AT1G28060 : -
Query Information
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AGICode AT1G28060
Description Pre-mRNA-splicing factor 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G28060 Pre-mRNA-splicing factor 3 1 0.32 -0.32
2 AT2G25970 KH domain-containing protein 0.85 0.33 -0.31
3 AT4G29510 arginine methyltransferase 11 ARABIDOPSIS THALIANA ARGININE
METHYLTRANSFERASE 11, ARABIDOPSIS
THALIANA PROTEIN ARGININE
METHYLTRANSFERASE 1B, arginine
methyltransferase 11, PROTEIN
ARGININE METHYLTRANSFERASE 1B		 0.84 0.32 -0.32
4 AT5G05210 Surfeit locus protein 6 0.82 0.32 -0.32
5 AT2G21440 RNA-binding (RRM/RBD/RNP motifs) family protein 0.82 0.31 -0.3
6 AT1G53035 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.81 0.3 -0.31
7 AT4G34910 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.8 0.31 -0.31
8 AT3G22670 Pentatricopeptide repeat (PPR) superfamily protein 0.8 0.31 -0.32
9 AT1G03530 nuclear assembly factor 1 ATNAF1, nuclear assembly factor 1 0.79 0.33 -0.31
10 AT4G10760 mRNAadenosine methylase EMBRYO DEFECTIVE 1706,
mRNAadenosine methylase		 0.79 0.33 -0.31
11 AT4G38580 farnesylated protein 6 farnesylated protein 6,
farnesylated protein 6, HEAVY
METAL ASSOCIATED ISOPRENYLATED
PLANT PROTEIN 26		 0.79 0.31 -0.31
12 AT2G40650 PRP38 family protein 0.79 0.32 -0.32
13 AT3G15760 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G52565.1); Has 42 Blast hits to 42 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.79 0.31 -0.33
14 AT3G13150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.78 0.31 -0.34
15 AT3G54540 general control non-repressible 4 ATP-binding cassette F4, general
control non-repressible 4, general
control non-repressible 4		 0.78 0.31 -0.31
16 AT2G33730 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.77 0.32 -0.3
17 AT5G46920 Intron maturase, type II family protein 0.77 0.32 -0.32
18 AT5G52820 WD-40 repeat family protein / notchless protein, putative 0.77 0.32 -0.33
19 AT5G48250 B-box type zinc finger protein with CCT domain 0.76 0.31 -0.33
20 AT4G33960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G15830.1); Has 32 Blast hits to 32 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.76 0.31 -0.3
21 AT3G50670 U1 small nuclear ribonucleoprotein-70K U1 small nuclear
ribonucleoprotein-70K, U1SNRNP		 0.76 0.3 -0.3
22 AT2G28720 Histone superfamily protein 0.76 0.32 -0.31
23 AT2G13540 ARM repeat superfamily protein ABA HYPERSENSITIVE 1, ATCBP80,
CAP-BINDING PROTEIN 80, ENSALADA		 0.76 0.31 -0.31
24 AT5G56740 histone acetyltransferase of the GNAT family 2 HAC07, HAC7, HAG02, histone
acetyltransferase of the GNAT
family 2		 0.76 0.3 -0.31
25 AT5G12200 pyrimidine 2 pyrimidine 2 -0.75 0.33 -0.33
26 AT5G64420 DNA polymerase V family 0.75 0.34 -0.29
27 AT1G51600 ZIM-LIKE 2 GATA TRANSCRIPTION FACTOR 28,
TIFY2A, ZIM-LIKE 2		 0.75 0.31 -0.32
28 AT1G08610 Pentatricopeptide repeat (PPR) superfamily protein 0.75 0.31 -0.31
29 AT1G20300 Pentatricopeptide repeat (PPR) superfamily protein 0.75 0.31 -0.3
30 AT2G12550 ubiquitin-associated (UBA)/TS-N domain-containing protein homolog of human NUB1 0.74 0.3 -0.31
31 AT5G10630 Translation elongation factor EF1A/initiation factor
IF2gamma family protein		 0.74 0.32 -0.3
32 AT1G71850 Ubiquitin carboxyl-terminal hydrolase family protein 0.74 0.31 -0.29
