AT1G78260 : -
Query Information
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AGICode AT1G78260
Description RNA-binding (RRM/RBD/RNP motifs) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G78260 RNA-binding (RRM/RBD/RNP motifs) family protein 1 0.31 -0.34
2 AT2G23560 methyl esterase 7 ARABIDOPSIS THALIANA METHYL
ESTERASE 7, methyl esterase 7		 0.79 0.31 -0.32
3 AT3G26700 Protein kinase superfamily protein 0.78 0.3 -0.3
4 AT5G13610 Protein of unknown function (DUF155) 0.78 0.31 -0.32
5 AT4G34720 ATPase, F0/V0 complex, subunit C protein ATVHA-C1, AVA-P1, VACUOLAR
H+-PUMPING ATPASE C1		 0.75 0.33 -0.31
6 AT2G18770 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.75 0.32 -0.31
7 AT2G38360 prenylated RAB acceptor 1.B4 prenylated RAB acceptor 1.B4 0.74 0.33 -0.31
8 AT5G40420 oleosin 2 OLEOSIN 2, oleosin 2 -0.74 0.32 -0.3
9 AT3G51260 20S proteasome alpha subunit PAD1 20S proteasome alpha subunit PAD1 0.74 0.33 -0.31
10 AT4G36750 Quinone reductase family protein 0.73 0.33 -0.32
11 AT5G61240 Leucine-rich repeat (LRR) family protein 0.73 0.29 -0.31
12 AT2G25310 Protein of unknown function (DUF2012) 0.73 0.31 -0.33
13 AT1G33240 GT-2-like 1 GT2-LIKE 1, GT-2-like 1 0.73 0.31 -0.33
14 AT5G50210 quinolinate synthase ONSET OF LEAF DEATH 5, quinolinate
synthase, SULFUR E 3		 0.73 0.31 -0.3
15 AT5G03070 importin alpha isoform 9 importin alpha isoform 9 -0.73 0.29 -0.35
16 AT1G55330 arabinogalactan protein 21 arabinogalactan protein 21,
ARABINOGALACTAN PROTEIN 21		 0.72 0.31 -0.32
17 AT3G62090 phytochrome interacting factor 3-like 2 PHYTOCHROME-INTERACTING FACTOR 6,
phytochrome interacting factor
3-like 2		 -0.72 0.33 -0.33
18 AT1G71350 eukaryotic translation initiation factor SUI1 family
protein		 -0.72 0.32 -0.33
19 AT3G20570 early nodulin-like protein 9 AtENODL9, early nodulin-like
protein 9		 0.71 0.34 -0.33
20 AT4G10770 oligopeptide transporter 7 ARABIDOPSIS THALIANA OLIGOPEPTIDE
TRANSPORTER 7, oligopeptide
transporter 7		 0.71 0.3 -0.32
21 AT5G23570 XS domain-containing protein / XS zinc finger
domain-containing protein-related		 SUPPRESSOR OF GENE SILENCING 3,
SUPPRESSOR OF GENE SILENCING 3		 -0.71 0.32 -0.32
22 AT1G05500 Calcium-dependent lipid-binding (CaLB domain) family
protein		 ARABIDOPSIS THALIANA SYNAPTOTAGMIN
HOMOLOG E, NTMC2T2.1,
NTMC2TYPE2.1, synaptotagmin 5,
SYNAPTOTAGMIN HOMOLOG E		 0.71 0.28 -0.29
23 AT3G02900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast
hits to 80 proteins in 21 species: Archae - 0; Bacteria -
4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.7 0.31 -0.32
24 AT5G44860 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G19950.1); Has 233 Blast hits
to 227 proteins in 25 species: Archae - 0; Bacteria - 13;
Metazoa - 1; Fungi - 0; Plants - 216; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 0.7 0.29 -0.31
25 AT4G00330 calmodulin-binding receptor-like cytoplasmic kinase 2 calmodulin-binding receptor-like
cytoplasmic kinase 2		 0.7 0.32 -0.3
26 AT2G05755 Nodulin MtN21 /EamA-like transporter family protein 0.7 0.32 -0.3
27 AT1G24170 Nucleotide-diphospho-sugar transferases superfamily protein GALACTURONOSYLTRANSFERASE-LIKE 8,
