AT1G52380 : -
Query Information
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AGICode AT1G52380
Description NUP50 (Nucleoporin 50 kDa) protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G52380 NUP50 (Nucleoporin 50 kDa) protein 1 0.31 -0.32
2 AT3G20000 translocase of the outer mitochondrial membrane 40 translocase of the outer
mitochondrial membrane 40		 0.8 0.3 -0.31
3 AT2G34250 SecY protein transport family protein 0.8 0.34 -0.3
4 AT1G71780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; Has 34 Blast hits to 34
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.79 0.32 -0.31
5 AT3G13460 evolutionarily conserved C-terminal region 2 evolutionarily conserved
C-terminal region 2		 0.76 0.32 -0.33
6 AT4G39520 GTP-binding protein-related 0.76 0.31 -0.3
7 AT1G59620 Disease resistance protein (CC-NBS-LRR class) family CW9 -0.75 0.32 -0.31
8 AT1G25260 Ribosomal protein L10 family protein 0.75 0.32 -0.31
9 AT5G53770 Nucleotidyltransferase family protein 0.74 0.31 -0.32
10 AT5G60640 PDI-like 1-4 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 2, PDI-like
1-4, PROTEIN DISULFIDE ISOMERASE
2, PDI-like 1-4		 0.74 0.32 -0.31
11 AT5G63150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1713, mitochondria
(InterPro:IPR013177); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.73 0.33 -0.3
12 AT1G64550 general control non-repressible 3 ATP-binding cassette F3, AtABCF3,
AtGCN20, general control
non-repressible 3, general control
non-repressible 20, general
control non-repressible 3,
susceptible to
coronatine-deficient Pst DC3000 5		 0.73 0.32 -0.31
13 AT3G18940 clast3-related 0.73 0.33 -0.31
14 AT1G49540 elongator protein 2 Elongator subunit 2, elongator
protein 2		 0.73 0.33 -0.29
15 AT3G12600 nudix hydrolase homolog 16 nudix hydrolase homolog 16, nudix
hydrolase homolog 16		 0.73 0.32 -0.31
16 AT2G24500 Zinc finger protein 622 FZF 0.73 0.32 -0.31
17 AT5G38830 Cysteinyl-tRNA synthetase, class Ia family protein 0.73 0.33 -0.29
18 AT2G29530 Tim10/DDP family zinc finger protein TIM10 0.72 0.34 -0.33
19 AT5G05520 Outer membrane OMP85 family protein 0.72 0.34 -0.3
20 AT3G15640 Rubredoxin-like superfamily protein 0.72 0.33 -0.32
21 AT1G79550 phosphoglycerate kinase phosphoglycerate kinase 0.72 0.3 -0.32
22 AT5G47680 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA
(guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA
(guanine-N(1)-)-methyltransferase, metazoa
(InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase,
eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 AtTRM, tRNA modification 10 0.72 0.31 -0.33
23 AT4G23890 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287
proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa
- 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes
- 111 (source: NCBI BLink).		 CHLORORESPIRATORY REDUCTION 31,
NADH dehydrogenase-like complex S		 -0.72 0.32 -0.32
24 AT4G00090 Transducin/WD40 repeat-like superfamily protein 0.72 0.32 -0.34
25 AT2G23070 Protein kinase superfamily protein 0.72 0.31 -0.32
26 AT3G21140 Pyridoxamine 5'-phosphate oxidase family protein 0.72 0.32 -0.31
27 AT3G01790 Ribosomal protein L13 family protein 0.72 0.32 -0.32
28 AT1G73180 Eukaryotic translation initiation factor eIF2A family
protein		 0.71 0.31 -0.31
29 AT3G02420 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
