AT1G62390 : CLUMPED CHLOROPLASTS 1
Query Information
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AGICode AT1G62390
Description Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G62390 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein
/ tetratricopeptide repeat (TPR)-containing protein		 CLUMPED CHLOROPLASTS 1, Phox2 1 0.28 -0.34
2 AT5G08610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 PIGMENT DEFECTIVE 340 0.88 0.32 -0.31
3 AT1G06950 translocon at the inner envelope membrane of chloroplasts
110		 ARABIDOPSIS THALIANA TRANSLOCON AT
THE INNER ENVELOPE MEMBRANE OF
CHLOROPLASTS 110, translocon at
the inner envelope membrane of
chloroplasts 110		 0.88 0.3 -0.31
4 AT5G18570 GTP1/OBG family protein ATOBGC, OBG-like protein,
chloroplastic SAR1, EMBRYO
DEFECTIVE 269, EMBRYO DEFECTIVE
3138		 0.88 0.31 -0.3
5 AT1G79560 FTSH protease 12 EMBRYO DEFECTIVE 1047, EMBRYO
DEFECTIVE 156, EMBRYO DEFECTIVE
36, FTSH protease 12		 0.87 0.31 -0.3
6 AT5G46290 3-ketoacyl-acyl carrier protein synthase I KETOACYL-ACP SYNTHASE 1,
3-ketoacyl-acyl carrier protein
synthase I		 0.84 0.33 -0.32
7 AT3G21300 RNA methyltransferase family protein 0.84 0.31 -0.31
8 AT5G16715 ATP binding;valine-tRNA ligases;aminoacyl-tRNA
ligases;nucleotide binding;ATP binding;aminoacyl-tRNA
ligases		 embryo defective 2247 0.84 0.31 -0.3
9 AT1G59990 DEA(D/H)-box RNA helicase family protein EMBRYO DEFECTIVE 3108, RNA
helicase 22		 0.83 0.34 -0.3
10 AT1G09900 Pentatricopeptide repeat (PPR-like) superfamily protein 0.83 0.32 -0.34
11 AT4G02510 translocon at the outer envelope membrane of chloroplasts
159		 ATTOC159, PLASTID PROTEIN IMPORT
2, translocon at the outer
envelope membrane of chloroplasts
159, TRANSLOCON AT THE OUTER
ENVELOPE MEMBRANE OF CHLOROPLASTS
160, TRANSLOCON AT THE OUTER
ENVELOPE MEMBRANE OF CHLOROPLASTS
86		 0.82 0.33 -0.31
12 AT3G48500 Nucleic acid-binding, OB-fold-like protein PIGMENT DEFECTIVE 312, PLASTID
TRANSCRIPTIONALLY ACTIVE 10		 0.82 0.3 -0.32
13 AT5G57900 SKP1 interacting partner 1 SKP1 interacting partner 1 -0.82 0.3 -0.31
14 AT4G09730 RH39 RH39 0.82 0.31 -0.3
15 AT5G48830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.82 0.31 -0.3
16 AT4G11420 eukaryotic translation initiation factor 3A ATEIF3A-1, ATTIF3A1, eukaryotic
translation initiation factor 3A,
EIF3A-1, TIF3A1		 0.81 0.34 -0.31
17 AT3G54090 fructokinase-like 1 fructokinase-like 1 0.81 0.33 -0.3
18 AT5G39980 Tetratricopeptide repeat (TPR)-like superfamily protein 0.81 0.32 -0.29
19 AT5G12860 dicarboxylate transporter 1 dicarboxylate transporter 1 0.8 0.34 -0.33
20 AT5G60360 aleurain-like protease aleurain-like protease,
aleurain-like protease, SENESCENCE
ASSOCIATED GENE2		 -0.8 0.31 -0.31
21 AT5G19820 ARM repeat superfamily protein embryo defective 2734 0.8 0.3 -0.32
22 AT5G43960 Nuclear transport factor 2 (NTF2) family protein with RNA
binding (RRM-RBD-RNP motifs) domain		 0.8 0.31 -0.31
