AT1G43840 : -
Query Information
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AGICode AT1G43840
Description transposable element gene
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G43840 transposable element gene 1 0.3 -0.3
2 AT2G35030 Pentatricopeptide repeat (PPR) superfamily protein 0.74 0.32 -0.31
3 AT5G29070 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion; BEST
Arabidopsis thaliana protein match is: zinc ion
binding;nucleic acid binding (TAIR:AT4G06479.1); Has 5
Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.7 0.3 -0.3
4 AT2G23390 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase
(InterPro:IPR016181); Has 2165 Blast hits to 2163 proteins
in 543 species: Archae - 0; Bacteria - 1044; Metazoa - 0;
Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes -
1088 (source: NCBI BLink).		 -0.69 0.3 -0.32
5 AT5G58770 Undecaprenyl pyrophosphate synthetase family protein -0.68 0.34 -0.32
6 AT3G21380 Mannose-binding lectin superfamily protein 0.66 0.33 -0.34
7 AT1G35790 transposable element gene 0.65 0.29 -0.34
8 AT4G00780 TRAF-like family protein -0.65 0.32 -0.33
9 AT3G16550 DEGP protease 12 DEGP protease 12 0.64 0.31 -0.31
10 AT2G28180 Cation/hydrogen exchanger family protein ATCHX8, CHX08, CATION/H+ EXCHANGER
8		 0.64 0.32 -0.32
11 AT4G39370 ubiquitin-specific protease 27 ubiquitin-specific protease 27 -0.64 0.3 -0.33
12 AT1G22015 Galactosyltransferase family protein DD46 -0.64 0.3 -0.31
13 AT2G24830 zinc finger (CCCH-type) family protein / D111/G-patch
domain-containing protein		 -0.64 0.3 -0.31
14 AT5G48790 Domain of unknown function (DUF1995) -0.63 0.31 -0.31
15 AT4G35120 Galactose oxidase/kelch repeat superfamily protein -0.63 0.31 -0.32
16 AT3G07610 Transcription factor jumonji (jmjC) domain-containing
protein		 increase in bonsai methylation 1 0.63 0.3 -0.31
17 AT5G61920 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures;
EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G67170.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.63 0.32 -0.31
18 AT3G51760 Protein of unknown function (DUF688) 0.62 0.32 -0.3
19 AT1G75250 RAD-like 6 RAD-like 6, RAD-like 6,
RADIALIS-LIKE SANT/MYB 3		 0.62 0.31 -0.34
20 AT5G38580 FBD-like domain family protein -0.61 0.33 -0.33
21 AT3G47100 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.61 0.31 -0.3
22 AT3G25050 xyloglucan endotransglucosylase/hydrolase 3 xyloglucan
endotransglucosylase/hydrolase 3		 -0.61 0.3 -0.3
23 AT3G48210 CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex,
subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to
194 proteins in 72 species: Archae - 0; Bacteria - 4;
Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other
Eukaryotes - 17 (source: NCBI BLink).		 -0.61 0.32 -0.31
24 AT3G03580 Tetratricopeptide repeat (TPR)-like superfamily protein 0.61 0.34 -0.32
25 AT1G74870 RING/U-box superfamily protein 0.61 0.3 -0.34
26 AT4G39756 Galactose oxidase/kelch repeat superfamily protein -0.61 0.34 -0.33
27 AT1G67770 terminal EAR1-like 2 terminal EAR1-like 2 -0.61 0.32 -0.32
28 AT3G14340 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.61 0.34 -0.33
29 AT2G07520 transposable element gene 0.61 0.31 -0.32
30 AT2G40990 DHHC-type zinc finger family protein -0.6 0.33 -0.31
31 AT4G04300 transposable element gene 0.6 0.31 -0.33
