AT1G69935 : SHORT HYPOCOTYL IN WHITE LIGHT1
Query Information
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AGICode AT1G69935
Description short hypocotyl in white light1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G69935 short hypocotyl in white light1 SHORT HYPOCOTYL IN WHITE LIGHT1 1 0.33 -0.35
2 AT1G68660 Ribosomal protein L12/ ATP-dependent Clp protease adaptor
protein ClpS family protein		 0.9 0.32 -0.32
3 AT1G12250 Pentapeptide repeat-containing protein 0.87 0.33 -0.3
4 AT1G23400 RNA-binding CRS1 / YhbY (CRM) domain-containing protein ARABIDOPSIS THALIANA HOMOLOG OF
MAIZE CAF2, CAF2		 0.87 0.32 -0.29
5 AT1G31190 myo-inositol monophosphatase like 1 myo-inositol monophosphatase like
1		 0.86 0.33 -0.32
6 AT1G26220 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.86 0.33 -0.32
7 AT4G37200 Thioredoxin superfamily protein HIGH CHLOROPHYLL FLUORESCENCE 164 0.86 0.31 -0.33
8 AT1G18170 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.85 0.32 -0.32
9 AT3G02690 nodulin MtN21 /EamA-like transporter family protein 0.84 0.31 -0.3
10 AT4G25910 NFU domain protein 3 ATCNFU3, NFU domain protein 3 0.84 0.31 -0.31
11 AT2G26340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast thylakoid
lumen, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38
proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.83 0.33 -0.31
12 AT2G35450 catalytics;hydrolases 0.83 0.31 -0.32
13 AT1G01170 Protein of unknown function (DUF1138) 0.83 0.32 -0.34
14 AT5G03430 phosphoadenosine phosphosulfate (PAPS) reductase family
protein		 0.83 0.32 -0.31
15 AT4G28030 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.82 0.32 -0.32
16 AT3G27050 unknown protein; Has 43 Blast hits to 43 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 0.82 0.3 -0.32
17 AT2G03550 alpha/beta-Hydrolases superfamily protein 0.82 0.32 -0.31
18 AT4G35760 NAD(P)H dehydrogenase (quinone)s 0.82 0.33 -0.32
19 AT5G48590 Protein of unknown function (DUF760) 0.82 0.35 -0.31
20 AT1G66890 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
50S ribosomal protein-related (TAIR:AT5G16200.1); Has 36
Blast hits to 36 proteins in 7 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.81 0.32 -0.31
21 AT1G43670 Inositol monophosphatase family protein Arabidopsis thaliana cytosolic
fructose-1,6-bisphosphatase,
fructose-1,6-bisphosphatase,
FRUCTOSE INSENSITIVE 1		 0.81 0.31 -0.32
22 AT4G31530 NAD(P)-binding Rossmann-fold superfamily protein 0.81 0.28 -0.32
23 AT2G35450 catalytics;hydrolases 0.81 0.31 -0.33
24 AT3G62000 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.81 0.32 -0.3
25 AT4G15930 Dynein light chain type 1 family protein 0.81 0.29 -0.31
26 AT1G45474 photosystem I light harvesting complex gene 5 photosystem I light harvesting
complex gene 5		 0.81 0.31 -0.31
27 AT1G10360 glutathione S-transferase TAU 18 glutathione S-transferase TAU 18,
GLUTATHIONE S-TRANSFERASE 29,
glutathione S-transferase TAU 18		 0.81 0.32 -0.32
28 AT1G34640 peptidases 0.81 0.32 -0.31
29 AT1G69390 homologue of bacterial MinE 1 accumulation and replication of
chloroplasts 12, homologue of
bacterial MinE 1, homologue of
bacterial MinE 1		 0.8 0.3 -0.34
