AT3G03920 : -
Query Information
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AGICode AT3G03920
Description H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G03920 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 1 0.32 -0.31
2 AT2G37990 ribosome biogenesis regulatory protein (RRS1) family
protein		 0.89 0.31 -0.35
3 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 0.88 0.33 -0.34
4 AT1G52930 Ribosomal RNA processing Brix domain protein 0.87 0.32 -0.3
5 AT3G44750 histone deacetylase 3 ATHD2A, HISTONE DEACETYLASE 2A,
histone deacetylase 3, HDT1		 0.87 0.34 -0.31
6 AT4G12600 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.87 0.3 -0.33
7 AT3G20050 T-complex protein 1 alpha subunit T-complex protein 1 alpha subunit,
T-complex protein 1 alpha subunit		 0.86 0.31 -0.3
8 AT1G25260 Ribosomal protein L10 family protein 0.86 0.34 -0.33
9 AT5G22440 Ribosomal protein L1p/L10e family 0.86 0.32 -0.31
10 AT1G02870 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Ribosome biogenesis protein Nop16
(InterPro:IPR019002); Has 104 Blast hits to 104 proteins in
57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 0.86 0.31 -0.28
11 AT5G50810 translocase inner membrane subunit 8 translocase inner membrane subunit
8		 0.86 0.3 -0.3
12 AT4G25630 fibrillarin 2 ATFIB2, fibrillarin 2 0.86 0.31 -0.31
13 AT2G44120 Ribosomal protein L30/L7 family protein 0.85 0.31 -0.33
14 AT4G01560 Ribosomal RNA processing Brix domain protein maternal effect embryo arrest 49 0.85 0.3 -0.32
15 AT2G44860 Ribosomal protein L24e family protein 0.85 0.33 -0.32
16 AT3G58700 Ribosomal L5P family protein 0.85 0.29 -0.33
17 AT4G20440 small nuclear ribonucleoprotein associated protein B small nuclear ribonucleoprotein
associated protein B		 0.85 0.31 -0.29
18 AT3G62940 Cysteine proteinases superfamily protein 0.85 0.32 -0.29
19 AT3G12390 Nascent polypeptide-associated complex (NAC), alpha subunit
family protein		 0.85 0.32 -0.31
20 AT4G39300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.84 0.3 -0.31
21 AT1G74560 NAP1-related protein 1 NAP1-related protein 1 0.84 0.31 -0.3
22 AT3G51800 metallopeptidase M24 family protein A. THALIANA ERBB-3 BINDING PROTEIN
1, ATG2, ERBB-3 BINDING PROTEIN 1		 0.84 0.33 -0.3
23 AT3G16780 Ribosomal protein L19e family protein 0.84 0.3 -0.34
24 AT4G10450 Ribosomal protein L6 family 0.84 0.32 -0.3
25 AT5G06360 Ribosomal protein S8e family protein 0.84 0.3 -0.32
26 AT5G08180 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.84 0.3 -0.3
27 AT5G41520 RNA binding Plectin/S10 domain-containing protein 0.84 0.32 -0.31
28 AT2G39390 Ribosomal L29 family protein 0.84 0.32 -0.31
29 AT5G10360 Ribosomal protein S6e embryo defective 3010, Ribosomal
protein small subunit 6b		 0.84 0.34 -0.3
30 AT5G22650 histone deacetylase 2B ARABIDOPSIS HISTONE DEACETYLASE 2,
ATHD2B, HISTONE DEACETYLASE 2,
histone deacetylase 2B, HDA4,
HDT02, HDT2		 0.84 0.31 -0.31
31 AT3G56070 rotamase cyclophilin 2 rotamase cyclophilin 2 0.83 0.31 -0.34
32 AT3G23830 glycine-rich RNA-binding protein 4 AtGRP4, GR-RBP4, glycine-rich
RNA-binding protein 4		 0.83 0.31 -0.33
33 AT2G25210 Ribosomal protein L39 family protein 0.83 0.33 -0.33
34 AT2G31410 unknown protein; Has 1719 Blast hits to 1091 proteins in
184 species: Archae - 5; Bacteria - 24; Metazoa - 559;
Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes -
769 (source: NCBI BLink).		 0.83 0.29 -0.32