23 AT1G79080 Pentatricopeptide repeat (PPR) superfamily protein 0.8 0.31 -0.31
24 AT1G47960 cell wall / vacuolar inhibitor of fructosidase 1 CELL WALL / VACUOLAR INHIBITOR OF
FRUCTOSIDASE 1, cell wall /
vacuolar inhibitor of fructosidase
1		 -0.8 0.31 -0.34
25 AT1G71460 Pentatricopeptide repeat (PPR-like) superfamily protein 0.8 0.32 -0.31
26 AT5G55280 homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 ARABIDOPSIS THALIANA HOMOLOG OF
BACTERIAL CYTOKINESIS Z-RING
PROTEIN FTSZ 1-1, CHLOROPLAST
FTSZ, homolog of bacterial
cytokinesis Z-ring protein FTSZ
1-1		 0.8 0.31 -0.3
27 AT2G04030 Chaperone protein htpG family protein HEAT SHOCK PROTEIN 90.5, CR88,
EMBRYO DEFECTIVE 1956, HEAT SHOCK
PROTEIN 88.1, HEAT SHOCK PROTEIN
90.5		 0.79 0.32 -0.32
28 AT1G80410 tetratricopeptide repeat (TPR)-containing protein EMBRYO DEFECTIVE 2753, OMISHA 0.79 0.3 -0.31
29 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.79 0.3 -0.32
30 AT2G29760 Tetratricopeptide repeat (TPR)-like superfamily protein ORGANELLE TRANSCRIPT PROCESSING 81 0.79 0.3 -0.3
31 AT3G17970 translocon at the outer membrane of chloroplasts 64-III translocon at the outer membrane
of chloroplasts 64-III, translocon
at the outer membrane of
chloroplasts 64-III		 0.79 0.32 -0.32
32 AT1G48570 zinc finger (Ran-binding) family protein 0.78 0.32 -0.33
33 AT4G31210 DNA topoisomerase, type IA, core 0.78 0.34 -0.31
34 AT3G02060 DEAD/DEAH box helicase, putative 0.78 0.32 -0.29
35 AT3G16260 tRNAse Z4 tRNAse Z4 0.78 0.32 -0.32
36 AT1G49760 poly(A) binding protein 8 poly(A) binding protein 8, POLY(A)
BINDING PROTEIN 8		 0.78 0.32 -0.3
37 AT1G69950 transposable element gene 0.78 0.29 -0.33
38 AT3G03310 lecithin:cholesterol acyltransferase 3 ARABIDOPSIS LECITHIN:CHOLESTEROL
ACYLTRANSFERASE 3,
lecithin:cholesterol
acyltransferase 3		 -0.78 0.32 -0.33
39 AT1G79090 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Topoisomerase II-associated protein PAT1
(InterPro:IPR019167); BEST Arabidopsis thaliana protein
match is: Topoisomerase II-associated protein PAT1
(TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.77 0.3 -0.32
40 AT1G63680 acid-amino acid ligases;ligases;ATP binding;ATP
binding;ligases		 ALBINO OR PALE-GREEN 13, ATMURE,
MURE, PIGMENT DEFECTIVE EMBRYO 316		 0.77 0.33 -0.3
41 AT2G24120 DNA/RNA polymerases superfamily protein PIGMENT DEFECTIVE 319, SCABRA 3 0.77 0.32 -0.32
42 AT1G13640 Phosphatidylinositol 3- and 4-kinase family protein 0.77 0.32 -0.33
43 AT4G22820 A20/AN1-like zinc finger family protein -0.77 0.3 -0.31
44 AT3G56680 Single-stranded nucleic acid binding R3H protein 0.76 0.3 -0.3
45 AT5G52010 C2H2-like zinc finger protein 0.76 0.31 -0.32
46 AT2G33380 Caleosin-related family protein Arabidopsis thaliana caleosin 3,
caleosin 3, caleosin 3, RESPONSIVE
TO DESSICATION 20		 -0.76 0.32 -0.3
47 AT5G19920 Transducin/WD40 repeat-like superfamily protein 0.76 0.32 -0.33