32 AT4G19670 RING/U-box superfamily protein -0.6 0.29 -0.33
33 AT2G26570 Plant protein of unknown function (DUF827) WEAK CHLOROPLAST MOVEMENT UNDER
BLUE LIGHT 1		 -0.6 0.3 -0.33
34 AT3G15220 Protein kinase superfamily protein -0.6 0.35 -0.3
35 AT1G32180 cellulose synthase-like D6 cellulose synthase-like D6,
CELLULOSE SYNTHASE LIKE D6,
cellulose synthase-like D6		 -0.6 0.32 -0.32
36 AT3G11380 Pentatricopeptide repeat (PPR) superfamily protein -0.6 0.31 -0.33
37 AT3G59440 Calcium-binding EF-hand family protein 0.6 0.31 -0.31
38 AT1G06270 Pentatricopeptide repeat (PPR) superfamily protein 0.6 0.31 -0.32
39 AT4G19570 Chaperone DnaJ-domain superfamily protein -0.59 0.3 -0.29
40 AT5G10320 unknown protein; Has 54 Blast hits to 53 proteins in 19
species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0;
Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.3 -0.33
41 AT4G20420 Tapetum specific protein TAP35/TAP44 -0.59 0.32 -0.31
42 AT2G02140 low-molecular-weight cysteine-rich 72 low-molecular-weight cysteine-rich
72, PDF2.6		 0.59 0.31 -0.32
43 AT1G67240 transposable element gene 0.58 0.3 -0.3
44 AT4G15755 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.58 0.34 -0.3
45 AT2G02250 phloem protein 2-B2 phloem protein 2-B2, phloem
protein 2-B2		 -0.58 0.31 -0.31
46 AT2G23640 Reticulan like protein B13 Reticulan like protein B13 0.58 0.28 -0.31
47 ATMG01020 hypothetical protein ORF153B 0.58 0.33 -0.28
48 AT3G57850 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: embryo, synergid; EXPRESSED DURING: C
globular stage; BEST Arabidopsis thaliana protein match is:
Plant self-incompatibility protein S1 family
(TAIR:AT3G57840.1); Has 7 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.58 0.3 -0.31
49 AT1G72580 unknown protein; Has 3 Blast hits to 3 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.58 0.31 -0.32
50 AT3G32917 transposable element gene -0.58 0.32 -0.32
51 AT3G03360 F-box/RNI-like superfamily protein -0.58 0.32 -0.33
52 AT4G32220 transposable element gene 0.58 0.32 -0.3
53 AT2G22000 elicitor peptide 6 precursor elicitor peptide 6 precursor -0.58 0.31 -0.32
54 AT5G06170 sucrose-proton symporter 9 sucrose-proton symporter 9,
sucrose-proton symporter 9		 -0.58 0.32 -0.32
55 AT5G25110 CBL-interacting protein kinase 25 CBL-interacting protein kinase 25,
SNF1-RELATED PROTEIN KINASE 3.25		 0.57 0.32 -0.3
56 AT2G31500 calcium-dependent protein kinase 24 calcium-dependent protein kinase
24		 -0.57 0.33 -0.3
57 AT3G58060 Cation efflux family protein 0.57 0.3 -0.31
58 AT2G03390 uvrB/uvrC motif-containing protein -0.57 0.3 -0.33
59 AT5G59660 Leucine-rich repeat protein kinase family protein -0.57 0.31 -0.32
60 AT5G33350 pseudogene, similar to P0406H10.5, nucleoid DNA-binding
protein cnd41, chloroplast - Nicotiana tabacum, PIR:T01996;
blastp match of 37% identity and 1.5e-57 P-value to
GP|9711879|dbj|BAB07973.1||AP002524 P0406H10.5 {Oryza
sativa (japonica cultivar-group)}		 -0.57 0.36 -0.3
61 AT1G34320 Protein of unknown function (DUF668) 0.57 0.3 -0.32
62 AT2G05580 Glycine-rich protein family -0.57 0.33 -0.31
63 AT2G10870 transposable element gene 0.57 0.31 -0.34
64 AT3G30260 AGAMOUS-like 79 AGAMOUS-like 79 -0.57 0.32 -0.31
65 AT1G12790 CONTAINS InterPro DOMAIN/s: RuvA domain 2-like
(InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.57 0.32 -0.33
