AT1G53200 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT1G53200
Description unknown protein; Has 21 Blast hits to 21 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G53200 unknown protein; Has 21 Blast hits to 21 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 1 0.31 -0.29
2 AT1G19520 pentatricopeptide (PPR) repeat-containing protein NUCLEAR FUSION DEFECTIVE 5 0.88 0.31 -0.32
3 AT5G16750 Transducin family protein / WD-40 repeat family protein TORMOZEMBRYO DEFECTIVE 0.83 0.31 -0.31
4 AT2G40360 Transducin/WD40 repeat-like superfamily protein 0.83 0.3 -0.32
5 AT5G43850 RmlC-like cupins superfamily protein ARD4, ATARD4 -0.82 0.34 -0.33
6 AT2G41870 Remorin family protein -0.81 0.33 -0.3
7 AT1G29940 nuclear RNA polymerase A2 nuclear RNA polymerase A2 0.81 0.31 -0.32
8 AT3G52140 tetratricopeptide repeat (TPR)-containing protein 0.8 0.29 -0.3
9 AT1G49540 elongator protein 2 Elongator subunit 2, elongator
protein 2		 0.79 0.3 -0.31
10 AT5G67240 small RNA degrading nuclease 3 small RNA degrading nuclease 3 0.79 0.32 -0.31
11 AT1G06720 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.79 0.29 -0.32
12 AT3G11450 DnaJ domain ;Myb-like DNA-binding domain 0.79 0.31 -0.32
13 AT3G57660 nuclear RNA polymerase A1 nuclear RNA polymerase A1 0.78 0.32 -0.34
14 AT4G16060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 42
Blast hits to 42 proteins in 16 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 7 (source: NCBI BLink).		 -0.78 0.32 -0.31
15 AT3G07660 Kinase-related protein of unknown function (DUF1296) 0.78 0.34 -0.3
16 AT5G20600 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA
processing; LOCATED IN: preribosome, small subunit
precursor; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits
to 530 proteins in 201 species: Archae - 0; Bacteria - 10;
Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other
Eukaryotes - 112 (source: NCBI BLink).		 0.78 0.33 -0.31
17 AT3G11830 TCP-1/cpn60 chaperonin family protein 0.78 0.31 -0.3
18 AT1G06900 Insulinase (Peptidase family M16) family protein 0.77 0.33 -0.32
19 AT5G06110 DnaJ domain ;Myb-like DNA-binding domain 0.77 0.31 -0.3
20 AT1G60850 DNA-directed RNA polymerase family protein AAC42, ATRPAC42 0.76 0.3 -0.32
21 AT5G12840 nuclear factor Y, subunit A1 ATHAP2A, EMBRYO DEFECTIVE 2220,
HAP2A, nuclear factor Y, subunit
A1		 -0.76 0.3 -0.3
22 AT1G04350 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.76 0.31 -0.31
23 AT4G37000 accelerated cell death 2 (ACD2) ACCELERATED CELL DEATH 2,
ARABIDOPSIS THALIANA RED
CHLOROPHYLL CATABOLITE REDUCTASE		 -0.76 0.33 -0.33
24 AT5G17520 root cap 1 (RCP1) MALTOSE EXCESS 1, ROOT CAP 1 -0.76 0.31 -0.32
25 AT3G06530 ARM repeat superfamily protein 0.76 0.32 -0.31
26 AT1G53645 hydroxyproline-rich glycoprotein family protein 0.76 0.31 -0.31
27 AT1G52160 tRNAse Z3 tRNAse Z3 0.76 0.31 -0.33
28 AT5G60730 Anion-transporting ATPase 0.75 0.33 -0.32
29 AT1G59760 RNA helicase, ATP-dependent, SK12/DOB1 protein AtMTR4, homolog of yeast MTR4 0.75 0.31 -0.32
30 AT3G24080 KRR1 family protein 0.75 0.32 -0.33
31 AT1G66890 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
50S ribosomal protein-related (TAIR:AT5G16200.1); Has 36
Blast hits to 36 proteins in 7 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.74 0.31 -0.31
32 AT4G29890 choline monooxygenase, putative (CMO-like) -0.74 0.31 -0.32
33 AT2G28450 zinc finger (CCCH-type) family protein 0.74 0.33 -0.31
34 AT5G60960 Pentatricopeptide repeat (PPR) superfamily protein PPR protein localized to the
nucleus and mitochondria 1		 0.74 0.31 -0.32
35 AT3G02650 Tetratricopeptide repeat (TPR)-like superfamily protein 0.74 0.32 -0.33