33 AT3G08620 RNA-binding KH domain-containing protein 0.74 0.32 -0.35
34 AT2G17510 ribonuclease II family protein EMBRYO DEFECTIVE 2763 0.74 0.3 -0.31
35 AT3G16230 Predicted eukaryotic LigT -0.74 0.3 -0.32
36 AT3G17830 Molecular chaperone Hsp40/DnaJ family protein 0.74 0.32 -0.29
37 AT5G41260 Protein kinase protein with tetratricopeptide repeat domain 0.74 0.31 -0.32
38 AT5G18630 alpha/beta-Hydrolases superfamily protein -0.74 0.31 -0.31
39 AT4G31880 LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Tudor/PWWP/MBT
superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast
hits to 70781 proteins in 2973 species: Archae - 289;
Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants -
6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI
BLink).		 0.74 0.33 -0.31
40 AT3G16910 acyl-activating enzyme 7 acyl-activating enzyme 7, ACETATE
NON-UTILIZING 1		 -0.73 0.3 -0.32
41 AT1G30290 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.32 -0.31
42 AT1G17665 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 11 growth stages; Has 149 Blast hits to
146 proteins in 39 species: Archae - 0; Bacteria - 4;
Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other
Eukaryotes - 89 (source: NCBI BLink).		 0.73 0.34 -0.31
43 AT1G02330 CONTAINS InterPro DOMAIN/s: Hepatocellular
carcinoma-associated antigen 59 (InterPro:IPR010756); Has
1239 Blast hits to 998 proteins in 204 species: Archae - 4;
Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87;
Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink).		 0.73 0.32 -0.32
44 AT3G02400 SMAD/FHA domain-containing protein 0.73 0.32 -0.31
45 AT5G58130 RNA-binding (RRM/RBD/RNP motifs) family protein REPRESSOR OF SILENCING 3 0.73 0.3 -0.36
46 AT3G04610 RNA-binding KH domain-containing protein flowering locus KH domain 0.73 0.32 -0.3
47 AT1G33780 Protein of unknown function (DUF179) -0.73 0.32 -0.3
48 AT3G53500 RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain		 arginine/serine-rich zinc
knuckle-containing protein 32,
arginine/serine-rich zinc
knuckle-containing protein 32,
arginine/serine-rich zinc
knuckle-containing protein 32		 0.73 0.31 -0.29
49 AT5G16780 SART-1 family DEFECTIVELY ORGANIZED TRIBUTARIES
2, MERISTEM-DEFECTIVE		 0.72 0.3 -0.35
50 AT1G32860 Glycosyl hydrolase superfamily protein 0.72 0.31 -0.31
51 AT5G02820 Spo11/DNA topoisomerase VI, subunit A protein BRASSINOSTEROID INSENSITIVE 5,
ROOT HAIRLESS 2		 0.72 0.3 -0.3
52 AT1G04860 ubiquitin-specific protease 2 ATUBP2, ubiquitin-specific
protease 2		 0.72 0.31 -0.31
53 AT5G28020 cysteine synthase D2 CYSTEINE SYNTHASE D2, cysteine
synthase D2		 -0.72 0.3 -0.33
54 AT1G20920 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.72 0.32 -0.31
55 AT5G37930 Protein with RING/U-box and TRAF-like domains -0.72 0.32 -0.31
56 AT5G62350 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.71 0.3 -0.32
57 AT5G27710 unknown protein; Has 49 Blast hits to 49 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.71 0.32 -0.35
58 AT1G04350 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.71 0.3 -0.31
59 AT2G21660 cold, circadian rhythm, and rna binding 2 GLYCINE RICH PROTEIN 7, cold,
circadian rhythm, and rna binding
2, GLYCINE-RICH RNA-BINDING
PROTEIN 7, GLYCINE-RICH
RNA-BINDING PROTEIN 7		 0.71 0.31 -0.31
60 AT1G16730 unknown protein 6 unknown protein 6 -0.71 0.3 -0.31