66 AT3G10150 purple acid phosphatase 16 ATPAP16, purple acid phosphatase
16		 -0.56 0.29 -0.32
67 AT3G12890 activator of spomin::LUC2 activator of spomin::LUC2 -0.56 0.32 -0.3
68 AT3G14395 unknown protein; Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.56 0.3 -0.31
69 AT3G50990 Peroxidase superfamily protein 0.56 0.32 -0.33
70 AT5G24440 CTC-interacting domain 13 CTC-interacting domain 13 -0.56 0.34 -0.31
71 AT3G11110 RING/U-box superfamily protein -0.56 0.31 -0.34
72 AT3G44410 pseudogene, disease resistence protein, putative, similar
to disease resistance protein RPP1-WsB (Arabidopsis
thaliana) gi|3860165|gb|AAC72978		 -0.55 0.31 -0.32
73 AT1G56030 RING/U-box superfamily protein -0.55 0.32 -0.32
74 AT5G09280 Pectin lyase-like superfamily protein -0.55 0.32 -0.32
75 AT2G12520 transposable element gene 0.55 0.32 -0.34
76 AT1G19980 cytomatrix protein-related -0.55 0.32 -0.31
77 AT3G50320 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.55 0.31 -0.29
78 AT2G37000 TCP family transcription factor -0.55 0.32 -0.33
79 ATMG00740 hypothetical protein ORF100A -0.55 0.31 -0.3
80 AT1G21065 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0047
(InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins
in 1137 species: Archae - 215; Bacteria - 2154; Metazoa -
42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes
- 1191 (source: NCBI BLink).		 -0.55 0.33 -0.32
81 AT4G11770 Galactose oxidase/kelch repeat superfamily protein -0.55 0.29 -0.32
82 AT5G25860 F-box/RNI-like superfamily protein -0.55 0.32 -0.3
83 AT2G25380 pseudogene of zinc finger protein-related -0.55 0.3 -0.32
84 AT4G04000 transposable element gene 0.54 0.31 -0.33
85 AT5G60410 DNA-binding protein with MIZ/SP-RING zinc finger,
PHD-finger and SAP domain		 ATSIZ1, SIZ1 0.54 0.31 -0.31
86 AT1G53820 RING/U-box superfamily protein -0.54 0.31 -0.32
87 AT2G39640 glycosyl hydrolase family 17 protein 0.54 0.3 -0.32
88 AT5G63390 O-fucosyltransferase family protein -0.54 0.33 -0.31
89 AT1G75920 GDSL-like Lipase/Acylhydrolase superfamily protein 0.54 0.31 -0.33
90 AT5G56330 alpha carbonic anhydrase 8 alpha carbonic anhydrase 8, A.
THALIANA ALPHA CARBONIC ANHYDRASE
8		 -0.54 0.34 -0.31
91 AT5G35300 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.53 0.31 -0.3
92 AT5G57520 zinc finger protein 2 ZINC FINGER PROTEIN 2, zinc finger
protein 2		 0.53 0.31 -0.3
93 AT2G14210 AGAMOUS-like 44 AGAMOUS-like 44, ARABIDOPSIS
NITRATE REGULATED 1		 0.53 0.3 -0.31
94 AT5G06900 cytochrome P450, family 93, subfamily D, polypeptide 1 cytochrome P450, family 93,
subfamily D, polypeptide 1		 -0.53 0.31 -0.33
95 AT5G58780 Undecaprenyl pyrophosphate synthetase family protein 0.53 0.31 -0.29
96 AT5G17830 Plasma-membrane choline transporter family protein -0.53 0.31 -0.33
97 AT2G42940 Predicted AT-hook DNA-binding family protein 0.53 0.33 -0.3
98 AT2G02280 phloem protein 2-B4 phloem protein 2-B4, phloem
protein 2-B4		 0.53 0.3 -0.32
99 AT1G31960 unknown protein; Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.52 0.32 -0.32
100 AT2G02410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF901 (InterPro:IPR010298); Has 1151
Blast hits to 1151 proteins in 597 species: Archae - 0;
Bacteria - 1105; Metazoa - 0; Fungi - 0; Plants - 42;
Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).		 -0.52 0.33 -0.35