membrane; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0121
(InterPro:IPR005344); Has 72 Blast hits to 71 proteins in
25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi -
2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source:
NCBI BLink).		 0.71 0.31 -0.33
30 AT4G12590 Protein of unknown function DUF106, transmembrane 0.71 0.32 -0.31
31 AT2G03120 signal peptide peptidase signal peptide peptidase, signal
peptide peptidase		 0.71 0.31 -0.3
32 AT5G10780 CONTAINS InterPro DOMAIN/s: Uncharacterised conserved
protein UCP017207, transmembrane protein 85
(InterPro:IPR016687), Protein of unknown function DUF1077
(InterPro:IPR009445); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.71 0.32 -0.31
33 AT5G47080 casein kinase II beta chain 1 casein kinase II beta chain 1 0.7 0.32 -0.32
34 AT2G36930 zinc finger (C2H2 type) family protein 0.7 0.31 -0.32
35 AT3G56400 WRKY DNA-binding protein 70 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 70, WRKY
DNA-binding protein 70		 -0.7 0.33 -0.33
36 AT1G69230 SPIRAL1-like2 SPIRAL1-like2 -0.7 0.32 -0.32
37 AT1G75660 5'-3' exoribonuclease 3 5'-3' EXORIBONUCLEASE 3, 5'-3'
exoribonuclease 3		 0.7 0.33 -0.32
38 AT2G01140 Aldolase superfamily protein PIGMENT DEFECTIVE 345 0.7 0.33 -0.3
39 AT5G26280 TRAF-like family protein 0.69 0.34 -0.33
40 AT1G71210 Pentatricopeptide repeat (PPR) superfamily protein 0.69 0.31 -0.31
41 AT1G03400 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.69 0.32 -0.32
42 AT4G26650 RNA-binding (RRM/RBD/RNP motifs) family protein 0.69 0.32 -0.33
43 AT1G19715 Mannose-binding lectin superfamily protein -0.68 0.31 -0.34
44 AT1G11410 S-locus lectin protein kinase family protein -0.68 0.33 -0.31
45 AT3G16310 mitotic phosphoprotein N' end (MPPN) family protein 0.68 0.32 -0.3
46 AT5G49210 unknown protein; Has 3675 Blast hits to 2315 proteins in
312 species: Archae - 2; Bacteria - 342; Metazoa - 1190;
Fungi - 281; Plants - 114; Viruses - 4; Other Eukaryotes -
1742 (source: NCBI BLink).		 0.68 0.33 -0.3
47 AT2G26590 regulatory particle non-ATPase 13 regulatory particle non-ATPase 13 0.68 0.34 -0.3
48 AT4G27500 proton pump interactor 1 proton pump interactor 1 0.68 0.31 -0.3
49 AT1G50370 Calcineurin-like metallo-phosphoesterase superfamily
protein		 AtFYPP1, flower- specific,
phytochrome-associated protein
phosphatase 1		 0.68 0.32 -0.31
50 AT4G14400 ankyrin repeat family protein ACCELERATED CELL DEATH 6 -0.67 0.33 -0.32
51 AT2G21185 unknown protein; Has 9 Blast hits to 9 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.67 0.32 -0.31
52 AT3G02710 ARM repeat superfamily protein 0.67 0.32 -0.33
53 AT1G19835 Plant protein of unknown function (DUF869) -0.67 0.33 -0.3
54 AT1G22570 Major facilitator superfamily protein 0.67 0.31 -0.35
55 AT3G56080 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.67 0.31 -0.33
56 AT5G23250 Succinyl-CoA ligase, alpha subunit 0.67 0.33 -0.29
57 AT2G16460 Protein of unknown function (DUF1640) 0.67 0.31 -0.3
58 AT4G14660 RNA polymerase Rpb7-like, N-terminal domain NRPE7 0.66 0.31 -0.34
59 AT2G20060 Ribosomal protein L4/L1 family 0.66 0.32 -0.32
60 AT5G13850 nascent polypeptide-associated complex subunit alpha-like
protein 3		 nascent polypeptide-associated
complex subunit alpha-like protein
3		 0.66 0.31 -0.33
