AT2G41720 : EMBRYO DEFECTIVE 2654
Query Information
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AGICode AT2G41720
Description Tetratricopeptide repeat (TPR)-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G41720 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 2654 1 0.31 -0.28
2 AT2G17240 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G24506.1); Has 2795
Blast hits to 943 proteins in 155 species: Archae - 0;
Bacteria - 388; Metazoa - 809; Fungi - 72; Plants - 153;
Viruses - 54; Other Eukaryotes - 1319 (source: NCBI BLink).		 0.93 0.31 -0.31
3 AT5G36170 high chlorophyll fluorescent 109 ATPRFB, high chlorophyll
fluorescent 109		 0.9 0.3 -0.31
4 AT1G49380 cytochrome c biogenesis protein family 0.9 0.31 -0.28
5 AT1G17850 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.9 0.33 -0.33
6 AT1G60550 enoyl-CoA hydratase/isomerase D DHNS, enoyl-CoA
hydratase/isomerase D		 0.89 0.3 -0.3
7 AT3G58140 phenylalanyl-tRNA synthetase class IIc family protein 0.89 0.32 -0.33
8 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.88 0.31 -0.31
9 AT3G29185 Domain of unknown function (DUF3598) 0.88 0.33 -0.3
10 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.88 0.31 -0.31
11 AT2G37450 nodulin MtN21 /EamA-like transporter family protein 0.87 0.32 -0.3
12 AT3G18680 Amino acid kinase family protein 0.87 0.33 -0.32
13 AT2G17972 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 14 growth stages;
Has 34 Blast hits to 34 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.87 0.32 -0.31
14 AT4G24810 Protein kinase superfamily protein 0.86 0.29 -0.32
15 AT3G10160 DHFS-FPGS homolog C A. THALIANA DHFS-FPGS HOMOLOG C,
DHFS-FPGS homolog C,
folylpolyglutamate synthetase 2		 0.86 0.33 -0.3
16 AT3G02450 cell division protein ftsH, putative 0.86 0.34 -0.27
17 AT1G44000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G11911.1); Has 216 Blast hits
to 212 proteins in 76 species: Archae - 0; Bacteria - 96;
Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 0.86 0.32 -0.29
18 AT5G26820 iron-regulated protein 3 iron-regulated protein 3, IRON
REGULATED 3, iron-regulated
protein 3, MULTIPLE ANTIBIOTIC
RESISTANCE 1, RTS3		 0.86 0.31 -0.32
19 AT3G60620 cytidinediphosphate diacylglycerol synthase 5 cytidinediphosphate diacylglycerol
synthase 5		 0.85 0.34 -0.33
20 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.85 0.34 -0.3
21 AT1G23360 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 MENG 0.85 0.31 -0.3
22 AT3G25660 Amidase family protein 0.85 0.33 -0.32
23 AT1G74070 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.85 0.31 -0.34
24 AT1G10522 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 24 Blast hits to 24 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.85 0.31 -0.35
25 AT2G32765 small ubiquitinrelated modifier 5 ATSUMO5, SUMO 5, small
ubiquitinrelated modifier 5		 0.85 0.3 -0.33
26 AT4G28080 Tetratricopeptide repeat (TPR)-like superfamily protein 0.85 0.32 -0.34
27 AT5G22640 MORN (Membrane Occupation and Recognition Nexus)
repeat-containing protein		 embryo defective 1211 0.85 0.34 -0.3
28 AT2G47590 photolyase/blue-light receptor 2 photolyase/blue-light receptor 2 0.85 0.3 -0.32
29 AT2G21385 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.85 0.31 -0.31
30 AT4G19985 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.84 0.29 -0.28
