AT1G68790 : CROWDED NUCLEI 3
Query Information
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AGICode AT1G68790
Description little nuclei3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G68790 little nuclei3 CROWDED NUCLEI 3, LITTLE NUCLEI3 1 0.33 -0.32
2 AT2G02780 Leucine-rich repeat protein kinase family protein 0.74 0.31 -0.32
3 AT4G27880 Protein with RING/U-box and TRAF-like domains -0.69 0.3 -0.31
4 AT5G43860 chlorophyllase 2 ARABIDOPSIS THALIANA
CHLOROPHYLLASE 2, chlorophyllase 2		 -0.68 0.32 -0.3
5 AT1G77570 Winged helix-turn-helix transcription repressor DNA-binding -0.67 0.31 -0.32
6 AT5G51410 LUC7 N_terminus domain-containing protein -0.66 0.31 -0.32
7 AT2G30000 PHF5-like protein -0.66 0.34 -0.3
8 AT2G45980 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G00355.2); Has 93 Blast hits to 90 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 ATG8-interacting protein 1 -0.65 0.33 -0.3
9 AT4G27750 binding IMPAIRED SUCROSE INDUCTION 1 -0.65 0.32 -0.3
10 AT5G39250 F-box family protein -0.64 0.31 -0.3
11 AT4G16500 Cystatin/monellin superfamily protein -0.63 0.31 -0.31
12 AT4G30010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 26 plant structures;
EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39
proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.63 0.33 -0.31
13 AT3G06240 F-box family protein -0.62 0.34 -0.31
14 AT5G50930 Histone superfamily protein -0.62 0.31 -0.3
15 AT5G65930 kinesin-like calmodulin-binding protein (ZWICHEL) KINESIN-LIKE CALMODULIN-BINDING
PROTEIN, POTATO KINESIN-LIKE
CALMODULIN-BINDING PROTEIN,
ZWICHEL		 0.62 0.3 -0.31
16 AT4G17640 casein kinase II beta chain 2 casein kinase II beta chain 2 -0.62 0.3 -0.32
17 AT4G21110 G10 family protein -0.61 0.31 -0.3
18 AT5G64350 FK506-binding protein 12 ARABIDOPSIS THALIANA FK506-BINDING
PROTEIN 12, FK506-binding protein
12, FKP12		 -0.61 0.29 -0.31
19 AT1G24520 homolog of Brassica campestris pollen protein 1 homolog of Brassica campestris
pollen protein 1		 -0.61 0.3 -0.3
20 AT1G55530 RING/U-box superfamily protein -0.61 0.32 -0.3
21 AT3G52870 IQ calmodulin-binding motif family protein -0.6 0.35 -0.31
22 AT5G61190 putative endonuclease or glycosyl hydrolase with C2H2-type
zinc finger domain		 0.6 0.32 -0.32
23 AT1G21010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G76600.1); Has 206 Blast hits to 206 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.6 0.31 -0.31
24 AT1G66680 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 AR401 -0.6 0.31 -0.3
25 AT3G57340 Heat shock protein DnaJ, N-terminal with domain of unknown
function (DUF1977)		 -0.6 0.29 -0.3
26 AT1G74840 Homeodomain-like superfamily protein -0.6 0.29 -0.33
27 AT2G35110 transcription activators GNARLED, NCK-ASSOCIATED PROTEIN 1,
NAPP		 0.6 0.31 -0.31
28 AT3G05500 Rubber elongation factor protein (REF) -0.59 0.33 -0.33
29 AT2G03730 ACT domain repeat 5 ACT domain repeat 5 -0.59 0.32 -0.31
30 AT3G56590 hydroxyproline-rich glycoprotein family protein 0.59 0.3 -0.3
31 AT5G61760 inositol polyphosphate kinase 2 beta ARABIDOPSIS THALIANA INOSITOL
POLYPHOSPHATE KINASE 2 BETA,
INOSITOL POLYPHOSPHATE KINASE 2
BETA, inositol polyphosphate
kinase 2 beta		 -0.59 0.32 -0.33
32 AT2G04550 indole-3-butyric acid response 5 DUAL SPECIFICITY PROTEIN
PHOSPHATASE 1E, indole-3-butyric
acid response 5		 -0.59 0.3 -0.33
33 AT1G19120 Small nuclear ribonucleoprotein family protein -0.59 0.3 -0.32
34 AT4G05150 Octicosapeptide/Phox/Bem1p family protein -0.59 0.3 -0.33
35 AT3G12630 A20/AN1-like zinc finger family protein stress associated protein 5 -0.59 0.32 -0.3
36 AT5G27410 D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily protein		 0.58 0.32 -0.31
37 AT4G24440 transcription initiation factor IIA gamma chain /
TFIIA-gamma (TFIIA-S)		 -0.57 0.31 -0.32
38 AT4G02730 Transducin/WD40 repeat-like superfamily protein AtWDR5b, human WDR5 (WD40 repeat)