36 AT5G56500 TCP-1/cpn60 chaperonin family protein chaperonin-60beta3 0.73 0.28 -0.32
37 AT5G14450 GDSL-like Lipase/Acylhydrolase superfamily protein -0.73 0.32 -0.31
38 AT1G48420 D-cysteine desulfhydrase 1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, A. THALIANA
1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, D-cysteine
desulfhydrase, D-cysteine
desulfhydrase		 -0.73 0.32 -0.31
39 AT3G02490 Pentatricopeptide repeat (PPR) superfamily protein 0.73 0.33 -0.32
40 AT1G68660 Ribosomal protein L12/ ATP-dependent Clp protease adaptor
protein ClpS family protein		 -0.73 0.31 -0.33
41 AT1G30500 nuclear factor Y, subunit A7 nuclear factor Y, subunit A7 -0.73 0.33 -0.32
42 AT1G14610 valyl-tRNA synthetase / valine--tRNA ligase (VALRS) TWIN 2, VALYL TRNA SYNTHETASE 0.73 0.3 -0.3
43 AT5G57120 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: nucleolus;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: LisH
dimerisation motif (InterPro:IPR006594), SRP40, C-terminal
(InterPro:IPR007718); Has 101969 Blast hits to 55488
proteins in 2506 species: Archae - 424; Bacteria - 13843;
Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses -
569; Other Eukaryotes - 34792 (source: NCBI BLink).		 0.73 0.32 -0.31
44 AT5G37680 ADP-ribosylation factor-like A1A ADP-ribosylation factor-like A1A,
ADP-ribosylation factor-like A1A		 -0.72 0.3 -0.31
45 AT5G57980 RNA polymerase II fifth largest subunit, C RNA polymerase II fifth largest
subunit, C		 0.72 0.32 -0.3
46 AT4G27390 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.72 0.3 -0.33
47 AT3G26782 Tetratricopeptide repeat (TPR)-like superfamily protein 0.71 0.31 -0.35
48 AT3G24440 Fibronectin type III domain-containing protein VIN3-LIKE 1, VERNALIZATION 5 0.71 0.33 -0.31
49 AT5G56950 nucleosome assembly protein 1;3 nucleosome assembly protein 1;3,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 03,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A3		 0.71 0.33 -0.31
50 AT5G42540 exoribonuclease 2 EXORIBONUCLEASE 2, exoribonuclease
2		 0.71 0.3 -0.33
51 AT3G09250 Nuclear transport factor 2 (NTF2) family protein -0.71 0.33 -0.32
52 AT1G14300 ARM repeat superfamily protein 0.7 0.31 -0.32
53 AT3G07310 Protein of unknown function (DUF760) -0.7 0.32 -0.31
54 AT5G02790 Glutathione S-transferase family protein Glutathione transferase L3 -0.7 0.31 -0.32
55 AT3G44330 INVOLVED IN: protein processing; LOCATED IN: mitochondrion,
endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED
IN: 25 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Nicalin
(InterPro:IPR016574), EF-Hand 1, calcium-binding site
(InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has
245 Blast hits to 243 proteins in 99 species: Archae - 6;
Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.7 0.34 -0.31
56 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.7 0.33 -0.3
57 AT3G25655 inflorescence deficient in abscission (IDA)-like 1 inflorescence deficient in
abscission (IDA)-like 1		 0.69 0.31 -0.32
58 AT4G12240 zinc finger (C2H2 type) family protein 0.69 0.33 -0.32
59 AT3G15840 post-illumination chlorophyll fluorescence increase post-illumination chlorophyll
fluorescence increase		 -0.69 0.29 -0.32
60 AT5G18100 copper/zinc superoxide dismutase 3 copper/zinc superoxide dismutase 3 -0.69 0.34 -0.3
61 AT3G19000 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.69 0.31 -0.34
62 AT1G51830 Leucine-rich repeat protein kinase family protein 0.69 0.3 -0.33
63 AT5G02240 NAD(P)-binding Rossmann-fold superfamily protein -0.69 0.32 -0.32