30 AT5G22830 magnesium (Mg) transporter 10 magnesium (Mg) transporter 10,
GMN10, magnesium (Mg) transporter
10, MAGNESIUM TRANSPORTER 10,
MRS2-11		 0.8 0.32 -0.33
31 AT5G16940 carbon-sulfur lyases 0.79 0.31 -0.31
32 AT1G32070 nuclear shuttle interacting nuclear shuttle interacting,
nuclear shuttle interacting		 0.79 0.3 -0.31
33 AT1G01860 Ribosomal RNA adenine dimethylase family protein PALEFACE 1 0.79 0.32 -0.33
34 AT3G29240 Protein of unknown function (DUF179) 0.79 0.31 -0.34
35 AT4G15545 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G16520.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.79 0.31 -0.32
36 AT5G58330 lactate/malate dehydrogenase family protein 0.79 0.3 -0.32
37 AT3G09250 Nuclear transport factor 2 (NTF2) family protein 0.79 0.34 -0.32
38 AT3G29310 calmodulin-binding protein-related -0.79 0.31 -0.31
39 AT1G23740 Oxidoreductase, zinc-binding dehydrogenase family protein alkenal/one oxidoreductase 0.79 0.3 -0.29
40 AT3G17930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF3007
(InterPro:IPR021562); Has 236 Blast hits to 236 proteins in
83 species: Archae - 0; Bacteria - 117; Metazoa - 0; Fungi
- 0; Plants - 39; Viruses - 0; Other Eukaryotes - 80
(source: NCBI BLink).		 0.79 0.31 -0.3
41 AT5G18100 copper/zinc superoxide dismutase 3 copper/zinc superoxide dismutase 3 0.78 0.31 -0.31
42 AT3G20790 NAD(P)-binding Rossmann-fold superfamily protein 0.78 0.31 -0.33
43 AT1G56190 Phosphoglycerate kinase family protein 0.78 0.31 -0.29
44 AT2G45740 peroxin 11D peroxin 11D 0.78 0.33 -0.32
45 AT4G19830 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.78 0.3 -0.31
46 AT1G76730 NagB/RpiA/CoA transferase-like superfamily protein 0.78 0.34 -0.3
47 AT2G21970 stress enhanced protein 2 stress enhanced protein 2 0.78 0.31 -0.34
48 AT5G24165 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G23885.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.78 0.3 -0.3
49 AT5G63930 Leucine-rich repeat protein kinase family protein -0.78 0.33 -0.3
50 AT5G16750 Transducin family protein / WD-40 repeat family protein TORMOZEMBRYO DEFECTIVE -0.78 0.32 -0.32
51 AT1G23360 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 MENG 0.77 0.3 -0.34
52 AT5G62140 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 13 growth stages; Has 60 Blast hits to 60 proteins
in 24 species: Archae - 0; Bacteria - 14; Metazoa - 0;
Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.77 0.31 -0.32
53 AT3G19000 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.77 0.29 -0.31
54 AT5G02240 NAD(P)-binding Rossmann-fold superfamily protein 0.77 0.31 -0.31
55 AT3G21760 UDP-Glycosyltransferase superfamily protein HYPOSTATIN RESISTANCE 1 0.77 0.34 -0.31
56 AT3G51420 strictosidine synthase-like 4 STRICTOSIDINE SYNTHASE-LIKE 4,
strictosidine synthase-like 4		 0.77 0.32 -0.31
57 AT3G52155 Phosphoglycerate mutase family protein 0.77 0.3 -0.31
58 AT2G01110 Sec-independent periplasmic protein translocase ALBINO AND PALE GREEN 2, PGA2,
TWIN-ARGININE TRANSLOCATION C,
unfertilized embryo sac 3		 0.77 0.33 -0.31
59 AT4G10920 transcriptional coactivator p15 (PC4) family protein (KELP) KELP 0.76 0.34 -0.32