101 AT3G54520 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G54530.1); Has 72 Blast hits
to 70 proteins in 20 species: Archae - 0; Bacteria - 5;
Metazoa - 8; Fungi - 2; Plants - 18; Viruses - 0; Other
Eukaryotes - 39 (source: NCBI BLink).		 0.52 0.3 -0.3
102 AT4G21323 Subtilase family protein 0.52 0.3 -0.33
103 AT5G07230 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.52 0.3 -0.3
104 AT1G12130 Flavin-binding monooxygenase family protein 0.52 0.29 -0.31
105 AT4G20250 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.52 0.29 -0.32
106 AT1G30460 cleavage and polyadenylation specificity factor 30 ARABIDOPSIS THALIANA CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR
30, cleavage and polyadenylation
specificity factor 30		 0.52 0.32 -0.34
107 ATMG01240 hypothetical protein ORF100C 0.52 0.33 -0.32
108 AT1G79200 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.52 0.32 -0.31
109 AT5G52480 RNI-like superfamily protein 0.52 0.33 -0.32
110 AT1G34580 Major facilitator superfamily protein 0.52 0.33 -0.31
111 AT4G21490 NAD(P)H dehydrogenase B3 NAD(P)H dehydrogenase B3 0.52 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
112 C0085 Digalactosyldiacylglycerol-36:6 - Digalactosyldiacylglycerol-36:6 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.79 0.51 -0.49 C0085
113 C0247 Sulfoquinovosyldiacylglycerol-34:3 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis 0.77 0.5 -0.48 C0247
114 C0199 Phosphatidylethanolamine-36:6 - Phosphatidylethanolamine-36:6 phospholipid biosynthesis II,
linoleate biosynthesis I,
phosphatidylethanolamine biosynthesis I,
phosphatidylethanolamine biosynthesis II,
glutathione redox reactions I 		0.75 0.5 -0.52 C0199
115 C0084 Digalactosyldiacylglycerol-36:5 - Digalactosyldiacylglycerol-36:5 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.74 0.49 -0.49 C0084
116 C0251 Sulfoquinovosyldiacylglycerol-36:6 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis 0.73 0.49 -0.52 C0251
117 C0208 Phosphatidylinositol-34:2 - Phosphatidylinositol-34:2 3-phosphoinositide biosynthesis,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
sphingolipid biosynthesis,
linoleate biosynthesis I,
cutin biosynthesis,
glycerophosphodiester degradation,
phosphate acquisition,
glutathione redox reactions I 		0.67 0.5 -0.49 C0208
118 C0012 n-Eicosanoic acid - Arachidate fatty acid activation,
fatty acid ω-oxidation,
sporopollenin precursor biosynthesis,
acyl-ACP thioesterase pathway,
ceramide degradation,
fatty acid α-oxidation,
fatty acid ω-oxidation,
phospholipases,
triacylglycerol degradation 		0.67 0.46 -0.43 C0012
119 C0082 Digalactosyldiacylglycerol-36:3 - Digalactosyldiacylglycerol-36:3 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.62 0.5 -0.47 C0082
120 C0078 Digalactosyldiacylglycerol-34:3 - Digalactosyldiacylglycerol-34:3 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.59 0.32 -0.32
121 C0077 Digalactosyldiacylglycerol-34:2 - Digalactosyldiacylglycerol-34:2 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.57 0.34 -0.33
122 C0246 Sulfoquinovosyldiacylglycerol-34:2 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis 0.56 0.35 -0.33 C0246
123 C0201 Phosphatidylglycerol-32:1 - Phosphatidylglycerol-32:1 cardiolipin biosynthesis II,
linoleate biosynthesis I,
glycerophosphodiester degradation,
glutathione redox reactions I 		0.55 0.34 -0.34