35 AT1G54690 gamma histone variant H2AX GAMMA H2AX, gamma histone variant
H2AX, H2AXB, histone H2A 3		 0.83 0.33 -0.31
36 AT5G52470 fibrillarin 1 ATFBR1, ATFIB1, FIBRILLARIN 1,
fibrillarin 1,
SKP1/ASK1-INTERACTING PROTEIN		 0.83 0.32 -0.31
37 AT4G31120 SHK1 binding protein 1 ATPRMT5, PROTEIN ARGININE
METHYLTRANSFERASE 5, SHK1 binding
protein 1		 0.83 0.32 -0.34
38 AT5G62440 Protein of unknown function (DUF3223) 0.83 0.32 -0.3
39 AT3G27280 prohibitin 4 prohibitin 4, prohibitin 4 0.82 0.32 -0.31
40 AT3G57290 eukaryotic translation initiation factor 3E ATEIF3E-1, ATINT6, eukaryotic
translation initiation factor 3E,
INT-6, INT6, TIF3E1		 0.82 0.32 -0.31
41 AT5G02050 Mitochondrial glycoprotein family protein 0.82 0.31 -0.31
42 AT5G16070 TCP-1/cpn60 chaperonin family protein 0.82 0.31 -0.32
43 AT1G31660 CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955);
Has 475 Blast hits to 467 proteins in 210 species: Archae -
0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55;
Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).		 0.82 0.31 -0.3
44 AT4G20020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G44780.1); Has 28928 Blast
hits to 16023 proteins in 1033 species: Archae - 4;
Bacteria - 4155; Metazoa - 15463; Fungi - 2938; Plants -
3091; Viruses - 205; Other Eukaryotes - 3072 (source: NCBI
BLink).		 0.82 0.31 -0.32
45 AT1G56110 homolog of nucleolar protein NOP56 homolog of nucleolar protein NOP56 0.81 0.33 -0.32
46 AT2G36160 Ribosomal protein S11 family protein 0.81 0.31 -0.32
47 AT4G23620 Ribosomal protein L25/Gln-tRNA synthetase,
anti-codon-binding domain		 0.81 0.3 -0.3
48 AT1G74270 Ribosomal protein L35Ae family protein 0.81 0.29 -0.3
49 AT3G05810 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: IGR protein
motif (InterPro:IPR019083); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G26800.1); Has
62 Blast hits to 62 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.81 0.31 -0.32
50 AT1G28395 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast
hits to 89 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.81 0.3 -0.32
51 AT3G11400 eukaryotic translation initiation factor 3G1 ATEIF3G1, eukaryotic translation
initiation factor 3G1		 0.81 0.3 -0.32
52 AT1G60770 Tetratricopeptide repeat (TPR)-like superfamily protein 0.81 0.32 -0.33
53 AT3G46560 Tim10/DDP family zinc finger protein embryo defective 2474, TIM9 0.81 0.33 -0.33
54 AT4G30930 Ribosomal protein L21 NUCLEAR FUSION DEFECTIVE 1 0.81 0.31 -0.31
55 AT4G02220 zinc finger (MYND type) family protein / programmed cell
death 2 C-terminal domain-containing protein		 0.8 0.3 -0.29
56 AT5G23050 acyl-activating enzyme 17 acyl-activating enzyme 17 -0.8 0.33 -0.32
57 AT3G04230 Ribosomal protein S5 domain 2-like superfamily protein 0.8 0.33 -0.32
58 AT2G29540 RNApolymerase 14 kDa subunit ATRPAC14, RNApolymerase 14 kDa
subunit, RNApolymerase 14 kDa
subunit		 0.8 0.34 -0.32
59 AT3G52580 Ribosomal protein S11 family protein 0.8 0.29 -0.3
60 AT5G23900 Ribosomal protein L13e family protein 0.8 0.3 -0.31
61 AT1G80270 PENTATRICOPEPTIDE REPEAT 596 PENTATRICOPEPTIDE REPEAT 596 0.8 0.31 -0.33
62 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.8 0.3 -0.32
63 AT5G19300 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding,
OB-fold-like (InterPro:IPR016027), Protein of unknown
function DUF171 (InterPro:IPR003750); Has 3649 Blast hits
to 1964 proteins in 291 species: Archae - 113; Bacteria -