48 AT1G60080 3'-5'-exoribonuclease family protein 0.76 0.34 -0.32
49 AT4G02680 ETO1-like 1 ETO1-like 1 0.76 0.32 -0.29
50 AT1G04520 plasmodesmata-located protein 2 plasmodesmata-located protein 2 0.76 0.3 -0.34
51 AT3G10690 DNA GYRASE A DNA GYRASE A 0.76 0.33 -0.31
52 AT2G25100 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.76 0.31 -0.33
53 AT2G25870 haloacid dehalogenase-like hydrolase family protein 0.76 0.32 -0.31
54 AT5G13650 elongation factor family protein SUPPRESSOR OF VARIEGATION 3 0.76 0.32 -0.31
55 AT5G63140 purple acid phosphatase 29 purple acid phosphatase 29, PAP29,
purple acid phosphatase 29		 0.76 0.31 -0.34
56 AT1G15510 Tetratricopeptide repeat (TPR)-like superfamily protein ARABIDOPSIS EARLY CHLOROPLAST
BIOGENESIS2, EARLY CHLOROPLAST
BIOGENESIS2, VANILLA CREAM 1		 0.75 0.32 -0.31
57 AT1G19450 Major facilitator superfamily protein 0.75 0.29 -0.33
58 AT5G18170 glutamate dehydrogenase 1 glutamate dehydrogenase 1 -0.75 0.32 -0.32
59 AT5G18820 TCP-1/cpn60 chaperonin family protein chaperonin-60alpha2, embryo
defective 3007		 0.75 0.31 -0.32
60 AT1G48000 myb domain protein 112 myb domain protein 112, myb domain
protein 112		 -0.75 0.3 -0.31
61 AT4G26270 phosphofructokinase 3 phosphofructokinase 3 -0.75 0.33 -0.32
62 AT1G72550 tRNA synthetase beta subunit family protein 0.75 0.31 -0.31
63 AT2G31660 ARM repeat superfamily protein enhanced miRNA activity 1, SUPER
SENSITIVE TO ABA AND DROUGHT2,
UNARMED 9		 0.75 0.31 -0.31
64 AT3G57430 Tetratricopeptide repeat (TPR)-like superfamily protein ORGANELLE TRANSCRIPT PROCESSING 84 0.75 0.31 -0.3
65 AT1G09660 RNA-binding KH domain-containing protein 0.74 0.32 -0.32
66 AT5G16620 hydroxyproline-rich glycoprotein family protein translocon at the inner envelope
membrane of chloroplasts 40,
pigment defective embryo 120,
translocon at the inner envelope
membrane of chloroplasts 40		 0.74 0.32 -0.32
67 AT3G15790 methyl-CPG-binding domain 11 ATMBD11, methyl-CPG-binding domain
11		 -0.74 0.3 -0.31
68 AT1G48650 DEA(D/H)-box RNA helicase family protein 0.74 0.32 -0.33
69 AT5G02180 Transmembrane amino acid transporter family protein 0.74 0.3 -0.32
70 AT1G18070 Translation elongation factor EF1A/initiation factor
IF2gamma family protein		 0.74 0.31 -0.34
71 AT3G17970 translocon at the outer membrane of chloroplasts 64-III translocon at the outer membrane
of chloroplasts 64-III, translocon
at the outer membrane of
chloroplasts 64-III		 0.74 0.33 -0.32
72 AT5G60710 Zinc finger (C3HC4-type RING finger) family protein 0.74 0.29 -0.31
73 AT4G39530 Tetratricopeptide repeat (TPR)-like superfamily protein 0.74 0.33 -0.32
74 AT2G28050 Pentatricopeptide repeat (PPR) superfamily protein 0.74 0.33 -0.33
75 AT2G30360 SOS3-interacting protein 4 CBL-INTERACTING PROTEIN KINASE 11,
PROTEIN KINASE SOS2-LIKE 5,
SOS3-interacting protein 4,
SNF1-RELATED PROTEIN KINASE 3.22		 -0.73 0.32 -0.31
76 AT1G08460 histone deacetylase 8 ATHDA8, histone deacetylase 8,