64 AT4G32320 ascorbate peroxidase 6 ascorbate peroxidase 6 -0.69 0.32 -0.3
65 AT3G06330 RING/U-box superfamily protein -0.69 0.3 -0.29
66 AT1G77930 Chaperone DnaJ-domain superfamily protein -0.69 0.32 -0.31
67 AT2G03550 alpha/beta-Hydrolases superfamily protein -0.69 0.3 -0.32
68 AT5G66670 Protein of unknown function (DUF677) -0.69 0.33 -0.31
69 AT4G04850 K+ efflux antiporter 3 ATKEA3, K+ efflux antiporter 3 -0.69 0.33 -0.34
70 AT5G35910 Polynucleotidyl transferase, ribonuclease H fold protein
with HRDC domain		 0.69 0.31 -0.32
71 AT2G39230 LATERAL ORGAN JUNCTION LATERAL ORGAN JUNCTION 0.69 0.31 -0.32
72 AT1G34640 peptidases -0.69 0.3 -0.31
73 AT4G34480 O-Glycosyl hydrolases family 17 protein -0.68 0.32 -0.31
74 AT1G61040 plus-3 domain-containing protein vernalization independence 5 0.68 0.27 -0.32
75 AT4G27640 ARM repeat superfamily protein 0.68 0.33 -0.32
76 AT3G05990 Leucine-rich repeat (LRR) family protein 0.68 0.31 -0.3
77 AT4G09600 GAST1 protein homolog 3 GAST1 protein homolog 3 -0.68 0.33 -0.33
78 AT4G00355 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits
to 97 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 ATG8-interacting protein 2 -0.68 0.33 -0.32
79 AT1G14390 Leucine-rich repeat protein kinase family protein 0.68 0.31 -0.32
80 AT4G27710 cytochrome P450, family 709, subfamily B, polypeptide 3 cytochrome P450, family 709,
subfamily B, polypeptide 3		 -0.68 0.32 -0.29
81 AT5G10280 myb domain protein 92 ATMYB64, myb domain protein 92,
myb domain protein 92		 0.68 0.3 -0.3
82 AT3G28760 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate
synthase, prokaryotic-type (InterPro:IPR002812); Has 390
Blast hits to 390 proteins in 131 species: Archae - 144;
Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 54;
Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).		 -0.68 0.33 -0.31
83 AT2G27290 Protein of unknown function (DUF1279) -0.68 0.31 -0.31
84 AT3G23690 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.68 0.31 -0.32
85 AT3G62360 Carbohydrate-binding-like fold 0.67 0.3 -0.34
86 AT5G11350 DNAse I-like superfamily protein -0.67 0.3 -0.34
87 AT5G65390 arabinogalactan protein 7 arabinogalactan protein 7 0.67 0.32 -0.31
88 AT2G34700 Pollen Ole e 1 allergen and extensin family protein 0.67 0.32 -0.34
89 AT1G26660 Prefoldin chaperone subunit family protein 0.67 0.31 -0.32
90 AT4G18975 Pentatricopeptide repeat (PPR) superfamily protein -0.67 0.33 -0.34
91 AT5G54370 Late embryogenesis abundant (LEA) protein-related 0.67 0.31 -0.31
92 AT5G07250 RHOMBOID-like protein 3 RHOMBOID-like protein 3,
RHOMBOID-like protein 3		 -0.67 0.33 -0.3
93 AT4G27800 thylakoid-associated phosphatase 38 PROTEIN PHOSPHATASE 1,
thylakoid-associated phosphatase
38		 -0.67 0.31 -0.33
94 AT5G47640 nuclear factor Y, subunit B2 nuclear factor Y, subunit B2 -0.67 0.31 -0.32
95 AT2G28190 copper/zinc superoxide dismutase 2 copper/zinc superoxide dismutase
2, COPPER/ZINC SUPEROXIDE
DISMUTASE 2		 0.67 0.31 -0.3
96 AT1G71050 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 20		 -0.67 0.31 -0.31
97 AT5G58330 lactate/malate dehydrogenase family protein -0.67 0.32 -0.32
98 AT2G16570 GLN phosphoribosyl pyrophosphate amidotransferase 1 GLN phosphoribosyl pyrophosphate
amidotransferase 1, ATASE, GLN
phosphoribosyl pyrophosphate
amidotransferase 1		 0.67 0.3 -0.32
99 AT1G19000 Homeodomain-like superfamily protein -0.66 0.29 -0.33
100 AT2G21185 unknown protein; Has 9 Blast hits to 9 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.66 0.32 -0.31
101 AT3G19900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3067 (InterPro:IPR021420);
Has 276 Blast hits to 276 proteins in 83 species: Archae -
