AT1G77470 : EMBRYO DEFECTIVE 2810
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AGICode AT1G77470
Description replication factor C subunit 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G77470 replication factor C subunit 3 EMBRYO DEFECTIVE 2810, replication
factor C subunit 3, replication
factor C 5
1 0.32 -0.32
2 AT5G17160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G03130.1); Has 14330 Blast
hits to 10381 proteins in 896 species: Archae - 94;
Bacteria - 2881; Metazoa - 4019; Fungi - 1576; Plants -
515; Viruses - 110; Other Eukaryotes - 5135 (source: NCBI
BLink).
0.8 0.31 -0.31
3 AT5G62710 Leucine-rich repeat protein kinase family protein 0.8 0.32 -0.3
4 AT2G38810 histone H2A 8 histone H2A 8 0.79 0.32 -0.32
5 AT5G43280 delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 delta(3,5),delta(2,4)-dienoyl-CoA
isomerase 1,
delta(3,5),delta(2,4)-dienoyl-CoA
isomerase 1,
DELTA(3,5),DELTA(2,4)-DIENOYL-COA
ISOMERASE 1
-0.79 0.33 -0.31
6 AT1G71100 Ribose 5-phosphate isomerase, type A protein RADIAL SWELLING 10 -0.78 0.34 -0.3
7 AT2G01350 quinolinate phoshoribosyltransferase quinolinate
phoshoribosyltransferase
-0.78 0.31 -0.32
8 AT1G18250 Pathogenesis-related thaumatin superfamily protein ATLP-1 0.77 0.32 -0.3
9 AT1G50240 Protein kinase family protein with ARM repeat domain FUSED 0.77 0.31 -0.32
10 AT1G02170 metacaspase 1 ARABIDOPSIS THALIANA METACASPASE
1, metacaspase 1b, ARABIDOPSIS
THALIANA METACASPASE 1B, LSD ONE
LIKE 3, metacaspase 1, metacaspase
1b
-0.77 0.31 -0.31
11 AT5G07220 BCL-2-associated athanogene 3 BCL-2-associated athanogene 3,
BCL-2-associated athanogene 3
-0.77 0.29 -0.32
12 AT4G27990 YGGT family protein ATYLMG1-2, YLMG1-2 -0.77 0.32 -0.3
13 AT2G31320 poly(ADP-ribose) polymerase 2 ATPARP2, poly(ADP-ribose)
polymerase 2
0.77 0.3 -0.34
14 AT4G27320 Adenine nucleotide alpha hydrolases-like superfamily
protein
ATPHOS34, PHOS34 -0.77 0.32 -0.3
15 AT2G36330 Uncharacterised protein family (UPF0497) -0.77 0.3 -0.32
16 AT1G03970 G-box binding factor 4 G-box binding factor 4 -0.76 0.31 -0.3
17 AT3G06030 NPK1-related protein kinase 3 NPK1-related protein kinase 3,
AtANP3, MAPKKK12, NPK1-related
protein kinase 3
0.76 0.31 -0.32
18 AT3G03130 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G17160.1); Has 7130 Blast hits
to 3690 proteins in 504 species: Archae - 22; Bacteria -
2666; Metazoa - 1654; Fungi - 721; Plants - 246; Viruses -
56; Other Eukaryotes - 1765 (source: NCBI BLink).
0.76 0.33 -0.31
19 AT5G61640 peptidemethionine sulfoxide reductase 1 ARABIDOPSIS THALIANA METHIONINE
SULFOXIDE REDUCTASE A1,
peptidemethionine sulfoxide
reductase 1
-0.76 0.32 -0.33
20 AT3G59670 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G37440.2); Has 77 Blast hits
to 77 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink).