60 AT4G10000 Thioredoxin family protein 0.76 0.33 -0.31
61 AT2G33255 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.76 0.32 -0.32
62 AT2G02410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF901 (InterPro:IPR010298); Has 1151
Blast hits to 1151 proteins in 597 species: Archae - 0;
Bacteria - 1105; Metazoa - 0; Fungi - 0; Plants - 42;
Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.76 0.31 -0.32
63 AT4G27710 cytochrome P450, family 709, subfamily B, polypeptide 3 cytochrome P450, family 709,
subfamily B, polypeptide 3		 0.76 0.3 -0.32
64 AT3G19800 Protein of unknown function (DUF177) 0.76 0.29 -0.32
65 AT1G35340 ATP-dependent protease La (LON) domain protein 0.76 0.32 -0.3
66 AT1G60010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in
18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.75 0.34 -0.33
67 AT1G04350 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.75 0.31 -0.31
68 AT4G37300 maternal effect embryo arrest 59 maternal effect embryo arrest 59 0.75 0.34 -0.32
69 AT1G50170 sirohydrochlorin ferrochelatase B sirohydrochlorin ferrochelatase B,
sirohydrochlorin ferrochelatase B		 0.75 0.32 -0.3
70 AT5G45170 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.75 0.32 -0.32
71 AT2G04700 ferredoxin thioredoxin reductase catalytic beta chain
family protein		 0.75 0.3 -0.31
72 AT5G38360 alpha/beta-Hydrolases superfamily protein 0.75 0.31 -0.31
73 AT5G52420 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G23920.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.75 0.33 -0.31
74 AT3G10970 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.75 0.32 -0.31
75 AT3G17470 Ca2+-activated RelA/spot homolog ATCRSH, Ca2+-activated RelA/spot
homolog		 0.75 0.3 -0.33
76 AT2G39110 Protein kinase superfamily protein -0.72 0.33 -0.31
77 AT5G58210 hydroxyproline-rich glycoprotein family protein -0.72 0.31 -0.3
78 AT3G03050 cellulose synthase-like D3 CELLULOSE SYNTHASE LIKE D3,
cellulose synthase-like D3, KOJAK,
ROOT HAIR DEFECTIVE 7		 -0.71 0.29 -0.31
79 AT2G28450 zinc finger (CCCH-type) family protein -0.69 0.33 -0.31
80 AT1G17500 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.69 0.33 -0.3
81 AT1G55500 evolutionarily conserved C-terminal region 4 evolutionarily conserved
C-terminal region 4		 -0.68 0.3 -0.29
82 AT1G06780 galacturonosyltransferase 6 galacturonosyltransferase 6 -0.67 0.32 -0.34
83 AT1G11390 Protein kinase superfamily protein -0.66 0.31 -0.3
84 AT4G03430 pre-mRNA splicing factor-related EMBRYO DEFECTIVE 2770, STABILIZED
1		 -0.66 0.3 -0.3
85 AT1G53200 unknown protein; Has 21 Blast hits to 21 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.66 0.3 -0.32
86 AT5G02820 Spo11/DNA topoisomerase VI, subunit A protein BRASSINOSTEROID INSENSITIVE 5,
ROOT HAIRLESS 2		 -0.65 0.32 -0.31
87 AT4G15230 pleiotropic drug resistance 2 ATP-binding cassette G30, ATPDR2,
pleiotropic drug resistance 2		 -0.65 0.32 -0.32
88 AT2G47460 myb domain protein 12 MYB DOMAIN PROTEIN 12, myb domain
protein 12, PRODUCTION OF FLAVONOL
GLYCOSIDES 1		 -0.64 0.3 -0.33
89 AT5G45070 phloem protein 2-A8 phloem protein 2-A8, phloem
protein 2-A8		 -0.64 0.31 -0.31