LGT9		 0.7 0.32 -0.33
28 AT5G03380 Heavy metal transport/detoxification superfamily protein 0.69 0.31 -0.32
29 AT3G55950 CRINKLY4 related 3 ATCRR3, CRINKLY4 related 3 0.69 0.31 -0.3
30 AT4G33905 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein -0.69 0.3 -0.31
31 AT1G63170 Zinc finger, C3HC4 type (RING finger) family protein 0.69 0.31 -0.34
32 AT4G13340 Leucine-rich repeat (LRR) family protein leucine-rich repeat/extensin 3 0.69 0.3 -0.33
33 AT2G27360 GDSL-like Lipase/Acylhydrolase superfamily protein 0.68 0.35 -0.31
34 AT3G17520 Late embryogenesis abundant protein (LEA) family protein -0.68 0.34 -0.31
35 AT5G56600 profilin 3 PROFILIN 3, profilin 3 0.68 0.3 -0.31
36 AT4G14680 Pseudouridine synthase/archaeosine transglycosylase-like
family protein		 APS3 0.68 0.32 -0.3
37 AT4G25550 Cleavage/polyadenylation specificity factor, 25kDa subunit 0.68 0.31 -0.31
38 AT1G10210 mitogen-activated protein kinase 1 mitogen-activated protein kinase
1, mitogen-activated protein
kinase 1		 -0.68 0.33 -0.3
39 AT1G21920 Histone H3 K4-specific methyltransferase SET7/9 family
protein		 -0.68 0.32 -0.34
40 AT5G20060 alpha/beta-Hydrolases superfamily protein 0.68 0.3 -0.32
41 AT4G30060 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.68 0.3 -0.32
42 AT3G15720 Pectin lyase-like superfamily protein -0.67 0.33 -0.33
43 AT5G36290 Uncharacterized protein family (UPF0016) 0.67 0.31 -0.31
44 AT1G31710 Copper amine oxidase family protein 0.67 0.3 -0.32
45 AT2G40060 Clathrin light chain protein clathrin light chain 2 0.67 0.31 -0.33
46 AT2G36270 Basic-leucine zipper (bZIP) transcription factor family
protein		 ABA INSENSITIVE 5,
GROWTH-INSENSITIVITY TO ABA 1		 -0.67 0.33 -0.32
47 AT4G34215 Domain of unknown function (DUF303) 0.67 0.33 -0.31
48 AT2G31980 PHYTOCYSTATIN 2 PHYTOCYSTATIN 2, PHYTOCYSTATIN 2 -0.67 0.3 -0.33
49 AT5G22280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G44280.1); Has 82 Blast hits to 82 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.67 0.34 -0.32
50 AT5G20650 copper transporter 5 copper transporter 5 0.67 0.31 -0.31
51 AT1G60160 Potassium transporter family protein -0.67 0.3 -0.33
52 AT3G02880 Leucine-rich repeat protein kinase family protein 0.67 0.33 -0.32
53 AT3G02290 RING/U-box superfamily protein 0.66 0.32 -0.35
54 AT1G51170 Protein kinase superfamily protein -0.66 0.31 -0.34
55 AT5G47770 farnesyl diphosphate synthase 1 farnesyl diphosphate synthase 1 0.66 0.32 -0.31
56 AT3G57070 Glutaredoxin family protein 0.65 0.32 -0.29
57 AT2G41420 proline-rich family protein WINDHOSE 2 0.65 0.32 -0.3
58 AT4G36030 armadillo repeat only 3 armadillo repeat only 3 0.65 0.3 -0.32
59 AT3G03170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G24890.1); Has 184 Blast hits
to 184 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.32 -0.32
60 AT5G59430 telomeric repeat binding protein 1 TELOMERE REPEAT BINDING PROTEIN 1,
telomeric repeat binding protein 1		 -0.65 0.32 -0.31
61 AT5G02040 prenylated RAB acceptor 1.A1 prenylated RAB acceptor 1.A1 0.65 0.3 -0.31