121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses -
4; Other Eukaryotes - 1703 (source: NCBI BLink).		 0.8 0.3 -0.3
64 AT4G02230 Ribosomal protein L19e family protein 0.8 0.33 -0.3
65 AT2G47640 Small nuclear ribonucleoprotein family protein 0.8 0.29 -0.3
66 AT1G49600 RNA-binding protein 47A RNA-binding protein 47A,
RNA-binding protein 47A		 0.8 0.29 -0.32
67 AT5G20890 TCP-1/cpn60 chaperonin family protein 0.8 0.33 -0.31
68 AT5G57350 H(+)-ATPase 3 H(+)-ATPase 3, ARABIDOPSIS
THALIANA ARABIDOPSIS H(+)-ATPASE,
H(+)-ATPase 3		 -0.8 0.34 -0.31
69 AT3G06700 Ribosomal L29e protein family 0.8 0.32 -0.31
70 AT5G19320 RAN GTPase activating protein 2 RAN GTPase activating protein 2 0.79 0.32 -0.32
71 AT5G20920 eukaryotic translation initiation factor 2 beta subunit eukaryotic translation initiation
factor 2 beta subunit, embryo
defective 1401		 0.79 0.33 -0.3
72 AT3G49180 Transducin/WD40 repeat-like superfamily protein ROOT INITIATION DEFECTIVE 3 0.79 0.31 -0.32
73 AT1G04870 protein arginine methyltransferase 10 ATPRMT10, protein arginine
methyltransferase 10		 0.79 0.32 -0.34
74 AT1G15420 CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12
(InterPro:IPR007148); Has 764 Blast hits to 656 proteins in
193 species: Archae - 0; Bacteria - 42; Metazoa - 237;
Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes -
223 (source: NCBI BLink).		 0.79 0.32 -0.32
75 AT5G04600 RNA-binding (RRM/RBD/RNP motifs) family protein 0.79 0.32 -0.31
76 AT5G02450 Ribosomal protein L36e family protein 0.79 0.31 -0.32
77 AT1G72730 DEA(D/H)-box RNA helicase family protein 0.79 0.31 -0.3
78 AT3G01790 Ribosomal protein L13 family protein 0.79 0.35 -0.3
79 AT1G13090 cytochrome P450, family 71, subfamily B, polypeptide 28 cytochrome P450, family 71,
subfamily B, polypeptide 28		 -0.78 0.35 -0.32
80 AT3G26580 Tetratricopeptide repeat (TPR)-like superfamily protein -0.76 0.28 -0.32
81 AT5G64900 precursor of peptide 1 ARABIDOPSIS THALIANA PEPTIDE 1,
PEPTIDE 1, precursor of peptide 1		 -0.75 0.32 -0.3
82 AT1G03380 homolog of yeast autophagy 18 (ATG18) G homolog of yeast autophagy 18
(ATG18) G, homolog of yeast
autophagy 18 (ATG18) G		 -0.75 0.32 -0.33
83 AT1G70160 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G27020.1); Has 108 Blast hits to 108 proteins in
20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 89; Viruses - 0; Other Eukaryotes - 19 (source:
NCBI BLink).		 -0.74 0.33 -0.32
84 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5		 -0.74 0.31 -0.32
85 AT1G30500 nuclear factor Y, subunit A7 nuclear factor Y, subunit A7 -0.74 0.32 -0.3
86 AT1G19650 Sec14p-like phosphatidylinositol transfer family protein -0.73 0.34 -0.31
87 AT1G62540 flavin-monooxygenase glucosinolate S-oxygenase 2 flavin-monooxygenase glucosinolate
S-oxygenase 2		 -0.73 0.31 -0.32
88 AT3G13040 myb-like HTH transcriptional regulator family protein -0.73 0.31 -0.31
89 AT1G24070 cellulose synthase-like A10 cellulose synthase-like A10,
CELLULOSE SYNTHASE LIKE A10,
cellulose synthase-like A10		 -0.73 0.31 -0.31
90 AT3G49580 response to low sulfur 1 RESPONSE TO LOW SULFUR 1 -0.72 0.34 -0.33
91 AT1G31550 GDSL-like Lipase/Acylhydrolase superfamily protein -0.72 0.32 -0.33
92 AT3G23610 dual specificity protein phosphatase 1 dual specificity protein
phosphatase 1		 -0.72 0.3 -0.32
93 AT4G19840 phloem protein 2-A1 phloem protein 2-A1, phloem
protein 2-A1, phloem protein 2-A1		 -0.72 0.3 -0.31