0; Bacteria - 112; Metazoa - 0; Fungi - 2; Plants - 59;
Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).		 -0.66 0.32 -0.32
102 AT3G60810 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1499 (InterPro:IPR010865); Has 444
Blast hits to 444 proteins in 143 species: Archae - 0;
Bacteria - 268; Metazoa - 0; Fungi - 0; Plants - 51;
Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).		 -0.66 0.32 -0.31
103 AT1G69935 short hypocotyl in white light1 SHORT HYPOCOTYL IN WHITE LIGHT1 -0.66 0.33 -0.31
104 AT4G20820 FAD-binding Berberine family protein -0.66 0.32 -0.33
105 AT3G59940 Galactose oxidase/kelch repeat superfamily protein -0.65 0.3 -0.33
106 AT1G63120 RHOMBOID-like 2 RHOMBOID-like 2, RHOMBOID-like 2 -0.65 0.3 -0.3
107 AT4G01940 NFU domain protein 1 AtCNFU1, NFU domain protein 1 -0.65 0.31 -0.3
108 AT2G45740 peroxin 11D peroxin 11D -0.65 0.32 -0.31
109 AT4G13200 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast,
plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 97 Blast hits to 97 proteins
in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2;
Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2
(source: NCBI BLink).		 -0.65 0.35 -0.33
110 AT5G52420 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G23920.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.65 0.31 -0.33
111 AT1G70580 alanine-2-oxoglutarate aminotransferase 2 alanine-2-oxoglutarate
aminotransferase 2,
GLUTAMATE:GLYOXYLATE
AMINOTRANSFERASE 2		 -0.65 0.33 -0.3
112 AT4G37200 Thioredoxin superfamily protein HIGH CHLOROPHYLL FLUORESCENCE 164 -0.65 0.32 -0.31
113 AT4G29220 phosphofructokinase 1 phosphofructokinase 1 -0.65 0.32 -0.3
114 AT4G29070 Phospholipase A2 family protein -0.64 0.3 -0.31
115 AT1G68830 STT7 homolog STN7 STT7 homolog STN7 -0.64 0.32 -0.32
116 AT1G73170 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.64 0.31 -0.31
117 AT5G13880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G47920.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.64 0.32 -0.32
118 AT3G54390 sequence-specific DNA binding transcription factors -0.64 0.31 -0.32
119 AT1G02205 Fatty acid hydroxylase superfamily ECERIFERUM 1 -0.64 0.33 -0.31
120 AT3G47490 HNH endonuclease -0.64 0.31 -0.31
121 AT2G03530 ureide permease 2 ARABIDOPSIS THALIANA UREIDE
PERMEASE 2, ureide permease 2		 -0.64 0.32 -0.33
122 AT1G10650 SBP (S-ribonuclease binding protein) family protein -0.63 0.32 -0.32
123 AT2G36360 Galactose oxidase/kelch repeat superfamily protein -0.63 0.31 -0.31
124 AT4G10000 Thioredoxin family protein -0.63 0.34 -0.32
125 AT2G24920 transposable element gene -0.63 0.32 -0.3
126 AT2G38820 Protein of unknown function (DUF506) -0.63 0.33 -0.31
127 AT4G33580 beta carbonic anhydrase 5 A. THALIANA BETA CARBONIC
ANHYDRASE 5, beta carbonic
anhydrase 5		 -0.63 0.35 -0.32
128 AT2G07510 transposable element gene -0.63 0.3 -0.32
129 AT5G03430 phosphoadenosine phosphosulfate (PAPS) reductase family
protein		 -0.63 0.34 -0.31
130 AT1G65090 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G36100.1); Has 1435 Blast hits
to 1033 proteins in 192 species: Archae - 0; Bacteria - 61;
Metazoa - 511; Fungi - 123; Plants - 100; Viruses - 42;
Other Eukaryotes - 598 (source: NCBI BLink).		 -0.63 0.3 -0.31
131 AT2G23780 RING/U-box superfamily protein -0.63 0.29 -0.3
132 AT3G53470 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 35 Blast hits to 35 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.32 -0.28
133 AT1G12680 phosphoenolpyruvate carboxylase-related kinase 2 phosphoenolpyruvate
carboxylase-related kinase 2		 -0.63 0.31 -0.32