62 AT5G40190 RNA ligase/cyclic nucleotide phosphodiesterase family
protein		 0.65 0.31 -0.3
63 AT4G39770 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 trehalose-6-phosphate phosphatase
H		 0.65 0.32 -0.33
64 AT3G11700 FASCICLIN-like arabinogalactan protein 18 precursor FASCICLIN-like arabinogalactan
protein 18 precursor		 0.65 0.33 -0.32
65 AT3G03860 APR-like 5 APR-like 5, APR-like 5 0.64 0.3 -0.32
66 AT4G28770 Tetraspanin family protein 0.64 0.32 -0.31
67 AT2G46200 unknown protein; Has 2968 Blast hits to 2381 proteins in
310 species: Archae - 16; Bacteria - 188; Metazoa - 1070;
Fungi - 227; Plants - 145; Viruses - 4; Other Eukaryotes -
1318 (source: NCBI BLink).		 -0.64 0.29 -0.34
68 AT2G02800 protein kinase 2B protein kinase 2B, kinase 2 0.64 0.32 -0.32
69 AT1G75960 AMP-dependent synthetase and ligase family protein 0.64 0.33 -0.32
70 AT2G13500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G41590.1); Has 126 Blast hits
to 126 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.3 -0.28
71 AT1G55740 seed imbibition 1 seed imbibition 1, raffinose
synthase 1, seed imbibition 1		 -0.64 0.32 -0.33
72 AT3G30800 transposable element gene -0.63 0.3 -0.32
73 AT4G29960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.63 0.31 -0.3
74 AT5G13710 sterol methyltransferase 1 CEPHALOPOD, sterol
methyltransferase 1		 0.63 0.32 -0.31
75 AT1G14290 sphingoid base hydroxylase 2 sphingoid base hydroxylase 2 0.63 0.32 -0.3
76 AT5G40270 HD domain-containing metal-dependent phosphohydrolase
family protein		 0.63 0.35 -0.34
77 AT3G06340 DNAJ heat shock N-terminal domain-containing protein -0.63 0.3 -0.31
78 AT1G13580 LAG1 longevity assurance homolog 3 LAG1 longevity assurance homolog
3, LAG One Homologue 3		 0.63 0.3 -0.31
79 AT2G30460 Nucleotide/sugar transporter family protein 0.63 0.31 -0.3
80 AT1G12530 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G56420.1); Has 54 Blast hits
to 53 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.62 0.29 -0.32
81 AT5G45540 Protein of unknown function (DUF594) 0.62 0.3 -0.33
82 AT4G37890 Zinc finger (C3HC4-type RING finger) family protein embryo sac development arrest 40 -0.62 0.32 -0.3
83 AT2G38530 lipid transfer protein 2 cell growth defect factor-3, LP2,
lipid transfer protein 2		 -0.61 0.3 -0.3
84 AT3G14280 unknown protein; Has 51 Blast hits to 51 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.31 -0.32
85 AT4G14840 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G22520.1); Has 1681 Blast hits
to 1532 proteins in 283 species: Archae - 19; Bacteria -
179; Metazoa - 579; Fungi - 131; Plants - 223; Viruses - 5;
Other Eukaryotes - 545 (source: NCBI BLink).		 -0.61 0.31 -0.34
86 AT2G26470 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF159 (InterPro:IPR003738); Has 3646
Blast hits to 3636 proteins in 1001 species: Archae - 41;
Bacteria - 1922; Metazoa - 142; Fungi - 125; Plants - 44;
Viruses - 14; Other Eukaryotes - 1358 (source: NCBI BLink).		 -0.61 0.3 -0.31
87 AT4G23870 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G11020.1); Has 12 Blast hits
to 12 proteins in 4 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.32 -0.32