61 AT5G27350 Major facilitator superfamily protein SFP1 -0.71 0.32 -0.31
62 AT5G13270 Pentatricopeptide repeat (PPR) superfamily protein REQUIRED FOR ACCD RNA EDITING 1 0.71 0.29 -0.31
63 AT4G25500 arginine/serine-rich splicing factor 35 arginine/serine-rich splicing
factor 40, AT-SRP40, ARABIDOPSIS
THALIANA ARGININE/SERINE-RICH
SPLICING FACTOR 35, ATRSP40,
arginine/serine-rich splicing
factor 40, arginine/serine-rich
splicing factor 35		 0.71 0.31 -0.31
64 AT3G04470 Ankyrin repeat family protein 0.71 0.31 -0.3
65 AT1G09620 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA
ligases;nucleotide binding;ATP binding;aminoacyl-tRNA
ligases		 0.71 0.34 -0.33
66 AT2G44020 Mitochondrial transcription termination factor family
protein		 0.7 0.31 -0.33
67 AT2G31360 16:0delta9 desaturase 2 16:0delta9 desaturase 2,
16:0delta9 desaturase 2		 0.7 0.31 -0.32
68 AT1G22770 gigantea protein (GI) FB, GIGANTEA 0.7 0.28 -0.33
69 AT2G38770 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 EMBRYO DEFECTIVE 2765 0.7 0.32 -0.33
70 AT1G14650 SWAP (Suppressor-of-White-APricot)/surp domain-containing
protein / ubiquitin family protein		 0.7 0.3 -0.29
71 AT4G28480 DNAJ heat shock family protein 0.7 0.32 -0.31
72 AT3G06480 DEAD box RNA helicase family protein 0.7 0.32 -0.32
73 AT1G48560 unknown protein; Has 75 Blast hits to 71 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0;
Plants - 69; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.7 0.3 -0.33
74 AT2G03820 nonsense-mediated mRNA decay NMD3 family protein 0.7 0.33 -0.34
75 AT5G22330 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATTIP49A, RESISTANCE TO
PSEUDOMONAS SYRINGAE PV MACULICOLA
INTERACTOR 1		 0.69 0.33 -0.31
76 AT1G51610 Cation efflux family protein 0.69 0.33 -0.32
77 AT3G60910 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.69 0.31 -0.33
78 AT1G60560 SWIM zinc finger family protein 0.69 0.32 -0.3
79 AT1G48120 hydrolases;protein serine/threonine phosphatases 0.69 0.35 -0.32
80 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family -0.69 0.31 -0.31
81 AT3G18640 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.69 0.31 -0.32
82 AT3G63400 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.69 0.32 -0.31
83 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.69 0.31 -0.31
84 AT2G43980 inositol 1,3,4-trisphosphate 5/6-kinase 4 inositol 1,3,4-trisphosphate
5/6-kinase 4, inositol
1,3,4-trisphosphate 5/6-kinase 4		 -0.69 0.34 -0.28
85 AT2G16640 multimeric translocon complex in the outer envelope
membrane 132		 MULTIMERIC TRANSLOCON COMPLEX IN
THE OUTER ENVELOPE MEMBRANE 132,
multimeric translocon complex in
the outer envelope membrane 132		 0.69 0.3 -0.31
86 AT1G25320 Leucine-rich repeat protein kinase family protein 0.69 0.33 -0.3
87 AT5G47420 Tryptophan RNA-binding attenuator protein-like -0.68 0.33 -0.32
88 AT1G25375 Metallo-hydrolase/oxidoreductase superfamily protein -0.68 0.32 -0.32
89 AT2G36360 Galactose oxidase/kelch repeat superfamily protein -0.67 0.31 -0.32
90 AT1G05060 unknown protein; Has 34 Blast hits to 34 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.67 0.32 -0.33
91 AT4G20820 FAD-binding Berberine family protein -0.67 0.3 -0.32
92 AT3G11230 Yippee family putative zinc-binding protein -0.66 0.33 -0.33