61 AT5G45620 Proteasome component (PCI) domain protein 0.66 0.32 -0.32
62 AT4G29840 Pyridoxal-5'-phosphate-dependent enzyme family protein METHIONINE OVER-ACCUMULATOR 2,
THREONINE SYNTHASE		 0.65 0.31 -0.31
63 AT3G57650 lysophosphatidyl acyltransferase 2 lysophosphatidyl acyltransferase 2 0.65 0.32 -0.32
64 AT3G58300 Arabidopsis phospholipase-like protein (PEARLI 4) family 0.65 0.3 -0.31
65 AT2G24160 pseudogene, leucine rich repeat protein family, contains
leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; contains some similarity to Cf-4
(Lycopersicon hirsutum) gi|2808683|emb|CAA05268; blastp
match of 37% identity and 8.4e-98 P-value to
GP|2808683|emb|CAA05268.1||AJ002235 Cf-4 {Lycopersicon
hirsutum}		 -0.65 0.32 -0.32
66 AT1G19960 BEST Arabidopsis thaliana protein match is: transmembrane
receptors (TAIR:AT2G32140.1); Has 41 Blast hits to 41
proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa -
23; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes -
5 (source: NCBI BLink).		 -0.64 0.3 -0.33
67 AT5G41900 alpha/beta-Hydrolases superfamily protein -0.64 0.32 -0.31
68 AT2G30790 photosystem II subunit P-2 photosystem II subunit P-2 -0.64 0.32 -0.33
69 AT4G23180 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 cysteine-rich RLK (RECEPTOR-like
protein kinase) 10, RLK4		 -0.63 0.31 -0.34
70 AT3G56050 Protein kinase family protein -0.62 0.33 -0.29
71 AT1G35710 Protein kinase family protein with leucine-rich repeat
domain		 -0.62 0.34 -0.3
72 AT4G31330 Protein of unknown function, DUF599 -0.62 0.31 -0.31
73 AT4G01390 TRAF-like family protein -0.61 0.3 -0.33
74 AT3G29320 Glycosyl transferase, family 35 alpha-glucan phosphorylase 1 -0.61 0.31 -0.32
75 AT4G34510 3-ketoacyl-CoA synthase 17 3-ketoacyl-CoA synthase 17 -0.61 0.32 -0.32
76 AT2G14560 Protein of unknown function (DUF567) LATE UPREGULATED IN RESPONSE TO
HYALOPERONOSPORA PARASITICA		 -0.61 0.32 -0.31
77 AT1G67870 glycine-rich protein -0.6 0.31 -0.32
78 AT2G20250 unknown protein; Has 10 Blast hits to 10 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2;
Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.3 -0.32
79 AT5G67460 O-Glycosyl hydrolases family 17 protein -0.59 0.31 -0.32
80 AT4G26070 MAP kinase/ ERK kinase 1 ATMEK1, MAP kinase/ ERK kinase 1,
MITOGEN ACTIVATED PROTEIN KINASE
KINASE 1, NMAPKK		 -0.59 0.31 -0.31
81 AT2G05370 BEST Arabidopsis thaliana protein match is: RNA-dependent
RNA polymerase 6 (TAIR:AT3G49500.1); Has 65 Blast hits to
37 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.31 -0.32
82 AT2G07510 transposable element gene -0.58 0.32 -0.3
83 AT1G15320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: flower; EXPRESSED
DURING: petal differentiation and expansion stage; Has 62
Blast hits to 62 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.58 0.31 -0.32
84 AT3G20420 RNAse THREE-like protein 2 RNASEIII-LIKE 2, RNAse THREE-like
protein 2		 -0.58 0.32 -0.32
85 AT5G54610 ankyrin ankyrin -0.57 0.31 -0.32
86 AT5G66040 sulfurtransferase protein 16 sulfurtransferase protein 16 -0.57 0.29 -0.31
87 AT3G19720 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ACCUMULATION AND REPLICATION OF
CHLOROPLAST 5, Dynamin related
protein 5B		 -0.57 0.32 -0.31
88 AT5G58120 Disease resistance protein (TIR-NBS-LRR class) family -0.57 0.32 -0.31