0.76 0.32 -0.34
21 AT5G07470 peptidemethionine sulfoxide reductase 3 ARABIDOPSIS THALIANA METHIONINE
SULFOXIDE REDUCTASE 3,
peptidemethionine sulfoxide
reductase 3
-0.76 0.31 -0.32
22 AT4G32830 ataurora1 ataurora1, ataurora1 0.76 0.3 -0.32
23 AT1G13730 Nuclear transport factor 2 (NTF2) family protein with RNA
binding (RRM-RBD-RNP motifs) domain
0.76 0.33 -0.33
24 AT1G59540 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
ZCF125 0.76 0.31 -0.3
25 AT2G39870 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G55690.1); Has 73 Blast hits
to 71 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 2; Plants - 69; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
0.75 0.32 -0.3
26 AT1G25370 Protein of unknown function (DUF1639) -0.75 0.32 -0.31
27 AT1G33260 Protein kinase superfamily protein -0.75 0.31 -0.31
28 AT1G02690 importin alpha isoform 6 importin alpha isoform 6 0.75 0.31 -0.32
29 AT1G09450 Protein kinase superfamily protein AtHaspin, Haspin-related gene 0.75 0.32 -0.31
30 AT1G16840 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits
to 71 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
-0.75 0.33 -0.32
31 AT1G74360 Leucine-rich repeat protein kinase family protein -0.75 0.32 -0.36
32 AT1G67630 DNA polymerase alpha 2 EMBRYO DEFECTIVE 2814, DNA
polymerase alpha 2
0.75 0.3 -0.35
33 AT3G01330 DP-E2F-like protein 3 DP-E2F-like protein 3, E2FF,
E2F-LIKE 2
0.75 0.32 -0.32
34 AT1G50940 electron transfer flavoprotein alpha electron transfer flavoprotein
alpha
-0.75 0.33 -0.33
35 AT3G23890 topoisomerase II ATTOPII, topoisomerase II 0.75 0.31 -0.32
36 AT1G23730 beta carbonic anhydrase 3 BETA CARBONIC ANHYDRASE 3, beta
carbonic anhydrase 3
-0.74 0.3 -0.31
37 AT1G63100 GRAS family transcription factor 0.74 0.32 -0.31
38 AT4G14200 Pentatricopeptide repeat (PPR) superfamily protein 0.74 0.31 -0.29
39 AT1G60390 polygalacturonase 1 polygalacturonase 1 0.74 0.31 -0.31
40 AT4G24790 AAA-type ATPase family protein 0.74 0.34 -0.32
41 AT1G50490 ubiquitin-conjugating enzyme 20 ubiquitin-conjugating enzyme 20 0.74 0.3 -0.32
42 AT4G17830 Peptidase M20/M25/M40 family protein -0.74 0.32 -0.32
43 AT5G56580 MAP kinase kinase 6 ARABIDOPSIS NQK1, ARABIDOPSIS
THALIANA MAP KINASE KINASE 6, MAP
kinase kinase 6
0.74 0.32 -0.34
44 AT1G17080 Ribosomal protein L18ae family -0.74 0.33 -0.32
45 AT3G21500 1-deoxy-D-xylulose 5-phosphate synthase 1 1-deoxy-D-xylulose 5-phosphate
synthase 1
-0.74 0.31 -0.31
46 AT1G26690 emp24/gp25L/p24 family/GOLD family protein -0.74 0.31 -0.31
47 AT1G79590 syntaxin of plants 52 ATSYP52, syntaxin of plants 52 -0.74 0.34 -0.32
48 AT5G65860 ankyrin repeat family protein 0.74 0.29 -0.34
49 AT1G05470 DNAse I-like superfamily protein COTYLEDON VASCULAR PATTERN 2 0.74 0.31 -0.33
50 AT4G35360 Uncharacterised conserved protein (UCP030210) -0.73 0.3 -0.3
51 AT4G34390 extra-large GTP-binding protein 2 extra-large GTP-binding protein 2 -0.73 0.3 -0.34
52 AT5G66230 Chalcone-flavanone isomerase family protein 0.73 0.33 -0.32
53 AT1G68300 Adenine nucleotide alpha hydrolases-like superfamily
protein
-0.73 0.33 -0.33
54 AT4G37490 CYCLIN B1;1 CYCLIN 1, CYCB1, CYCLIN B1;1 0.73 0.29 -0.32
55 AT1G02305 Cysteine proteinases superfamily protein -0.73 0.32 -0.32