94 AT1G04770 Tetratricopeptide repeat (TPR)-like superfamily protein -0.71 0.33 -0.31
95 AT2G35060 K+ uptake permease 11 K+ uptake permease 11 -0.71 0.28 -0.33
96 AT4G22200 potassium transport 2/3 AKT2, potassium transport 2/3,
AKT3, potassium transport 2/3		 -0.71 0.32 -0.32
97 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.71 0.3 -0.3
98 AT4G15440 hydroperoxide lyase 1 CYP74B2, hydroperoxide lyase 1 -0.71 0.33 -0.3
99 AT3G56050 Protein kinase family protein -0.7 0.3 -0.31
100 AT5G48850 Tetratricopeptide repeat (TPR)-like superfamily protein SULPHUR DEFICIENCY-INDUCED 1 -0.7 0.32 -0.32
101 AT2G40435 BEST Arabidopsis thaliana protein match is: transcription
regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289
proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.7 0.32 -0.34
102 AT4G03200 catalytics -0.7 0.32 -0.33
103 AT3G02050 K+ uptake transporter 3 ARABIDOPSIS THALIANA POTASSIUM
TRANSPORTER 4, ATKUP3, K+ uptake
transporter 3		 -0.69 0.29 -0.34
104 AT1G71480 Nuclear transport factor 2 (NTF2) family protein -0.69 0.3 -0.32
105 AT4G39190 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G21560.1); Has 5536 Blast hits
to 3562 proteins in 401 species: Archae - 12; Bacteria -
497; Metazoa - 1363; Fungi - 374; Plants - 149; Viruses -
22; Other Eukaryotes - 3119 (source: NCBI BLink).		 -0.69 0.33 -0.31
106 AT4G15475 F-box/RNI-like superfamily protein -0.69 0.3 -0.28
107 AT3G21750 UDP-glucosyl transferase 71B1 UDP-glucosyl transferase 71B1 -0.69 0.31 -0.32
108 AT3G17700 cyclic nucleotide-binding transporter 1 CYCLIC NUCLEOTIDE-GATED CHANNEL
20, cyclic nucleotide-binding
transporter 1, CNGC20		 -0.68 0.31 -0.34
109 AT2G20340 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.68 0.3 -0.31
110 AT2G23430 Cyclin-dependent kinase inhibitor family protein ICK1, KIP-RELATED PROTEIN 1 -0.68 0.32 -0.32
111 AT3G10420 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 SEEDLING PLASTID DEVELOPMENT 1 -0.67 0.32 -0.33
112 AT1G56710 Pectin lyase-like superfamily protein -0.67 0.32 -0.33
113 AT3G03870 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G18130.1); Has 41 Blast hits
to 41 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.34 -0.33
114 AT4G23600 Tyrosine transaminase family protein CORONATINE INDUCED 1, JASMONIC
ACID RESPONSIVE 2		 -0.67 0.31 -0.32
115 AT1G68570 Major facilitator superfamily protein -0.67 0.31 -0.33
116 AT5G57360 Galactose oxidase/kelch repeat superfamily protein ADAGIO 1, FKF1-LIKE PROTEIN 2, LOV
KELCH PROTEIN 1, ZEITLUPE		 -0.67 0.34 -0.31
117 AT4G23670 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.66 0.32 -0.32
118 AT1G72650 TRF-like 6 TRF-like 6 -0.66 0.31 -0.32
119 AT5G62130 Per1-like family protein -0.66 0.33 -0.32
120 AT2G14080 Disease resistance protein (TIR-NBS-LRR class) family -0.66 0.33 -0.32
121 AT1G51340 MATE efflux family protein -0.66 0.32 -0.31
122 AT5G42470 CONTAINS InterPro DOMAIN/s: Brain/reproductive
organ-expressed protein (InterPro:IPR010358); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).		 -0.66 0.29 -0.34
123 AT5G52880 F-box family protein -0.66 0.28 -0.32
124 AT4G13260 Flavin-binding monooxygenase family protein YUCCA2 -0.66 0.33 -0.32
125 AT4G33700 CBS domain-containing protein with a domain of unknown
function (DUF21)		 -0.66 0.31 -0.35
126 AT5G02620 ankyrin-like1 ankyrin-like1, ATANK1 -0.66 0.32 -0.3
127 AT1G36370 serine hydroxymethyltransferase 7 serine hydroxymethyltransferase 7 -0.66 0.32 -0.3