93 AT3G01360 Family of unknown function (DUF716) -0.65 0.31 -0.29
94 AT4G04320 malonyl-CoA decarboxylase family protein -0.65 0.31 -0.32
95 AT3G19000 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.65 0.34 -0.3
96 AT1G78550 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.65 0.32 -0.31
97 AT5G42370 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.65 0.33 -0.3
98 AT5G13760 Plasma-membrane choline transporter family protein -0.65 0.29 -0.33
99 AT5G11910 alpha/beta-Hydrolases superfamily protein -0.64 0.3 -0.32
100 AT4G35750 SEC14 cytosolic factor family protein / phosphoglyceride
transfer family protein		 -0.64 0.33 -0.32
101 AT1G23130 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.64 0.3 -0.3
102 AT2G24762 glutamine dumper 4 glutamine dumper 4, glutamine
dumper 4		 -0.63 0.33 -0.31
103 AT3G59300 Pentatricopeptide repeat (PPR) superfamily protein -0.63 0.3 -0.32
104 AT5G45370 nodulin MtN21 /EamA-like transporter family protein -0.63 0.3 -0.33
105 AT5G55810 nicotinate/nicotinamide mononucleotide adenyltransferase nicotinate/nicotinamide
mononucleotide adenyltransferase,
nicotinate/nicotinamide
mononucleotide adenyltransferase		 -0.63 0.3 -0.31
106 AT3G16540 DegP protease 11 DegP protease 11 -0.62 0.33 -0.31
107 AT2G41120 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 10 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF309
(InterPro:IPR005500); Has 349 Blast hits to 349 proteins in
112 species: Archae - 2; Bacteria - 189; Metazoa - 0; Fungi
- 0; Plants - 31; Viruses - 0; Other Eukaryotes - 127
(source: NCBI BLink).		 -0.62 0.33 -0.32
108 AT4G16770 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.62 0.3 -0.3
109 AT5G56610 Phosphotyrosine protein phosphatases superfamily protein -0.61 0.32 -0.29
110 AT1G22460 O-fucosyltransferase family protein -0.61 0.32 -0.31
111 AT1G68440 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits
to 86 proteins in 29 species: Archae - 0; Bacteria - 6;
Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other
Eukaryotes - 18 (source: NCBI BLink).		 -0.61 0.32 -0.29
112 AT1G01490 Heavy metal transport/detoxification superfamily protein -0.61 0.31 -0.31
113 AT2G42490 Copper amine oxidase family protein -0.6 0.34 -0.31
114 AT2G01680 Ankyrin repeat family protein -0.59 0.32 -0.32
115 AT4G19045 Mob1/phocein family protein -0.59 0.31 -0.33
116 AT4G31330 Protein of unknown function, DUF599 -0.59 0.31 -0.32
117 AT2G47120 NAD(P)-binding Rossmann-fold superfamily protein -0.59 0.32 -0.31
118 AT5G04330 Cytochrome P450 superfamily protein -0.59 0.3 -0.33
119 AT1G43580 Sphingomyelin synthetase family protein -0.59 0.31 -0.3
120 AT5G09740 histone acetyltransferase of the MYST family 2 histone acetyltransferase of the
MYST family 2		 -0.58 0.3 -0.3
121 AT4G35220 Cyclase family protein -0.58 0.31 -0.34
122 AT4G08160 glycosyl hydrolase family 10 protein / carbohydrate-binding
domain-containing protein		 -0.58 0.31 -0.32
123 AT1G77660 Histone H3 K4-specific methyltransferase SET7/9 family
protein		 -0.58 0.34 -0.34
124 AT5G06280 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.58 0.33 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
125 C0033 4-(Methylsulfinyl)butylglucosinolate - 4-Methylsulfinylbutyl glucosinolate glucosinolate biosynthesis from dihomomethionine -0.62 0.44 -0.43 C0033