56 AT4G13360 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein
-0.73 0.3 -0.32
57 AT5G06870 polygalacturonase inhibiting protein 2 ARABIDOPSIS POLYGALACTURONASE
INHIBITING PROTEIN 2,
polygalacturonase inhibiting
protein 2
-0.73 0.33 -0.34
58 AT3G15580 Ubiquitin-like superfamily protein AUTOPHAGY 8H, AUTOPHAGY 8I -0.73 0.31 -0.31
59 AT1G49520 SWIB complex BAF60b domain-containing protein -0.73 0.3 -0.31
60 AT5G16880 Target of Myb protein 1 -0.73 0.33 -0.33
61 AT5G03660 Family of unknown function (DUF662) -0.72 0.33 -0.33
62 AT5G61010 exocyst subunit exo70 family protein E2 exocyst subunit exo70 family
protein E2, exocyst subunit exo70
family protein E2
-0.72 0.33 -0.33
63 AT5G48360 Actin-binding FH2 (formin homology 2) family protein 0.72 0.32 -0.32
64 AT3G01970 WRKY DNA-binding protein 45 WRKY DNA-BINDING PROTEIN 45, WRKY
DNA-binding protein 45
-0.72 0.31 -0.34
65 AT1G48440 B-cell receptor-associated 31-like -0.72 0.32 -0.33
66 AT5G54940 Translation initiation factor SUI1 family protein -0.72 0.29 -0.3
67 AT3G19010 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein
-0.72 0.31 -0.31
68 AT1G17460 TRF-like 3 TRF-like 3 0.72 0.33 -0.33
69 AT1G34355 forkhead-associated (FHA) domain-containing protein PARALLEL SPINDLE 1, PARALLEL
SPINDLE 1
0.72 0.31 -0.33
70 AT3G56480 myosin heavy chain-related 0.72 0.3 -0.29
71 AT1G49580 Calcium-dependent protein kinase (CDPK) family protein 0.72 0.32 -0.28
72 AT3G56870 unknown protein; Has 204 Blast hits to 201 proteins in 58
species: Archae - 0; Bacteria - 10; Metazoa - 72; Fungi -
8; Plants - 41; Viruses - 0; Other Eukaryotes - 73 (source:
NCBI BLink).
0.72 0.32 -0.29
73 AT2G29890 villin-like 1 ATVLN1, villin 1 0.72 0.29 -0.34
74 AT4G26660 INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED
DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s:
Kinesin-related protein (InterPro:IPR010544); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G55520.2); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).
0.72 0.31 -0.31
75 AT1G22180 Sec14p-like phosphatidylinositol transfer family protein -0.72 0.3 -0.32
76 AT3G49750 receptor like protein 44 receptor like protein 44, receptor
like protein 44
0.72 0.31 -0.33
77 AT5G49890 chloride channel C ATCLC-C, chloride channel C -0.72 0.31 -0.33
78 AT3G26020 Protein phosphatase 2A regulatory B subunit family protein -0.72 0.3 -0.33
79 AT3G54300 vesicle-associated membrane protein 727 vesicle-associated membrane
protein 727, VAMP727,
vesicle-associated membrane
protein 727
-0.72 0.3 -0.34
80 AT5G43020 Leucine-rich repeat protein kinase family protein 0.72 0.3 -0.33
81 AT3G09010 Protein kinase superfamily protein -0.72 0.32 -0.35
82 AT1G14370 protein kinase 2A protein kinase 2A, kinase 1,
PBS1-like 2
-0.71 0.3 -0.34
83 AT5G25540 CTC-interacting domain 6 CTC-interacting domain 6 -0.71 0.29 -0.34
84 AT2G28310 Protein of unknown function (DUF707) 0.71 0.32 -0.32
85 AT5G25580 BEST Arabidopsis thaliana protein match is: DDT domain
superfamily (TAIR:AT1G18950.1); Has 178 Blast hits to 178
proteins in 75 species: Archae - 0; Bacteria - 4; Metazoa -
51; Fungi - 33; Plants - 60; Viruses - 1; Other Eukaryotes
- 29 (source: NCBI BLink).
