AT1G63780 : IMP4
Query Information
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AGICode AT1G63780
Description Ribosomal RNA processing Brix domain protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G63780 Ribosomal RNA processing Brix domain protein IMP4 1 0.31 -0.32
2 AT1G60850 DNA-directed RNA polymerase family protein AAC42, ATRPAC42 0.85 0.33 -0.31
3 AT1G63810 CONTAINS InterPro DOMAIN/s: Nrap protein
(InterPro:IPR005554); Has 396 Blast hits to 382 proteins in
182 species: Archae - 3; Bacteria - 2; Metazoa - 142; Fungi
- 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60
(source: NCBI BLink).		 0.81 0.31 -0.31
4 AT3G57940 Domain of unknown function (DUF1726) ;Putative ATPase
(DUF699)		 0.8 0.31 -0.33
5 AT5G49560 Putative methyltransferase family protein 0.8 0.32 -0.32
6 AT5G02790 Glutathione S-transferase family protein Glutathione transferase L3 -0.79 0.31 -0.3
7 AT1G59760 RNA helicase, ATP-dependent, SK12/DOB1 protein AtMTR4, homolog of yeast MTR4 0.79 0.31 -0.31
8 AT1G63660 GMP synthase (glutamine-hydrolyzing), putative / glutamine
amidotransferase, putative		 0.79 0.3 -0.31
9 AT1G31970 DEA(D/H)-box RNA helicase family protein STRESS RESPONSE SUPPRESSOR 1 0.79 0.33 -0.33
10 AT3G49890 unknown protein; Has 27 Blast hits to 27 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 0.78 0.33 -0.32
11 AT5G38720 unknown protein; Has 13419 Blast hits to 9093 proteins in
698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949;
Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes
- 5779 (source: NCBI BLink).		 0.77 0.3 -0.29
12 AT2G18220 Noc2p family 0.77 0.31 -0.34
13 AT3G02650 Tetratricopeptide repeat (TPR)-like superfamily protein 0.77 0.31 -0.31
14 AT1G08110 lactoylglutathione lyase family protein / glyoxalase I
family protein		 -0.77 0.34 -0.33
15 AT3G61590 Galactose oxidase/kelch repeat superfamily protein HS, HAWAIIAN SKIRT 0.77 0.3 -0.31
16 AT1G78890 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G16840.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.77 0.31 -0.31
17 AT1G76810 eukaryotic translation initiation factor 2 (eIF-2) family
protein		 0.76 0.32 -0.3
18 AT1G77550 tubulin-tyrosine ligases;tubulin-tyrosine ligases 0.76 0.3 -0.32
19 AT3G15080 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.76 0.32 -0.33
20 AT1G16480 Tetratricopeptide repeat (TPR)-like superfamily protein 0.76 0.3 -0.32
21 AT3G26740 CCR-like CCR-like -0.76 0.3 -0.32
22 AT4G19860 alpha/beta-Hydrolases superfamily protein -0.75 0.32 -0.31
23 AT1G48420 D-cysteine desulfhydrase 1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, A. THALIANA
1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, D-cysteine
desulfhydrase, D-cysteine
desulfhydrase		 -0.75 0.29 -0.3
24 AT4G31160 DDB1-CUL4 associated factor 1 DDB1-CUL4 associated factor 1 0.75 0.31 -0.3
25 AT2G34750 RNA polymerase I specific transcription initiation factor
RRN3 protein		 0.75 0.32 -0.3
26 AT5G43850 RmlC-like cupins superfamily protein ARD4, ATARD4 -0.74 0.33 -0.29
27 AT5G17270 Protein prenylyltransferase superfamily protein 0.74 0.33 -0.32
28 AT2G17580 Polynucleotide adenylyltransferase family protein 0.74 0.33 -0.31
29 AT5G67240 small RNA degrading nuclease 3 small RNA degrading nuclease 3 0.74 0.31 -0.32
30 AT3G52140 tetratricopeptide repeat (TPR)-containing protein 0.74 0.31 -0.34
31 AT1G48300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 96 Blast hits to 87
proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa -
12; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes -
