AT1G55325 : GRAND CENTRAL
Query Information
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AGICode AT1G55325
Description RNA polymerase II transcription mediators
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G55325 RNA polymerase II transcription mediators GRAND CENTRAL, MACCHI-BOU 2 1 0.32 -0.3
2 AT1G01960 SEC7-like guanine nucleotide exchange family protein embryo sac development arrest 10 0.73 0.32 -0.33
3 AT5G65620 Zincin-like metalloproteases family protein 0.73 0.32 -0.31
4 AT5G18475 Pentatricopeptide repeat (PPR) superfamily protein 0.73 0.31 -0.31
5 AT4G00450 RNA polymerase II transcription mediators CENTER CITY, CRYPTIC PRECOCIOUS 0.73 0.35 -0.31
6 AT3G19170 presequence protease 1 presequence protease 1, ATZNMP,
presequence protease 1		 0.72 0.31 -0.32
7 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 0.71 0.31 -0.32
8 AT5G07280 Leucine-rich repeat transmembrane protein kinase EXCESS MICROSPOROCYTES1, EXTRA
SPOROGENOUS CELLS		 0.71 0.33 -0.3
9 AT2G07360 SH3 domain-containing protein 0.71 0.33 -0.32
10 AT3G59770 sacI homology domain-containing protein / WW
domain-containing protein		 ARABIDOPSIS THALIANA SUPPRESSOR OF
ACTIN 9, SUPPRESSOR OF ACTIN 9		 0.71 0.32 -0.3
11 AT3G50370 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 27734
Blast hits to 16708 proteins in 1259 species: Archae - 81;
Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants -
987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI
BLink).		 0.7 0.31 -0.31
12 AT4G24560 ubiquitin-specific protease 16 ubiquitin-specific protease 16 0.7 0.33 -0.32
13 AT1G15780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast
hits to 43153 proteins in 1828 species: Archae - 30;
Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants -
7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI
BLink).		 0.7 0.28 -0.31
14 AT4G38600 HEAT repeat ;HECT-domain (ubiquitin-transferase) KAKTUS, UBIQUITIN-PROTEIN LIGASE 3 0.7 0.32 -0.32
15 AT4G00660 RNAhelicase-like 8 ATRH8, RNAhelicase-like 8 0.7 0.31 -0.32
16 AT3G20290 EPS15 homology domain 1 EPS15 homology domain 1, EPS15
homology domain 1		 0.69 0.32 -0.31
17 AT4G01290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 1744
Blast hits to 1308 proteins in 219 species: Archae - 0;
Bacteria - 241; Metazoa - 793; Fungi - 253; Plants - 108;
Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).		 0.69 0.32 -0.3
18 AT5G17350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G03280.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.68 0.32 -0.3
19 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 0.68 0.31 -0.28
20 AT5G18230 transcription regulator NOT2/NOT3/NOT5 family protein 0.68 0.29 -0.28
21 AT1G24490 OxaA/YidC-like membrane insertion protein ALBINA 4, ARABIDOPSIS THALIANA
ENVELOPE MEMBRANE INTEGRASE		 0.68 0.34 -0.33
22 AT5G06600 ubiquitin-specific protease 12 AtUBP12, ubiquitin-specific
protease 12		 0.68 0.31 -0.31
23 AT2G19390 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G29790.1); Has 203 Blast hits
to 188 proteins in 60 species: Archae - 0; Bacteria - 11;
Metazoa - 24; Fungi - 34; Plants - 93; Viruses - 0; Other
Eukaryotes - 41 (source: NCBI BLink).		 0.68 0.32 -0.31
24 AT5G23110 Zinc finger, C3HC4 type (RING finger) family protein 0.67 0.31 -0.32
25 AT4G39420 unknown protein; Has 46 Blast hits to 40 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.67 0.31 -0.33
26 AT5G27970 ARM repeat superfamily protein 0.67 0.33 -0.28