0.71 0.34 -0.33
86 AT4G24990 Ubiquitin family protein ATGP4 -0.71 0.32 -0.3
87 AT5G16830 syntaxin of plants 21 ATPEP12, ATSYP21, PEP12, PEP12P,
syntaxin of plants 21
-0.71 0.32 -0.3
88 AT4G33400 Vacuolar import/degradation, Vid27-related protein 0.71 0.33 -0.32
89 AT3G01170 Ribosomal protein L34e superfamily protein -0.71 0.32 -0.3
90 AT4G25880 pumilio 6 pumilio 6, pumilio 6 0.71 0.32 -0.3
91 AT3G59290 ENTH/VHS family protein -0.71 0.29 -0.31
92 AT3G56200 Transmembrane amino acid transporter family protein -0.71 0.32 -0.3
93 AT3G02150 plastid transcription factor 1 plastid transcription factor 1,
TEOSINTE BRANCHED1, CYCLOIDEA AND
PCF TRANSCRIPTION FACTOR 13, TFPD
-0.71 0.29 -0.31
94 AT1G22280 phytochrome-associated protein phosphatase type 2C phytochrome-associated protein
phosphatase type 2C
-0.71 0.31 -0.32
95 AT5G55340 MBOAT (membrane bound O-acyl transferase) family protein 0.71 0.31 -0.29
96 AT1G66240 homolog of anti-oxidant 1 ATATX1, homolog of anti-oxidant 1 -0.71 0.32 -0.31
97 AT2G24860 DnaJ/Hsp40 cysteine-rich domain superfamily protein -0.71 0.32 -0.32
98 AT1G30090 Galactose oxidase/kelch repeat superfamily protein -0.71 0.32 -0.33
99 AT5G11810 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).
-0.71 0.29 -0.3
100 AT3G54350 Forkhead-associated (FHA) domain-containing protein embryo defective 1967 0.71 0.3 -0.31
101 AT5G16730 Plant protein of unknown function (DUF827) -0.71 0.3 -0.28
102 AT1G66880 Protein kinase superfamily protein -0.7 0.34 -0.32
103 AT3G16785 phospholipase D P1 PHOSPHOLIPASE D ZETA 1,
phospholipase D P1, PHOSPHOLIPASE
D ZETA1, PLDZETA1
-0.7 0.3 -0.33
104 AT5G49570 peptide-N-glycanase 1 peptide-N-glycanase 1,
peptide-N-glycanase 1
-0.7 0.31 -0.31
105 AT2G11910 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 92883 Blast hits to
31060 proteins in 1576 species: Archae - 765; Bacteria -
32670; Metazoa - 21164; Fungi - 12252; Plants - 4238;
Viruses - 1282; Other Eukaryotes - 20512 (source: NCBI
BLink).
0.7 0.3 -0.31
106 AT5G61530 small G protein family protein / RhoGAP family protein -0.7 0.33 -0.32
107 AT2G06050 oxophytodienoate-reductase 3 AtOPR3, DELAYED DEHISCENCE 1,
oxophytodienoate-reductase 3
-0.7 0.29 -0.32
108 AT3G23600 alpha/beta-Hydrolases superfamily protein -0.7 0.34 -0.31
109 AT4G10140 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 15 growth
stages; CONTAINS InterPro DOMAIN/s: Protein of unknown
function DUF2062 (InterPro:IPR018639); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G33490.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).
-0.7 0.32 -0.3
110 AT1G20110 RING/FYVE/PHD zinc finger superfamily protein -0.7 0.32 -0.29
111 AT2G41890 curculin-like (mannose-binding) lectin family protein / PAN
domain-containing protein
0.7 0.32 -0.33
112 AT1G03740 Protein kinase superfamily protein -0.7 0.31 -0.32
113 AT3G45310 Cysteine proteinases superfamily protein -0.69 0.3 -0.3
114 AT3G17880 tetraticopeptide domain-containing thioredoxin ARABIDOPSIS THALIANA
HSP70-INTERACTING PROTEIN 2,
tetraticopeptide domain-containing
thioredoxin, HSC-70 INTERACTING
PROTEIN, tetraticopeptide
domain-containing thioredoxin
-0.69 0.3 -0.3
115 AT3G10310 P-loop nucleoside triphosphate hydrolases superfamily
protein with CH (Calponin Homology) domain
0.69 0.33 -0.32
116 AT1G05950 unknown protein; Has 50 Blast hits to 45 proteins in 14
species: Archae - 5; Bacteria - 0; Metazoa - 4; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 7 (source:
NCBI BLink).
