination effector family protein -0.59 0.34 -0.33
126 AT1G65110 Ubiquitin carboxyl-terminal hydrolase-related protein -0.59 0.31 -0.3
127 AT1G24060 unknown protein; Has 7 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.59 0.31 -0.33
128 AT3G62890 Pentatricopeptide repeat (PPR) superfamily protein -0.59 0.31 -0.34
129 AT1G31050 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.59 0.35 -0.31
130 AT2G15790 peptidyl-prolyl cis-trans isomerase / cyclophilin-40
(CYP40) / rotamase		 CYCLOPHILIN 40, SQUINT -0.59 0.32 -0.31
131 AT2G06960 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.58 0.32 -0.32
132 AT2G14830 Regulator of Vps4 activity in the MVB pathway protein -0.58 0.3 -0.34
133 AT5G49750 Leucine-rich repeat (LRR) family protein -0.58 0.32 -0.3
134 AT1G55580 GRAS family transcription factor Lateral Suppressor, SCARECROW-LIKE
18		 -0.58 0.33 -0.29
135 AT5G48200 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.58 0.29 -0.3
136 AT5G42640 C2H2 and C2HC zinc fingers superfamily protein -0.58 0.3 -0.34
137 AT2G47570 Ribosomal protein L18e/L15 superfamily protein -0.58 0.32 -0.3
138 AT3G30230 myosin heavy chain-related -0.58 0.34 -0.31
139 AT3G45860 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 cysteine-rich RLK (RECEPTOR-like
protein kinase) 4		 -0.58 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
140 C0083 Digalactosyldiacylglycerol-36:4 - Digalactosyldiacylglycerol-36:4 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.74 0.48 -0.51 C0083
141 C0084 Digalactosyldiacylglycerol-36:5 - Digalactosyldiacylglycerol-36:5 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.72 0.49 -0.5 C0084
142 C0081 Digalactosyldiacylglycerol-36:2 - Digalactosyldiacylglycerol-36:2 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.72 0.51 -0.5 C0081
143 C0175 MST_2379.9 - - - 0.7 0.5 -0.48
144 C0085 Digalactosyldiacylglycerol-36:6 - Digalactosyldiacylglycerol-36:6 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.66 0.52 -0.5 C0085
145 C0208 Phosphatidylinositol-34:2 - Phosphatidylinositol-34:2 3-phosphoinositide biosynthesis,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
sphingolipid biosynthesis,
linoleate biosynthesis I,
cutin biosynthesis,
glycerophosphodiester degradation,
phosphate acquisition,
glutathione redox reactions I 		-0.66 0.48 -0.52 C0208
146 C0251 Sulfoquinovosyldiacylglycerol-36:6 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis -0.66 0.51 -0.51 C0251
147 C0117 Hydroxyproline (2S,4R)-Hydroxyproline 4-Hydroxy-L-proline protein precursor 0.64 0.44 -0.46 C0117
148 C0082 Digalactosyldiacylglycerol-36:3 - Digalactosyldiacylglycerol-36:3 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.64 0.48 -0.49 C0082
149 C0197 Phosphatidylcholine-36:1 - Phosphatidylcholine-36:1 choline biosynthesis III,
diacylglycerol biosynthesis,
phospholipases,
triacylglycerol biosynthesis,
linoleate biosynthesis I,
phosphatidylcholine biosynthesis III,
glutathione redox reactions I 		-0.63 0.48 -0.52 C0197