AT1G12400 : -
Query Information
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AGICode AT1G12400
Description Nucleotide excision repair, TFIIH, subunit TTDA
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G12400 Nucleotide excision repair, TFIIH, subunit TTDA 1 0.31 -0.33
2 AT2G16640 multimeric translocon complex in the outer envelope
membrane 132		 MULTIMERIC TRANSLOCON COMPLEX IN
THE OUTER ENVELOPE MEMBRANE 132,
multimeric translocon complex in
the outer envelope membrane 132		 -0.69 0.32 -0.32
3 AT4G00240 phospholipase D beta 2 phospholipase D beta 2 0.68 0.32 -0.3
4 AT1G52880 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 18, ATNAM, NO APICAL
MERISTEM, NAC-REGULATED SEED
MORPHOLOGY 2		 0.68 0.31 -0.34
5 AT1G61480 S-locus lectin protein kinase family protein 0.66 0.3 -0.33
6 AT1G20350 translocase inner membrane subunit 17-1 translocase inner membrane subunit
17-1, translocase inner membrane
subunit 17-1		 0.65 0.33 -0.31
7 AT2G26240 Transmembrane proteins 14C 0.64 0.33 -0.31
8 AT4G00955 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana
protein match is: Protein kinase superfamily protein
(TAIR:AT2G23450.1); Has 94 Blast hits to 88 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0;
Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.64 0.33 -0.31
9 AT3G28940 AIG2-like (avirulence induced gene) family protein 0.63 0.31 -0.33
10 AT1G08070 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 3102, ORGANELLE
TRANSCRIPT PROCESSING 82		 -0.63 0.33 -0.32
11 AT4G17660 Protein kinase superfamily protein 0.61 0.3 -0.31
12 AT5G04590 sulfite reductase sulfite reductase 0.61 0.33 -0.33
13 AT1G13950 eukaryotic elongation factor 5A-1 EUKARYOTIC ELONGATION FACTOR 5A-1,
EIF-5A, EUKARYOTIC ELONGATION
FACTOR 5A, eukaryotic elongation
factor 5A-1		 0.6 0.31 -0.32
14 AT1G11330 S-locus lectin protein kinase family protein 0.6 0.31 -0.3
15 AT2G46310 cytokinin response factor 5 cytokinin response factor 5 -0.59 0.3 -0.31
16 AT3G45530 Cysteine/Histidine-rich C1 domain family protein 0.59 0.33 -0.31
17 AT1G75310 auxin-like 1 protein auxilin-like 1 -0.59 0.31 -0.33
18 AT5G53550 YELLOW STRIPE like 3 YELLOW STRIPE LIKE 3, YELLOW
STRIPE like 3		 0.59 0.31 -0.32
19 AT2G36400 growth-regulating factor 3 growth-regulating factor 3,
growth-regulating factor 3		 -0.58 0.32 -0.32
20 AT3G21650 Protein phosphatase 2A regulatory B subunit family protein -0.58 0.35 -0.33
21 AT3G17750 Protein kinase superfamily protein -0.56 0.29 -0.32
22 AT2G02100 low-molecular-weight cysteine-rich 69 low-molecular-weight cysteine-rich
69, PDF2.2		 -0.56 0.29 -0.31
23 AT1G15940 Tudor/PWWP/MBT superfamily protein -0.56 0.31 -0.31
24 AT3G61580 Fatty acid/sphingolipid desaturase AtSLD1, sphingoid LCB desaturase 1 -0.56 0.33 -0.3
25 AT5G55810 nicotinate/nicotinamide mononucleotide adenyltransferase nicotinate/nicotinamide
mononucleotide adenyltransferase,
nicotinate/nicotinamide
mononucleotide adenyltransferase		 0.56 0.31 -0.31
26 AT3G50480 homolog of RPW8 4 homolog of RPW8 4 0.55 0.34 -0.31
27 AT4G09150 T-complex protein 11 -0.55 0.3 -0.32
28 AT4G29990 Leucine-rich repeat transmembrane protein kinase protein -0.55 0.31 -0.32
29 AT3G47620 TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 TEOSINTE BRANCHED, cycloidea and
PCF (TCP) 14, TEOSINTE BRANCHED,
cycloidea and PCF (TCP) 14		 -0.55 0.29 -0.33
30 AT2G04720 pseudogene, GTP-binding protein -related, similar to
GTP-binding protein GI:6624302 from (Carica papaya); blastp
match of 60% identity and 5.0e-31 P-value to
GP|6624302|dbj|BAA88497.1||AB035919 small GTP-binding
protein {Carica papaya}		 -0.55 0.32 -0.33
31 AT1G63530 BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT1G63540.1); Has 10212 Blast hits to 4024 proteins
in 434 species: Archae - 1; Bacteria - 1259; Metazoa -
3608; Fungi - 2247; Plants - 291; Viruses - 90; Other
Eukaryotes - 2716 (source: NCBI BLink).		 0.54 0.31 -0.33
32 AT1G72040 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.54 0.31 -0.33