15 (source: NCBI BLink).		 -0.74 0.31 -0.33
32 AT4G14930 Survival protein SurE-like phosphatase/nucleotidase -0.74 0.3 -0.31
33 AT1G14610 valyl-tRNA synthetase / valine--tRNA ligase (VALRS) TWIN 2, VALYL TRNA SYNTHETASE 0.74 0.35 -0.33
34 AT3G46210 Ribosomal protein S5 domain 2-like superfamily protein 0.74 0.3 -0.32
35 AT2G21710 Mitochondrial transcription termination factor family
protein		 embryo defective 2219 0.73 0.31 -0.31
36 AT1G49540 elongator protein 2 Elongator subunit 2, elongator
protein 2		 0.73 0.33 -0.32
37 AT5G52950 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.73 0.28 -0.3
38 AT2G17670 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.28 -0.3
39 AT5G52850 Pentatricopeptide repeat (PPR) superfamily protein 0.73 0.31 -0.32
40 AT1G04080 Tetratricopeptide repeat (TPR)-like superfamily protein PRP39 0.73 0.3 -0.33
41 AT5G36950 DegP protease 10 DegP protease 10 0.73 0.33 -0.33
42 AT2G41530 S-formylglutathione hydrolase ARABIDOPSIS THALIANA
S-FORMYLGLUTATHIONE HYDROLASE,
S-formylglutathione hydrolase		 -0.73 0.3 -0.31
43 AT4G21150 ribophorin II (RPN2) family protein HAPLESS 6 0.72 0.33 -0.33
44 AT1G76120 Pseudouridine synthase family protein 0.72 0.35 -0.32
45 AT3G09090 defective in exine formation protein (DEX1) DEFECTIVE IN EXINE FORMATION 1 0.72 0.32 -0.3
46 AT3G62310 RNA helicase family protein 0.72 0.32 -0.31
47 AT5G61960 MEI2-like protein 1 MEI2-like protein 1, MEI2-like
protein 1		 0.72 0.32 -0.31
48 AT5G08305 Pentatricopeptide repeat (PPR) superfamily protein 0.72 0.29 -0.32
49 AT1G48040 Protein phosphatase 2C family protein 0.72 0.32 -0.31
50 AT1G41797 transposable element gene -0.72 0.32 -0.32
51 AT4G38440 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: RNA polymerase II-associated protein 1,
C-terminal (InterPro:IPR013929), RNA polymerase
II-associated protein 1, N-terminal (InterPro:IPR013930);
Has 276 Blast hits to 220 proteins in 102 species: Archae -
0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41;
Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).		 MINIYO 0.71 0.3 -0.31
52 AT4G12750 Homeodomain-like transcriptional regulator 0.71 0.32 -0.33
53 AT5G56950 nucleosome assembly protein 1;3 nucleosome assembly protein 1;3,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 03,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A3		 0.71 0.31 -0.3
54 AT5G62600 ARM repeat superfamily protein modifier of snc1-1, 14 0.71 0.31 -0.31
55 AT5G60960 Pentatricopeptide repeat (PPR) superfamily protein PPR protein localized to the
nucleus and mitochondria 1		 0.71 0.33 -0.31
56 AT3G45770 Polyketide synthase, enoylreductase family protein -0.71 0.32 -0.32
57 AT2G36480 ENTH/VHS family protein 0.71 0.3 -0.32
58 AT3G44330 INVOLVED IN: protein processing; LOCATED IN: mitochondrion,
endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED
IN: 25 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Nicalin
(InterPro:IPR016574), EF-Hand 1, calcium-binding site
(InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has
245 Blast hits to 243 proteins in 99 species: Archae - 6;
Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.71 0.31 -0.33
59 AT3G44530 homolog of histone chaperone HIRA homolog of histone chaperone HIRA 0.71 0.3 -0.31
60 AT4G29420 F-box/RNI-like superfamily protein -0.71 0.33 -0.3
61 AT3G15840 post-illumination chlorophyll fluorescence increase post-illumination chlorophyll
fluorescence increase		 -0.7 0.31 -0.32
62 AT2G42750 DNAJ heat shock N-terminal domain-containing protein -0.7 0.3 -0.32