0.69 0.3 -0.31
117 AT1G34065 S-adenosylmethionine carrier 2 S-adenosylmethionine carrier 2 0.69 0.33 -0.29
118 AT1G20510 OPC-8:0 CoA ligase1 OPC-8:0 CoA ligase1 -0.69 0.28 -0.32
119 AT2G43530 Scorpion toxin-like knottin superfamily protein -0.69 0.33 -0.32
120 AT5G60620 glycerol-3-phosphate acyltransferase 9 glycerol-3-phosphate
acyltransferase 9
-0.69 0.3 -0.29
121 AT3G57480 zinc finger (C2H2 type, AN1-like) family protein -0.69 0.35 -0.33
122 AT1G70700 TIFY domain/Divergent CCT motif family protein JASMONATE-ZIM-DOMAIN PROTEIN 9,
TIFY7
-0.69 0.3 -0.31
123 AT5G43940 GroES-like zinc-binding dehydrogenase family protein ALCOHOL DEHYDROGENASE 2, ATGSNOR1,
S-NITROSOGLUTATHIONE REDUCTASE,
sensitive to hot temperatures 5,
PARAQUAT RESISTANT 2
-0.69 0.32 -0.34
124 AT2G36970 UDP-Glycosyltransferase superfamily protein -0.69 0.33 -0.32
125 AT5G43190 Galactose oxidase/kelch repeat superfamily protein -0.69 0.34 -0.32
126 AT1G77720 putative protein kinase 1 putative protein kinase 1 0.69 0.33 -0.32
127 AT5G34930 arogenate dehydrogenase -0.69 0.31 -0.3
128 AT4G26760 microtubule-associated protein 65-2 microtubule-associated protein
65-2
0.69 0.32 -0.29
129 AT3G25100 cell division cycle 45 cell division cycle 45 0.69 0.28 -0.31
130 AT5G59420 OSBP(oxysterol binding protein)-related protein 3C OSBP(oxysterol binding
protein)-related protein 3C
-0.69 0.32 -0.32
131 AT2G45140 plant VAP homolog 12 plant VAP homolog 12 -0.69 0.33 -0.29
132 AT3G20260 Protein of unknown function (DUF1666) 0.69 0.31 -0.32
133 AT5G07810 SNF2 domain-containing protein / helicase domain-containing
protein / HNH endonuclease domain-containing protein
0.69 0.31 -0.33
134 AT5G42300 ubiquitin-like protein 5 ubiquitin-like protein 5 -0.69 0.31 -0.3
135 AT3G53190 Pectin lyase-like superfamily protein 0.68 0.32 -0.32
136 AT1G79880 RNA recognition motif (RRM)-containing protein 0.68 0.32 -0.32
137 AT1G11280 S-locus lectin protein kinase family protein 0.68 0.31 -0.3
138 AT1G63480 AT hook motif DNA-binding family protein 0.68 0.31 -0.31
139 AT5G37010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT1G65710.1); Has 6746 Blast hits to 5259
proteins in 486 species: Archae - 7; Bacteria - 485;
Metazoa - 3508; Fungi - 577; Plants - 378; Viruses - 50;
Other Eukaryotes - 1741 (source: NCBI BLink).
0.68 0.34 -0.29
140 AT2G21800 essential meiotic endonuclease 1A essential meiotic endonuclease 1A,
EME1A, essential meiotic
endonuclease 1A
0.67 0.3 -0.31
141 AT1G18040 cyclin-dependent kinase D1;3 CYCLIN-DEPENDENT KINASE D1;3,
CAK2AT, cyclin-dependent kinase
D1;3
0.67 0.32 -0.32
142 AT1G79760 downstream target of AGL15-4 downstream target of AGL15-4 0.67 0.32 -0.31
143 AT4G14970 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 6 growth stages; Has 257 Blast hits to 164 proteins
in 70 species: Archae - 0; Bacteria - 4; Metazoa - 189;
Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 26
(source: NCBI BLink).
0.67 0.31 -0.36
144 AT3G16870 GATA transcription factor 17 GATA transcription factor 17 0.67 0.32 -0.32
145 AT5G03870 Glutaredoxin family protein 0.67 0.3 -0.31
146 AT1G71790 Subunits of heterodimeric actin filament capping protein
Capz superfamily
0.67 0.29 -0.33
147 AT1G63640 P-loop nucleoside triphosphate hydrolases superfamily
protein with CH (Calponin Homology) domain
0.67 0.28 -0.33
148 AT5G06940 Leucine-rich repeat receptor-like protein kinase family
protein
0.67 0.32 -0.34
149 AT3G56550 Pentatricopeptide repeat (PPR) superfamily protein 0.67 0.33 -0.33
150 AT5G27740 ATPase family associated with various cellular activities
(AAA)
EMBRYO DEFECTIVE 161, EMBRYO
DEFECTIVE 251, EMBRYO DEFECTIVE
2775, replication factor C 3
0.67 0.3 -0.33