31 AT5G13140 Pollen Ole e 1 allergen and extensin family protein 0.84 0.3 -0.31
32 AT3G48110 glycine-tRNA ligases EDD, EMBRYO-DEFECTIVE-DEVELOPMENT
1		 0.84 0.31 -0.31
33 AT2G15820 endonucleases ORGANELLE TRANSCRIPT PROCESSING 51 0.84 0.33 -0.34
34 AT5G66520 Tetratricopeptide repeat (TPR)-like superfamily protein 0.84 0.32 -0.32
35 AT5G42765 INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine
translocation pathway, signal sequence
(InterPro:IPR006311); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.83 0.31 -0.31
36 AT2G35155 Trypsin family protein 0.83 0.3 -0.31
37 AT2G20020 RNA-binding CRS1 / YhbY (CRM) domain-containing protein ATCAF1, CAF1 0.83 0.31 -0.31
38 AT3G53170 Tetratricopeptide repeat (TPR)-like superfamily protein 0.83 0.33 -0.32
39 AT3G51870 Mitochondrial substrate carrier family protein 0.83 0.31 -0.31
40 AT3G23760 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: vacuole; EXPRESSED
IN: 20 plant structures; EXPRESSED DURING: 13 growth
stages; BEST Arabidopsis thaliana protein match is:
transferases, transferring glycosyl groups
(TAIR:AT4G14100.1); Has 108 Blast hits to 104 proteins in
19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi -
0; Plants - 90; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).		 0.83 0.31 -0.3
41 AT3G26570 phosphate transporter 2;1 ORF02, phosphate transporter 2;1 0.83 0.31 -0.31
42 AT3G05410 Photosystem II reaction center PsbP family protein 0.83 0.33 -0.29
43 AT4G32570 TIFY domain protein 8 TIFY domain protein 8 0.83 0.31 -0.31
44 AT3G23070 CRM family member 3A ATCFM3A, CRM family member 3A 0.83 0.34 -0.29
45 AT4G30825 Tetratricopeptide repeat (TPR)-like superfamily protein 0.83 0.3 -0.31
46 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 0.83 0.33 -0.29
47 AT3G59840 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 72
Blast hits to 72 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.83 0.32 -0.32
48 AT5G17230 PHYTOENE SYNTHASE PHYTOENE SYNTHASE 0.83 0.29 -0.31
49 AT3G11750 Dihydroneopterin aldolase FOLB1 0.82 0.32 -0.33
50 AT1G79720 Eukaryotic aspartyl protease family protein 0.82 0.33 -0.33
51 AT5G02710 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0153 (InterPro:IPR005358); Has 240 Blast hits to 240
proteins in 73 species: Archae - 10; Bacteria - 110;
Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other
Eukaryotes - 95 (source: NCBI BLink).		 0.82 0.31 -0.32
52 AT1G23400 RNA-binding CRS1 / YhbY (CRM) domain-containing protein ARABIDOPSIS THALIANA HOMOLOG OF
MAIZE CAF2, CAF2		 0.82 0.3 -0.32
53 AT4G12970 stomagen EPFL9, STOMAGEN 0.82 0.32 -0.34
54 AT4G39120 myo-inositol monophosphatase like 2 HISTIDINE BIOSYNTHESIS 7,
myo-inositol monophosphatase like
2		 0.81 0.3 -0.31
55 AT1G64430 Pentatricopeptide repeat (PPR) superfamily protein 0.81 0.32 -0.31
56 AT3G12080 GTP-binding family protein embryo defective 2738 0.81 0.32 -0.31
57 AT4G31040 CemA-like proton extrusion protein-related 0.81 0.3 -0.32
58 AT1G30520 acyl-activating enzyme 14 acyl-activating enzyme 14 0.81 0.3 -0.31
59 AT2G25840 Nucleotidylyl transferase superfamily protein ovule abortion 4 0.81 0.35 -0.31
60 AT3G22150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.81 0.35 -0.33
61 AT4G33000 calcineurin B-like protein 10 ATCBL10, calcineurin B-like