33 AT4G39380 BEST Arabidopsis thaliana protein match is: TSL-kinase
interacting protein 1 (TAIR:AT2G36960.3); Has 80 Blast hits
to 74 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.54 0.31 -0.31
34 AT5G03470 Protein phosphatase 2A regulatory B subunit family protein ATB' ALPHA -0.54 0.29 -0.32
35 AT1G33660 peroxidase family protein 0.54 0.29 -0.31
36 AT1G54290 Translation initiation factor SUI1 family protein 0.54 0.31 -0.3
37 AT3G21620 ERD (early-responsive to dehydration stress) family protein 0.53 0.33 -0.3
38 AT3G11490 rac GTPase activating protein -0.53 0.31 -0.33
39 AT5G46070 Guanylate-binding family protein -0.53 0.31 -0.33
40 AT1G69910 Protein kinase superfamily protein -0.52 0.3 -0.32
41 AT5G10740 Protein phosphatase 2C family protein 0.52 0.33 -0.31
42 AT1G67600 Acid phosphatase/vanadium-dependent haloperoxidase-related
protein		 0.52 0.31 -0.32
43 AT4G37260 myb domain protein 73 ATMYB73, myb domain protein 73 -0.52 0.31 -0.31
44 AT3G43690 transposable element gene -0.52 0.33 -0.3
45 AT2G35430 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.52 0.31 -0.31
46 AT2G03180 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.52 0.34 -0.32
47 AT1G53400 Ubiquitin domain-containing protein -0.52 0.3 -0.34
48 AT4G32020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G25250.1); Has 65 Blast
hits to 65 proteins in 19 species: Archae - 0; Bacteria -
0; Metazoa - 3; Fungi - 8; Plants - 54; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.51 0.31 -0.33
49 AT5G51810 gibberellin 20 oxidase 2 AT2353, ATGA20OX2, gibberellin 20
oxidase 2		 -0.51 0.31 -0.32
50 AT5G37570 Pentatricopeptide repeat (PPR-like) superfamily protein -0.51 0.32 -0.3
51 AT3G45730 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.51 0.32 -0.31
52 AT1G67940 non-intrinsic ABC protein 3 ATP-binding cassette I17,
non-intrinsic ABC protein 3,
AtSTAR1, ARABIDOPSIS THALIANA
NON-INTRINSIC ABC PROTEIN 3,
non-intrinsic ABC protein 3		 0.51 0.29 -0.33
53 AT2G34090 maternal effect embryo arrest 18 maternal effect embryo arrest 18 -0.5 0.3 -0.33
54 AT5G20610 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G26160.1); Has 918 Blast hits
to 759 proteins in 180 species: Archae - 6; Bacteria - 105;
Metazoa - 264; Fungi - 89; Plants - 167; Viruses - 5; Other
Eukaryotes - 282 (source: NCBI BLink).		 -0.5 0.33 -0.3
55 AT1G72050 transcription factor IIIA transcription factor IIIA -0.5 0.31 -0.31
56 AT4G21060 Galactosyltransferase family protein -0.5 0.31 -0.31
57 AT1G65380 Leucine-rich repeat (LRR) family protein Receptor Like Protein 10, clavata
2		 -0.49 0.32 -0.32
58 AT1G77390 CYCLIN A1;2 CYCLIN A1, CYCLIN A1;2, DYP, TARDY
ASYNCHRONOUS MEIOSIS		 -0.49 0.31 -0.3
59 AT1G55180 phospholipase D alpha 4 PLDALPHA4, phospholipase D alpha 4 -0.49 0.33 -0.31
60 AT1G29600 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.49 0.3 -0.3
61 AT3G21290 dentin sialophosphoprotein-related -0.49 0.32 -0.32
62 AT3G52430 alpha/beta-Hydrolases superfamily protein ARABIDOPSIS PHYTOALEXIN DEFICIENT
4, PHYTOALEXIN DEFICIENT 4		 0.49 0.3 -0.32
63 AT1G08050 Zinc finger (C3HC4-type RING finger) family protein 0.49 0.31 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
64 C0093 Galactinol dihydrate - Galactinol galactosylcyclitol biosynthesis,
stachyose biosynthesis,
ajugose biosynthesis I (galactinol-dependent) 		-0.77 0.43 -0.43 C0093
65 C0198 Phosphatidylethanolamine-34:0 - - - 0.76 0.48 -0.46
66 C0248 Sulfoquinovosyldiacylglycerol-36:3 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis -0.75 0.48 -0.5 C0248
67 C0172 MST_2214.3 - - - -0.69 0.47 -0.44
68 C0176 MST_2406.9 - - - -0.68 0.46 -0.45
69 C0082 Digalactosyldiacylglycerol-36:3 - Digalactosyldiacylglycerol-36:3 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.67 0.51 -0.52 C0082
70 C0173 MST_2301.7 - - - -0.66 0.45 -0.49
71 C0100 Glucose-6-phosphate D-(+)-Glucose-6-phosphate D-Glucose-6-phosphate starch biosyntehsis -0.62 0.3 -0.3 C0100
72 C0229 Robinin - - flavone biosynthesis -0.58 0.46 -0.42