homolog b		 -0.57 0.31 -0.34
39 AT5G63510 gamma carbonic anhydrase like 1 gamma carbonic anhydrase like 1 -0.57 0.33 -0.31
40 AT5G35330 methyl-CPG-binding domain protein 02 ATMBD2, methyl-CPG-binding domain
protein 02, METHYL-CPG-BINDING
DOMAIN PROTEIN 2		 -0.56 0.3 -0.34
41 AT1G34190 NAC domain containing protein 17 NAC domain containing protein 17,
NAC domain containing protein 17		 -0.56 0.32 -0.33
42 AT1G67800 Copine (Calcium-dependent phospholipid-binding protein)
family		 -0.56 0.32 -0.31
43 AT2G42210 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 ATOEP16-3, OEP16-3 -0.56 0.31 -0.31
44 AT5G45750 RAB GTPase homolog A1C RAB GTPase homolog A1C, RAB GTPase
homolog A1C		 -0.55 0.28 -0.3
45 AT5G61250 glucuronidase 1 glucuronidase 1, glucuronidase 1 0.55 0.31 -0.33
46 AT4G27350 Protein of unknown function (DUF1223) -0.55 0.31 -0.34
47 AT1G12710 phloem protein 2-A12 phloem protein 2-A12, phloem
protein 2-A12		 -0.55 0.32 -0.31
48 AT1G23820 spermidine synthase 1 spermidine synthase 1 -0.55 0.32 -0.32
49 AT3G21280 ubiquitin-specific protease 7 ubiquitin-specific protease 7 -0.54 0.3 -0.32
50 AT1G68720 tRNA arginine adenosine deaminase ARABIDOPSIS THALIANA TRNA
ADENOSINE DEAMINASE A, tRNA
arginine adenosine deaminase		 0.54 0.31 -0.35
51 AT1G35210 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF740 (InterPro:IPR008004);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G22470.1); Has 83 Blast hits to 83 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.54 0.32 -0.32
52 AT5G35670 IQ-domain 33 IQ-domain 33 0.54 0.3 -0.32
53 AT1G75190 unknown protein; Has 7306 Blast hits to 3858 proteins in
279 species: Archae - 15; Bacteria - 134; Metazoa - 3314;
Fungi - 546; Plants - 228; Viruses - 207; Other Eukaryotes
- 2862 (source: NCBI BLink).		 -0.54 0.31 -0.33
54 AT3G47800 Galactose mutarotase-like superfamily protein -0.53 0.32 -0.3
55 AT3G13200 Cwf15 / Cwc15 cell cycle control family protein EMBRYO DEFECTIVE 2769 -0.53 0.32 -0.34
56 AT3G18030 HAL3-like protein A ATHAL3, ARABIDOPSIS THALIANA
HAL3-LIKE PROTEIN A, HALOTOLERANCE
DETERMINANT 3, HAL3-like protein A		 -0.53 0.3 -0.35
57 AT3G15970 NUP50 (Nucleoporin 50 kDa) protein -0.53 0.31 -0.34
58 AT3G18910 EIN2 targeting protein2 EIN2 targeting protein2 -0.53 0.34 -0.31
59 AT5G10450 G-box regulating factor 6 14-3-3 PROTEIN G-BOX FACTOR14
LAMBDA, AFT1, G-box regulating
factor 6		 -0.52 0.31 -0.3
60 AT2G03470 ELM2 domain-containing protein -0.52 0.31 -0.29
61 AT2G38450 CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G05360.1); Has 88 Blast hits to 88 proteins in 25
species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0;
Plants - 70; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.52 0.3 -0.33
62 AT3G05830 Encodes alpha-helical IF (intermediate filament)-like
protein.		 0.52 0.29 -0.33
63 AT4G33740 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G37820.1); Has 138210 Blast
hits to 73191 proteins in 2959 species: Archae - 732;
Bacteria - 18006; Metazoa - 48521; Fungi - 16820; Plants -
7078; Viruses - 1046; Other Eukaryotes - 46007 (source:
NCBI BLink).		 0.51 0.3 -0.31
64 AT3G54610 histone acetyltransferase of the GNAT family 1 BIG TOP, general control
non-repressible 5, HAC3, HAG01,
histone acetyltransferase of the
GNAT family 1, HISTONE
ACETYLTRANSFERASE 1		 0.51 0.32 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
65 C0063 Campesterol - Campesterol brassinosteroid biosynthesis I,
brassinosteroid biosynthesis II,
plant sterol biosynthesis,
brassinosteroid biosynthesis III 		0.73 0.46 -0.47 C0063
66 C0235 Sinapoyl malate Sinapoyl-(S)-malate Sinapoyl-(S)-malate sinapate ester biosynthesis 0.52 0.33 -0.3 C0235
67 C0249 Sulfoquinovosyldiacylglycerol-36:4 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis 0.52 0.33 -0.33 C0249