90 AT1G26660 Prefoldin chaperone subunit family protein -0.64 0.31 -0.32
91 AT2G39300 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: vacuole; EXPRESSED IN: 8 plant structures;
EXPRESSED DURING: 4 anthesis, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G55060.1); Has 46416 Blast
hits to 28308 proteins in 1743 species: Archae - 734;
Bacteria - 4822; Metazoa - 24446; Fungi - 3539; Plants -
2267; Viruses - 163; Other Eukaryotes - 10445 (source: NCBI
BLink).		 -0.64 0.32 -0.33
92 AT3G25655 inflorescence deficient in abscission (IDA)-like 1 inflorescence deficient in
abscission (IDA)-like 1		 -0.63 0.3 -0.32
93 AT3G24440 Fibronectin type III domain-containing protein VIN3-LIKE 1, VERNALIZATION 5 -0.63 0.33 -0.32
94 AT2G03880 Pentatricopeptide repeat (PPR) superfamily protein required for efficiency of
mitochondrial editing 1		 -0.63 0.31 -0.3
95 AT3G62240 RING/U-box superfamily protein -0.63 0.29 -0.32
96 AT2G02160 CCCH-type zinc finger family protein -0.63 0.31 -0.34
97 AT2G18200 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT2G18210.1); Has 19 Blast hits to 19
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.62 0.31 -0.31
98 AT1G52950 Nucleic acid-binding, OB-fold-like protein -0.62 0.33 -0.32
99 AT4G39550 Galactose oxidase/kelch repeat superfamily protein -0.62 0.29 -0.31
100 AT5G62190 DEAD box RNA helicase (PRH75) PRH75 -0.62 0.32 -0.3
101 AT3G27510 Cysteine/Histidine-rich C1 domain family protein -0.62 0.32 -0.32
102 AT4G35520 MUTL protein homolog 3 ATMLH3, MUTL protein homolog 3 -0.61 0.34 -0.31
103 AT5G09840 Putative endonuclease or glycosyl hydrolase -0.61 0.31 -0.32
104 AT1G51640 exocyst subunit exo70 family protein G2 exocyst subunit exo70 family
protein G2, exocyst subunit exo70
family protein G2		 -0.61 0.31 -0.33
105 AT2G35770 serine carboxypeptidase-like 28 serine carboxypeptidase-like 28 -0.61 0.33 -0.31
106 AT3G22600 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.61 0.31 -0.3
107 AT5G23630 phosphate deficiency response 2 MALE GAMETOGENESIS IMPAIRED
ANTHERS, phosphate deficiency
response 2, PI DEFICIENCY RESPONSE
2		 -0.61 0.31 -0.33
108 AT3G26980 membrane-anchored ubiquitin-fold protein 4 precursor membrane-anchored ubiquitin-fold
protein 4 precursor		 -0.61 0.35 -0.31
109 AT1G76760 thioredoxin Y1 thioredoxin Y1, THIOREDOXIN Y1,
thioredoxin Y1		 -0.6 0.32 -0.31
110 AT1G14390 Leucine-rich repeat protein kinase family protein -0.6 0.34 -0.33
111 AT2G16485 nucleic acid binding;zinc ion binding;DNA binding -0.6 0.31 -0.31
112 AT1G30080 Glycosyl hydrolase superfamily protein -0.6 0.29 -0.33
113 AT4G37940 AGAMOUS-like 21 AGAMOUS-like 21 -0.6 0.3 -0.32
114 AT2G32730 26S proteasome regulatory complex, non-ATPase subcomplex,
Rpn2/Psmd1 subunit		 -0.59 0.32 -0.33
115 AT1G27770 autoinhibited Ca2+-ATPase 1 autoinhibited Ca2+-ATPase 1,
PLASTID ENVELOPE ATPASE 1		 -0.59 0.31 -0.32
116 AT4G39720 VQ motif-containing protein -0.59 0.31 -0.33
117 AT5G45140 nuclear RNA polymerase C2 nuclear RNA polymerase C2 -0.59 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
118 C0241 Stigmasterol 3-O-β-D-glucoside - Stigmasterol 3-O-β-D-glucoside - -0.8 0.44 -0.47 C0241