88 AT2G40900 nodulin MtN21 /EamA-like transporter family protein -0.59 0.31 -0.31
89 AT2G25000 WRKY DNA-binding protein 60 ATWRKY60, WRKY DNA-binding protein
60		 -0.59 0.31 -0.31
90 AT5G14940 Major facilitator superfamily protein -0.59 0.32 -0.32
91 AT4G03340 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.59 0.32 -0.31
92 AT4G28040 nodulin MtN21 /EamA-like transporter family protein -0.59 0.31 -0.32
93 AT4G17080 Histone H3 K4-specific methyltransferase SET7/9 family
protein		 -0.58 0.31 -0.34
94 AT4G35720 Arabidopsis protein of unknown function (DUF241) -0.58 0.31 -0.3
95 AT1G11950 Transcription factor jumonji (jmjC) domain-containing
protein		 -0.58 0.32 -0.29
96 AT1G79360 organic cation/carnitine transporter 2 organic cation/carnitine
transporter 2, ORGANIC CATION
TRANSPORTER 2, organic
cation/carnitine transporter 2		 -0.58 0.33 -0.28
97 AT4G34330 Protein of unknown function (DUF677) -0.57 0.33 -0.3
98 AT1G62290 Saposin-like aspartyl protease family protein -0.57 0.31 -0.31
99 AT1G09280 CONTAINS InterPro DOMAIN/s: Rhodanese-like
(InterPro:IPR001763), Serine hydrolase
(InterPro:IPR005645); BEST Arabidopsis thaliana protein
match is: Rhodanese/Cell cycle control phosphatase
superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits
to 5912 proteins in 1592 species: Archae - 0; Bacteria -
2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses -
0; Other Eukaryotes - 2186 (source: NCBI BLink).		 -0.57 0.28 -0.33
100 AT2G41900 CCCH-type zinc finger protein with ARM repeat domain OXIDATIVE STRESS 2 -0.57 0.31 -0.29
101 AT5G27000 kinesin 4 kinesin 4, KINESIN-LIKE PROTEIN IN
ARABIDOPSIS THALIANA D		 -0.57 0.3 -0.31
102 AT2G14930 transposable element gene -0.57 0.33 -0.3
103 AT3G55030 phosphatidylglycerolphosphate synthase 2 phosphatidylglycerolphosphate
synthase 2		 -0.57 0.33 -0.35
104 AT1G48310 chromatin remodeling factor18 CHA18, chromatin remodeling
factor18		 -0.56 0.29 -0.32
105 AT1G69720 heme oxygenase 3 heme oxygenase 3 -0.56 0.3 -0.33
106 AT3G53040 late embryogenesis abundant protein, putative / LEA
protein, putative		 -0.56 0.32 -0.33
107 AT3G14560 unknown protein; Has 6 Blast hits to 6 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.56 0.33 -0.32
108 AT4G21710 DNA-directed RNA polymerase family protein EMBRYO DEFECTIVE 1989, NRPB2, RPB2 -0.56 0.31 -0.31
109 AT1G68270 AMP-dependent synthetase and ligase family protein -0.55 0.31 -0.31
110 AT2G25930 hydroxyproline-rich glycoprotein family protein EARLY FLOWERING 3, PYK20 -0.55 0.32 -0.31
111 AT1G24450 Ribonuclease III family protein NUCLEAR FUSION DEFECTIVE 2 -0.55 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
112 C0263 UMP - UMP pyrimidine salvage pathway,
dolichyl-diphosphooligosaccharide biosynthesis,
lipid IVA biosynthesis,
uridine-5'-phosphate biosynthesis,
pyrimidine ribonucleotides interconversion 		-0.84 0.43 -0.47 C0263
113 C0132 Kaempferol-3-O-rutinoside - - - -0.73 0.45 -0.47
114 C0226 Raffinose pentahydrate D-(+)-Raffinose pentahydrate - galactolipid biosynthesis suppression,
polysaccharide biosynthesis 		0.66 0.35 -0.32