27 AT4G29620 Cytidine/deoxycytidylate deaminase family protein 0.67 0.3 -0.32
28 AT3G63180 TIC-like TICKLE, TIC-like 0.67 0.3 -0.28
29 AT1G03060 Beige/BEACH domain ;WD domain, G-beta repeat protein SPIRRIG 0.67 0.32 -0.34
30 AT5G05570 transducin family protein / WD-40 repeat family protein 0.66 0.31 -0.31
31 AT1G32750 HAC13 protein (HAC13) GTD1, HISTONE ACETYLTRANSFERASE OF
THE CBP FAMILY 13, HAF01, HISTONE
ACETYLTRANSFERASE OF THE TAFII250
FAMILY 1, TBP-ASSOCIATED FACTOR 1		 0.66 0.31 -0.31
32 AT2G33790 arabinogalactan protein 30 arabinogalactan protein 30,
ATAGP30		 -0.66 0.31 -0.32
33 AT3G45960 expansin-like A3 expansin-like A3, ATEXPL3, ATHEXP
BETA 2.3, expansin-like A3, EXPL3		 -0.66 0.34 -0.29
34 AT1G55350 calpain-type cysteine protease family ATDEK1, DEFECTIVE KERNEL 1, embryo
defective 1275, EMBRYO DEFECTIVE
80		 0.66 0.31 -0.3
35 AT5G59640 transposable element gene 0.66 0.3 -0.33
36 AT5G58410 HEAT/U-box domain-containing protein 0.66 0.35 -0.31
37 ATCG00750 ribosomal protein S11 ribosomal protein S11 0.66 0.32 -0.31
38 AT5G15180 Peroxidase superfamily protein -0.66 0.31 -0.29
39 AT5G61600 ethylene response factor 104 ethylene response factor 104 -0.66 0.31 -0.33
40 AT4G17140 pleckstrin homology (PH) domain-containing protein 0.65 0.31 -0.29
41 AT1G02020 nitroreductase family protein 0.65 0.31 -0.32
42 AT4G26510 uridine kinase-like 4 uridine kinase-like 4 0.65 0.3 -0.33
43 AT5G25520 SPOC domain / Transcription elongation factor S-II protein 0.65 0.31 -0.33
44 AT5G04560 HhH-GPD base excision DNA repair family protein DEMETER 0.65 0.32 -0.31
45 AT5G47480 RGPR-related 0.65 0.31 -0.3
46 AT5G51190 Integrase-type DNA-binding superfamily protein -0.65 0.31 -0.32
47 AT5G11040 TRS120 AtTRS120, TRS120 0.65 0.32 -0.33
48 AT5G15240 Transmembrane amino acid transporter family protein 0.65 0.31 -0.31
49 AT1G06410 trehalose-phosphatase/synthase 7 trehalose-phosphatase/synthase 7,
ATTPSA, TREHALOSE -6-PHOSPHATASE
SYNTHASE S7,
trehalose-phosphatase/synthase 7		 0.65 0.29 -0.31
50 AT4G25970 phosphatidylserine decarboxylase 3 phosphatidylserine decarboxylase 3 0.65 0.31 -0.3
51 AT3G50590 Transducin/WD40 repeat-like superfamily protein 0.64 0.29 -0.3
52 AT5G04560 HhH-GPD base excision DNA repair family protein DEMETER 0.64 0.31 -0.3
53 AT2G33540 C-terminal domain phosphatase-like 3 ATCPL3, C-terminal domain
phosphatase-like 3		 0.64 0.34 -0.3
54 AT5G19310 Homeotic gene regulator 0.64 0.32 -0.32
55 AT5G24350 CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39
(InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.63 0.31 -0.32
56 AT1G59510 Carbohydrate-binding protein CF9 0.63 0.3 -0.33
57 AT1G79830 golgin candidate 5 golgin candidate 5 0.63 0.31 -0.31
58 AT5G16520 unknown protein; Has 25 Blast hits to 25 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.63 0.31 -0.31
59 AT4G03390 STRUBBELIG-receptor family 3 STRUBBELIG-receptor family 3 0.63 0.3 -0.32
60 AT5G03970 F-box associated ubiquitination effector family protein -0.62 0.29 -0.29
61 AT2G39950 unknown protein; Has 978 Blast hits to 254 proteins in 81
species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi -
53; Plants - 41; Viruses - 0; Other Eukaryotes - 767
(source: NCBI BLink).		 0.62 0.33 -0.3
62 AT5G66320 GATA transcription factor 5 GATA transcription factor 5 0.62 0.32 -0.32
63 AT1G01040 dicer-like 1 ABNORMAL SUSPENSOR 1, DICER-LIKE
1, CARPEL FACTORY, dicer-like 1,
EMBRYO DEFECTIVE 60, EMBRYO