63 AT3G47160 RING/U-box superfamily protein -0.7 0.3 -0.31
64 AT3G21360 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.7 0.33 -0.31
65 AT3G57650 lysophosphatidyl acyltransferase 2 lysophosphatidyl acyltransferase 2 0.7 0.31 -0.34
66 AT3G59020 ARM repeat superfamily protein 0.7 0.3 -0.32
67 AT3G22980 Ribosomal protein S5/Elongation factor G/III/V family
protein		 0.7 0.33 -0.29
68 AT1G74820 RmlC-like cupins superfamily protein 0.7 0.32 -0.32
69 AT1G23130 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.7 0.33 -0.31
70 AT1G55820 Kinase-related protein of unknown function (DUF1296) 0.7 0.31 -0.3
71 AT3G43630 Vacuolar iron transporter (VIT) family protein 0.7 0.3 -0.3
72 AT4G13830 DNAJ-like 20 DNAJ-like 20 -0.69 0.31 -0.31
73 AT4G27470 RING membrane-anchor 3 ATRMA3, RING membrane-anchor 3 -0.69 0.31 -0.31
74 AT1G49150 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.69 0.3 -0.31
75 AT5G17520 root cap 1 (RCP1) MALTOSE EXCESS 1, ROOT CAP 1 -0.69 0.31 -0.31
76 AT5G66130 RADIATION SENSITIVE 17 RADIATION SENSITIVE 17, RADIATION
SENSITIVE 17		 0.69 0.31 -0.31
77 AT5G23240 DNAJ heat shock N-terminal domain-containing protein -0.69 0.33 -0.32
78 AT2G24640 ubiquitin-specific protease 19 ubiquitin-specific protease 19 0.69 0.31 -0.33
79 AT1G79380 Ca(2)-dependent phospholipid-binding protein (Copine)
family		 -0.68 0.29 -0.3
80 AT4G20410 gamma-soluble NSF attachment protein GAMMA-SOLUBLE NSF ATTACHMENT
PROTEIN, gamma-soluble NSF
attachment protein		 -0.68 0.32 -0.35
81 AT1G17790 DNA-binding bromodomain-containing protein -0.68 0.32 -0.33
82 AT3G47850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 12 growth stages; Has 57 Blast hits to 57 proteins
in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12;
Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7
(source: NCBI BLink).		 -0.68 0.31 -0.32
83 AT5G02310 proteolysis 6 proteolysis 6 -0.68 0.3 -0.33
84 AT2G40600 appr-1-p processing enzyme family protein -0.67 0.33 -0.3
85 AT2G15960 unknown protein; Has 14 Blast hits to 14 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.67 0.3 -0.31
86 AT3G21660 UBX domain-containing protein -0.67 0.29 -0.33
87 AT2G27290 Protein of unknown function (DUF1279) -0.67 0.31 -0.33
88 AT1G12680 phosphoenolpyruvate carboxylase-related kinase 2 phosphoenolpyruvate
carboxylase-related kinase 2		 -0.67 0.28 -0.32
89 AT3G10940 dual specificity protein phosphatase (DsPTP1) family
protein		 LIKE SEX4 2 -0.66 0.33 -0.31
90 AT1G69390 homologue of bacterial MinE 1 accumulation and replication of
chloroplasts 12, homologue of
bacterial MinE 1, homologue of
bacterial MinE 1		 -0.66 0.31 -0.3
91 AT4G32560 paramyosin-related -0.66 0.3 -0.3
92 AT4G38090 Ribosomal protein S5 domain 2-like superfamily protein -0.66 0.32 -0.31
93 AT2G15695 Protein of unknown function DUF829, transmembrane 53 -0.66 0.3 -0.29
94 AT5G65590 Dof-type zinc finger DNA-binding family protein -0.66 0.32 -0.31
95 AT1G05060 unknown protein; Has 34 Blast hits to 34 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.66 0.34 -0.34
96 AT5G07250 RHOMBOID-like protein 3 RHOMBOID-like protein 3,
RHOMBOID-like protein 3		 -0.66 0.3 -0.31
97 AT2G42950 Magnesium transporter CorA-like family protein -0.66 0.3 -0.32
98 AT4G29070 Phospholipase A2 family protein -0.65 0.29 -0.3
99 AT1G55300 TBP-associated factor 7 TBP-associated factor 7 -0.65 0.31 -0.31
100 AT4G00355 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits
to 97 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 ATG8-interacting protein 2 -0.65 0.3 -0.33