protein 10, SOS3-LIKE CALCIUM
BINDING PROTEIN 8		 0.81 0.32 -0.31
62 AT5G04810 pentatricopeptide (PPR) repeat-containing protein 0.81 0.3 -0.31
63 AT1G62570 flavin-monooxygenase glucosinolate S-oxygenase 4 flavin-monooxygenase glucosinolate
S-oxygenase 4		 -0.8 0.31 -0.3
64 AT3G13310 Chaperone DnaJ-domain superfamily protein -0.78 0.32 -0.31
65 AT1G77000 RNI-like superfamily protein ARABIDOPSIS HOMOLOG OF HOMOLOG OF
HUMAN SKP2 2, SKP2B		 -0.76 0.32 -0.31
66 AT4G31420 Zinc finger protein 622 -0.75 0.33 -0.33
67 AT3G19910 RING/U-box superfamily protein -0.75 0.31 -0.31
68 AT1G50570 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.74 0.31 -0.33
69 AT5G06860 polygalacturonase inhibiting protein 1 POLYGALACTURONASE INHIBITING
PROTEIN 1, polygalacturonase
inhibiting protein 1		 -0.73 0.3 -0.33
70 AT1G62990 KNOTTED-like homeobox of Arabidopsis thaliana 7 IXR11, KNOTTED-like homeobox of
Arabidopsis thaliana 7		 -0.72 0.29 -0.3
71 AT5G23850 Arabidopsis thaliana protein of unknown function (DUF821) -0.72 0.31 -0.32
72 AT5G20830 sucrose synthase 1 ASUS1, atsus1, sucrose synthase 1 -0.72 0.3 -0.31
73 AT4G31500 cytochrome P450, family 83, subfamily B, polypeptide 1 ALTERED TRYPTOPHAN REGULATION 4,
cytochrome P450, family 83,
subfamily B, polypeptide 1, RED
ELONGATED 1, RUNT 1, SUPERROOT 2		 -0.71 0.32 -0.32
74 AT2G30130 Lateral organ boundaries (LOB) domain family protein ASL5, LBD12, PEACOCK 1 -0.71 0.33 -0.32
75 AT1G77120 alcohol dehydrogenase 1 ALCOHOL DEHYDROGENASE, alcohol
dehydrogenase 1, ARABIDOPSIS
THALIANA ALCOHOL DEHYDROGENASE,
ATADH1		 -0.71 0.31 -0.3
76 AT2G27200 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.7 0.31 -0.31
77 AT3G48850 phosphate transporter 3;2 phosphate transporter 3;2 -0.7 0.32 -0.34
78 AT4G35110 Arabidopsis phospholipase-like protein (PEARLI 4) family -0.69 0.32 -0.33
79 AT4G30600 signal recognition particle receptor alpha subunit family
protein		 -0.68 0.32 -0.3
80 AT1G76970 Target of Myb protein 1 -0.68 0.33 -0.31
81 AT5G67310 cytochrome P450, family 81, subfamily G, polypeptide 1 cytochrome P450, family 81,
subfamily G, polypeptide 1		 -0.68 0.31 -0.32
82 AT3G26440 Protein of unknown function (DUF707) -0.68 0.3 -0.29
83 AT5G17490 RGA-like protein 3 AtRGL3, RGA-like protein 3 -0.68 0.32 -0.33
84 AT2G29070 Ubiquitin fusion degradation UFD1 family protein -0.67 0.33 -0.31
85 AT1G25280 tubby like protein 10 tubby like protein 10, tubby like
protein 10		 -0.67 0.32 -0.32
86 AT5G12270 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.67 0.32 -0.31
87 AT3G50970 dehydrin family protein LOW TEMPERATURE-INDUCED 30, XERO2 -0.67 0.31 -0.32
88 AT5G14130 Peroxidase superfamily protein -0.67 0.32 -0.31
89 AT5G58700 phosphatidylinositol-speciwc phospholipase C4 ATPLC4,
phosphatidylinositol-speciwc
phospholipase C4		 -0.66 0.3 -0.3
90 AT5G06300 Putative lysine decarboxylase family protein LONELY GUY 7 -0.66 0.3 -0.31
91 AT4G15120 VQ motif-containing protein -0.65 0.31 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
92 C0133 Kaempferol-3,7-O-α-dirhamnopyranoside Kaempferol-3,7-O-α-L-dirhamnopyranoside Kaempferol-3-rhamnoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.9 0.47 -0.46 C0133
93 C0241 Stigmasterol 3-O-β-D-glucoside - Stigmasterol 3-O-β-D-glucoside - -0.79 0.46 -0.52 C0241