DEFECTIVE 76, SHORT INTEGUMENTS 1,
SUSPENSOR 1		 0.62 0.33 -0.31
64 AT1G02890 AAA-type ATPase family protein 0.62 0.32 -0.33
65 AT5G59990 CCT motif family protein -0.62 0.33 -0.3
66 AT1G17070 GC-rich sequence DNA-binding factor-like protein with
Tuftelin interacting domain		 0.62 0.32 -0.3
67 AT4G34430 DNA-binding family protein SWITCH/SUCROSE NONFERMENTING 3D,
CHB3		 0.62 0.31 -0.29
68 AT3G18810 Protein kinase superfamily protein proline-rich extensin-like
receptor kinase 6, proline-rich
extensin-like receptor kinase 6		 0.62 0.33 -0.32
69 AT5G56270 WRKY DNA-binding protein 2 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 2, WRKY
DNA-binding protein 2		 0.62 0.32 -0.31
70 AT1G24190 SIN3-like 3 ARABIDOPSIS THALIANA SIN3 HOMOLOG,
ARABIDOPSIS THALIANA SIN3 HOMOLOG,
SIN3-like 3		 0.62 0.33 -0.3
71 AT1G21630 Calcium-binding EF hand family protein 0.61 0.3 -0.3
72 AT2G24600 Ankyrin repeat family protein -0.61 0.31 -0.33
73 AT4G36630 Vacuolar sorting protein 39 EMBRYO DEFECTIVE 2754 0.61 0.34 -0.32
74 AT5G27150 Na+/H+ exchanger 1 AT-NHX1, ATNHX, ATNHX1, Na+/H+
exchanger 1		 0.61 0.32 -0.31
75 AT1G32490 RNA helicase family protein EMBRYO DEFECTIVE 2733, ENHANCED
SILENCING PHENOTYPE 3		 0.61 0.31 -0.34
76 AT2G47980 sister-chromatid cohesion protein 3 SISTER-CHROMATID COHESION PROTEIN
3, sister-chromatid cohesion
protein 3		 0.61 0.34 -0.3
77 AT5G58040 homolog of yeast FIP1 [V] homolog of yeast FIP1 [V],
ATFIPS5, homolog of yeast FIP1
[V], FIPS5		 0.61 0.32 -0.32
78 AT2G04830 Protein of unknown function (DUF295) 0.61 0.3 -0.32
79 AT3G11650 NDR1/HIN1-like 2 NDR1/HIN1-like 2 -0.61 0.33 -0.3
80 AT1G28400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins
in 668 species: Archae - 72; Bacteria - 1460; Metazoa -
1191; Fungi - 1038; Plants - 174; Viruses - 64; Other
Eukaryotes - 41375 (source: NCBI BLink).		 -0.61 0.33 -0.31
81 AT3G14860 NHL domain-containing protein 0.61 0.32 -0.3
82 AT2G29080 FTSH protease 3 FTSH protease 3 0.6 0.34 -0.31
83 AT1G07830 ribosomal protein L29 family protein -0.6 0.32 -0.31
84 AT3G52640 Zn-dependent exopeptidases superfamily protein 0.6 0.31 -0.32
85 AT5G56290 peroxin 5 ARABIDOPSIS PEROXIN 5, EMBRYO
DEFECTIVE 2790, peroxin 5		 0.6 0.32 -0.3
86 AT4G11560 bromo-adjacent homology (BAH) domain-containing protein 0.6 0.32 -0.3
87 AT4G39320 microtubule-associated protein-related -0.6 0.32 -0.33
88 AT4G09760 Protein kinase superfamily protein -0.6 0.32 -0.31
89 AT1G76860 Small nuclear ribonucleoprotein family protein -0.6 0.32 -0.31
90 AT1G03850 Glutaredoxin family protein glutaredoxin 13, glutaredoxin 13 -0.6 0.31 -0.32
91 AT4G39756 Galactose oxidase/kelch repeat superfamily protein -0.6 0.32 -0.32
92 AT4G29090 Ribonuclease H-like superfamily protein 0.6 0.32 -0.31
93 AT2G14570 transposable element gene 0.6 0.33 -0.32
94 AT5G43310 COP1-interacting protein-related 0.6 0.32 -0.32
95 AT2G45540 WD-40 repeat family protein / beige-related 0.59 0.32 -0.32
96 AT2G46400 WRKY DNA-binding protein 46 WRKY DNA-BINDING PROTEIN 46, WRKY
DNA-binding protein 46		 -0.59 0.31 -0.33
97 AT1G57650 ATP binding 0.59 0.32 -0.32
98 AT1G71820 SEC6 SEC6 0.59 0.31 -0.32
99 AT5G04210 CCCH-type zinc fingerfamily protein with RNA-binding domain -0.59 0.3 -0.32
100 AT5G01400 HEAT repeat-containing protein ENHANCED SILENCING PHENOTYPE 4 0.59 0.31 -0.33
101 AT4G25470 C-repeat/DRE binding factor 2 ATCBF2, C-repeat/DRE binding
factor 2, DRE/CRT-BINDING PROTEIN
1C, FREEZING TOLERANCE QTL 4		 -0.59 0.31 -0.33