101 AT5G41210 glutathione S-transferase THETA 1 glutathione S-transferase THETA 1,
GST10, glutathione S-transferase
THETA 1		 -0.65 0.33 -0.3
102 AT2G31040 ATP synthase protein I -related -0.65 0.32 -0.31
103 AT4G07540 transposable element gene -0.65 0.32 -0.3
104 AT1G77990 STAS domain / Sulfate transporter family AST56, SULPHATE TRANSPORTER 2;2 -0.65 0.29 -0.3
105 AT1G11940 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.65 0.33 -0.3
106 AT1G73470 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 72 Blast hits to 72 proteins
in 35 species: Archae - 0; Bacteria - 50; Metazoa - 0;
Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.65 0.3 -0.32
107 AT5G62610 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.65 0.31 -0.32
108 AT1G76660 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in
60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi -
22; Plants - 125; Viruses - 4; Other Eukaryotes - 139
(source: NCBI BLink).		 -0.64 0.32 -0.31
109 AT4G16780 homeobox protein 2 homeobox protein 2, ARABIDOPSIS
THALIANA HOMEOBOX PROTEIN 2, HAT4,
homeobox protein 2		 -0.64 0.31 -0.33
110 AT2G14110 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.64 0.31 -0.3
111 AT1G12550 D-isomer specific 2-hydroxyacid dehydrogenase family
protein		 hydroxypyruvate reductase 3 -0.64 0.32 -0.33
112 AT1G79870 D-isomer specific 2-hydroxyacid dehydrogenase family
protein		 -0.63 0.31 -0.32
113 AT5G54520 Transducin/WD40 repeat-like superfamily protein -0.63 0.31 -0.32
114 AT1G76020 Thioredoxin superfamily protein -0.63 0.31 -0.31
115 AT1G68260 Thioesterase superfamily protein -0.63 0.32 -0.32
116 AT5G26120 alpha-L-arabinofuranosidase 2 alpha-L-arabinofuranosidase 2,
ARABIDOPSIS THALIANA
ALPHA-L-ARABINOFURANOSIDASE 2		 -0.63 0.33 -0.34
117 AT3G53350 ROP interactive partner 4 ROP interactive partner 4 -0.63 0.3 -0.32
118 AT3G17770 Dihydroxyacetone kinase -0.63 0.31 -0.32
119 AT5G49500 Signal recognition particle, SRP54 subunit protein -0.62 0.3 -0.31
120 AT1G67890 PAS domain-containing protein tyrosine kinase family
protein		 -0.62 0.31 -0.32
121 AT4G30630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G57910.1); Has 33 Blast hits
to 33 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.33 -0.31
122 AT3G18035 winged-helix DNA-binding transcription factor family
protein		 HON4 -0.62 0.3 -0.33
123 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 -0.62 0.31 -0.29
124 AT1G75930 extracellular lipase 6 extracellular lipase 6 -0.62 0.33 -0.31
125 AT5G06020 Plant self-incompatibility protein S1 family -0.62 0.32 -0.3
126 AT5G41340 ubiquitin conjugating enzyme 4 UBIQUITIN CONJUGATING ENZYME 4,
ubiquitin conjugating enzyme 4		 -0.62 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
127 C0198 Phosphatidylethanolamine-34:0 - - - 0.74 0.46 -0.43
128 C0018 sn-Glycerol-3-phosphate D,L-sn-Glycerol-3-phosphate sn-Glycerol-3-phosphate CDP-diacylglycerol biosynthesis II,
phosphatidylglycerol biosynthesis II (non-plastidic),
triacylglycerol biosynthesis,
glycerol degradation IV,
glycerol-3-phosphate shuttle,
a quinone + sn-glycerol-3-phosphate -> a quinol + dihydroxyacetone phosphate,
CDP-diacylglycerol biosynthesis I,
cardiolipin biosynthesis II,
phosphatidylglycerol biosynthesis I (plastidic),
sn-glycerol-3-phosphate + a ubiquinone -> a ubiquinol + dihydroxyacetone phosphate,
an electron-transfer-related quinone + sn-glycerol-3-phosphate -> an electron-transfer-related quinol + dihydroxyacetone phosphate 		-0.69 0.48 -0.46 C0018
129 C0172 MST_2214.3 - - - -0.63 0.45 -0.42