HISTONE DEACETYLASE 8		 -0.73 0.29 -0.31
77 AT1G06800 alpha/beta-Hydrolases superfamily protein phospholipase A I gamma 1 -0.73 0.3 -0.32
78 AT5G58740 HSP20-like chaperones superfamily protein -0.73 0.31 -0.33
79 AT1G47128 Granulin repeat cysteine protease family protein responsive to dehydration 21,
RESPONSIVE TO DEHYDRATION 21A		 -0.72 0.33 -0.34
80 AT1G55920 serine acetyltransferase 2;1 serine acetyltransferase 2;1,
SERINE ACETYLTRANSFERASE 1, SERINE
ACETYLTRANSFERASE 5, serine
acetyltransferase 2;1		 -0.72 0.31 -0.31
81 AT1G17745 D-3-phosphoglycerate dehydrogenase 3-phosphoglycerate dehydrogenase -0.71 0.34 -0.28
82 AT3G23600 alpha/beta-Hydrolases superfamily protein -0.71 0.32 -0.31
83 AT5G54300 Protein of unknown function (DUF761) -0.71 0.31 -0.33
84 AT5G23640 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.7 0.32 -0.34
85 AT5G45350 proline-rich family protein -0.7 0.31 -0.32
86 AT3G23570 alpha/beta-Hydrolases superfamily protein -0.7 0.33 -0.32
87 AT1G52410 TSK-associating protein 1 TSK-associating protein 1 -0.7 0.31 -0.31
88 AT2G30550 alpha/beta-Hydrolases superfamily protein -0.7 0.33 -0.31
89 AT3G28950 AIG2-like (avirulence induced gene) family protein -0.7 0.32 -0.31
90 AT2G43530 Scorpion toxin-like knottin superfamily protein -0.69 0.32 -0.3
91 AT5G66730 C2H2-like zinc finger protein ENHYDROUS, INDETERMINATE DOMAIN 1 -0.69 0.29 -0.31
92 AT4G01070 UDP-Glycosyltransferase superfamily protein GT72B1, UDP-GLUCOSE-DEPENDENT
GLUCOSYLTRANSFERASE 72 B1		 -0.69 0.32 -0.31
93 AT1G11840 glyoxalase I homolog glyoxalase I homolog, glyoxalase I
homolog		 -0.69 0.32 -0.32
94 AT5G04750 F1F0-ATPase inhibitor protein, putative -0.69 0.32 -0.31
95 AT2G22970 serine carboxypeptidase-like 11 serine carboxypeptidase-like 11 -0.68 0.32 -0.33
96 AT1G19230 Riboflavin synthase-like superfamily protein -0.68 0.31 -0.31
97 AT3G22200 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 GAMMA-AMINOBUTYRATE TRANSAMINASE,
HEXENAL RESPONSE1, POLLEN-PISTIL
INCOMPATIBILITY 2		 -0.68 0.31 -0.33
98 AT4G38460 geranylgeranyl reductase geranylgeranyl reductase -0.67 0.33 -0.3
99 AT5G23460 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.67 0.3 -0.31
100 AT3G16990 Haem oxygenase-like, multi-helical -0.67 0.31 -0.3
101 AT3G16470 Mannose-binding lectin superfamily protein jacalin-related lectin 35,
JASMONATE RESPONSIVE 1		 -0.67 0.33 -0.3
102 AT1G73500 MAP kinase kinase 9 ATMKK9, MAP kinase kinase 9 -0.67 0.31 -0.31
103 AT5G41800 Transmembrane amino acid transporter family protein -0.67 0.33 -0.32
104 AT3G46230 heat shock protein 17.4 ARABIDOPSIS THALIANA HEAT SHOCK
PROTEIN 17.4, heat shock protein
17.4		 -0.66 0.33 -0.31
105 AT1G52880 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 18, ATNAM, NO APICAL
MERISTEM, NAC-REGULATED SEED
MORPHOLOGY 2		 -0.66 0.31 -0.32
106 AT4G35110 Arabidopsis phospholipase-like protein (PEARLI 4) family -0.66 0.3 -0.31