102 AT5G60100 pseudo-response regulator 3 pseudo-response regulator 3,
pseudo-response regulator 3		 0.59 0.32 -0.31
103 AT5G56540 arabinogalactan protein 14 arabinogalactan protein 14,
ATAGP14		 -0.59 0.33 -0.32
104 AT5G19240 Glycoprotein membrane precursor GPI-anchored -0.59 0.33 -0.33
105 AT5G16280 Tetratricopeptide repeat (TPR)-like superfamily protein 0.59 0.32 -0.32
106 AT5G11540 D-arabinono-1,4-lactone oxidase family protein -0.58 0.33 -0.33
107 AT1G55030 RNI-like superfamily protein -0.58 0.31 -0.33
108 AT2G31590 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G04730.1); Has 30 Blast hits
to 30 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.58 0.32 -0.31
109 AT4G17980 NAC domain containing protein 71 NAC domain containing protein 71,
NAC domain containing protein 71		 -0.58 0.34 -0.3
110 AT5G43822 Pentatricopeptide repeat (PPR) superfamily protein -0.58 0.31 -0.31
111 AT5G47450 tonoplast intrinsic protein 2;3 ARABIDOPSIS THALIANA TONOPLAST
INTRINSIC PROTEIN 2;3,
DELTA-TONOPLAST INTRINSIC PROTEIN
3, tonoplast intrinsic protein 2;3		 -0.56 0.32 -0.33
112 AT4G24570 dicarboxylate carrier 2 dicarboxylate carrier 2 -0.56 0.33 -0.29
113 AT2G33260 Tryptophan/tyrosine permease -0.55 0.31 -0.32
114 AT5G08170 porphyromonas-type peptidyl-arginine deiminase family
protein		 AGMATINE IMINOHYDROLASE, EMBRYO
DEFECTIVE 1873		 -0.55 0.31 -0.33
115 AT1G30473 Heavy metal transport/detoxification superfamily protein -0.55 0.29 -0.3
116 AT4G23496 SPIRAL1-like5 SPIRAL1-like5 -0.55 0.32 -0.32
117 AT3G13650 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.54 0.29 -0.32
118 AT1G73540 nudix hydrolase homolog 21 nudix hydrolase homolog 21, nudix
hydrolase homolog 21		 -0.54 0.31 -0.35
119 AT2G28355 low-molecular-weight cysteine-rich 5 low-molecular-weight cysteine-rich
5		 -0.54 0.33 -0.29
120 AT5G28280 pseudogene, sterol desaturase domain-containing protein,
CER1-like, A.thaliana, ATCER1L19; blastp match of 55%
identity and 8.9e-22 P-value to
GP|4769012|gb|AAD29719.1|AF143746_1|AF143746 CER1 {Oryza
sativa}		 -0.54 0.29 -0.3
121 AT3G30260 AGAMOUS-like 79 AGAMOUS-like 79 -0.54 0.31 -0.33
122 AT4G08040 1-aminocyclopropane-1-carboxylate synthase 11 1-aminocyclopropane-1-carboxylate
synthase 11		 -0.54 0.31 -0.32
123 AT5G55780 Cysteine/Histidine-rich C1 domain family protein -0.53 0.3 -0.31
124 AT3G24360 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 -0.53 0.31 -0.33
125 AT3G20030 F-box and associated interaction domains-containing protein -0.53 0.32 -0.3
126 AT1G22810 Integrase-type DNA-binding superfamily protein -0.53 0.32 -0.29
127 AT5G52140 RING/U-box superfamily protein -0.53 0.33 -0.32
128 AT1G22460 O-fucosyltransferase family protein -0.53 0.34 -0.31
129 AT3G07340 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.53 0.34 -0.31
130 AT5G26930 GATA transcription factor 23 GATA transcription factor 23 -0.52 0.31 -0.31
131 AT5G52750 Heavy metal transport/detoxification superfamily protein -0.52 0.31 -0.33
132 AT3G25640 Protein of unknown function, DUF617 -0.52 0.29 -0.33
133 AT2G41370 Ankyrin repeat family protein / BTB/POZ domain-containing
protein		 BLADE ON PETIOLE2 -0.52 0.3 -0.3
134 AT1G22190 Integrase-type DNA-binding superfamily protein related to AP2 4 -0.52 0.3 -0.3
135 AT4G39370 ubiquitin-specific protease 27 ubiquitin-specific protease 27 -0.52 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
136 C0089 Fortunellin - - - 0.61 0.42 -0.48