AT1G53120 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT1G53120
Description RNA-binding S4 domain-containing protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G53120 RNA-binding S4 domain-containing protein 1 0.32 -0.31
2 AT3G59980 Nucleic acid-binding, OB-fold-like protein 0.82 0.31 -0.34
3 AT1G18440 Peptidyl-tRNA hydrolase family protein 0.82 0.32 -0.31
4 AT3G20250 pumilio 5 pumilio 5, pumilio 5 -0.81 0.31 -0.32
5 AT2G02740 ssDNA-binding transcriptional regulator A. THALIANA WHIRLY 3, PLASTID
TRANSCRIPTIONALLY ACTIVE11, WHIRLY
3		 0.81 0.34 -0.32
6 AT2G43630 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
thylakoid membrane, chloroplast, nucleus, chloroplast
envelope; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67
Blast hits to 67 proteins in 20 species: Archae - 0;
Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses
- 2; Other Eukaryotes - 2 (source: NCBI BLink).		 0.8 0.33 -0.32
7 AT2G42770 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 0.79 0.3 -0.31
8 AT5G24020 septum site-determining protein (MIND) ACCUMULATION AND REPLICATION OF
CHLOROPLASTS 11, ATMIND1, MIND		 0.78 0.31 -0.3
9 AT5G46800 Mitochondrial substrate carrier family protein A BOUT DE SOUFFLE 0.78 0.31 -0.34
10 AT2G16720 myb domain protein 7 ARABIDOPSIS THALIANA MYB DOMAIN
PROTEIN 7, ATY49, myb domain
protein 7		 -0.78 0.31 -0.32
11 AT1G24360 NAD(P)-binding Rossmann-fold superfamily protein 0.77 0.34 -0.31
12 AT5G24650 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 0.77 0.31 -0.31
13 AT3G58830 haloacid dehalogenase (HAD) superfamily protein 0.77 0.31 -0.3
14 AT1G15140 FAD/NAD(P)-binding oxidoreductase 0.76 0.31 -0.32
15 AT2G35650 cellulose synthase like cellulose synthase like, ATCSLA7,
CSLA07, cellulose synthase like,
CELLULOSE SYNTHASE LIKE A7		 0.76 0.31 -0.33
16 AT5G65360 Histone superfamily protein 0.76 0.3 -0.32
17 AT5G44170 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.75 0.3 -0.31
18 AT1G66520 formyltransferase, putative pigment defective 194 0.75 0.3 -0.33
19 AT5G20850 RAS associated with diabetes protein 51 RAS associated with diabetes
protein 51, RAS associated with
diabetes protein 51		 0.75 0.32 -0.3
20 AT1G23120 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.74 0.34 -0.31
21 AT5G62980 Dihydroneopterin aldolase FOLB2 0.74 0.3 -0.31
22 AT2G22970 serine carboxypeptidase-like 11 serine carboxypeptidase-like 11 -0.73 0.32 -0.32
23 AT2G04360 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink).		 0.73 0.31 -0.32
24 AT1G45110 Tetrapyrrole (Corrin/Porphyrin) Methylases 0.73 0.33 -0.32
25 AT1G09160 Protein phosphatase 2C family protein 0.73 0.32 -0.31
26 AT5G65660 hydroxyproline-rich glycoprotein family protein -0.73 0.29 -0.33
27 AT2G22660 Protein of unknown function (duplicated DUF1399) -0.73 0.3 -0.33
28 AT1G08460 histone deacetylase 8 ATHDA8, histone deacetylase 8,
HISTONE DEACETYLASE 8		 -0.72 0.33 -0.34
29 AT3G21240 4-coumarate:CoA ligase 2 4-coumarate:CoA ligase 2, AT4CL2 -0.71 0.32 -0.33
30 AT5G13010 RNA helicase family protein embryo defective 3011 -0.7 0.31 -0.32
31 AT4G34860 Plant neutral invertase family protein alkaline/neutral invertase B -0.7 0.31 -0.29
32 AT3G29575 ABI five binding protein 3 ABI five binding protein 3 -0.7 0.34 -0.31
33 AT3G16857 response regulator 1 response regulator 1, response
regulator 1		 -0.68 0.32 -0.3
34 AT1G55240 Family of unknown function (DUF716) -0.68 0.31 -0.32
35 AT5G53890 phytosylfokine-alpha receptor 2 AtPSKR2, phytosylfokine-alpha
receptor 2		 -0.67 0.36 -0.31
36 AT2G25940 alpha-vacuolar processing enzyme alpha-vacuolar processing enzyme,
ALPHAVPE		 -0.67 0.33 -0.31
37 AT1G10480 zinc finger protein 5 zinc finger protein 5 -0.66 0.31 -0.33
38 AT3G03170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G24890.1); Has 184 Blast hits
to 184 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.31 -0.3
39 AT2G28910 CAX interacting protein 4 CAX interacting protein 4 -0.66 0.33 -0.32
40 AT5G53990 UDP-Glycosyltransferase superfamily protein -0.65 0.33 -0.32
41 AT1G59740 Major facilitator superfamily protein -0.64 0.34 -0.31
42 AT2G18360 alpha/beta-Hydrolases superfamily protein -0.64 0.32 -0.31
43 AT1G03790 Zinc finger C-x8-C-x5-C-x3-H type family protein SOMNUS -0.63 0.31 -0.29
44 AT1G61820 beta glucosidase 46 beta glucosidase 46 -0.63 0.32 -0.32
45 AT3G12120 fatty acid desaturase 2 fatty acid desaturase 2 -0.63 0.31 -0.32
46 AT4G31100 wall-associated kinase, putative -0.63 0.29 -0.31
47 AT3G12500 basic chitinase basic chitinase, B-CHI, CHI-B,
basic chitinase,
PATHOGENESIS-RELATED 3,
PATHOGENESIS-RELATED 3		 -0.62 0.3 -0.32
48 AT3G09910 RAB GTPase homolog C2B ATRAB18C, RAB GTPase homolog C2B,
RAB GTPase homolog C2B		 -0.62 0.33 -0.32
49 AT2G47810 nuclear factor Y, subunit B5 nuclear factor Y, subunit B5 -0.62 0.32 -0.32
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
50 C0052 Adenosine - Adenosine adenine and adenosine salvage VI,
S-adenosyl-L-methionine cycle II,
cytokinins degradation,
methionine degradation I (to homocysteine),
adenine and adenosine salvage II 		-0.63 0.33 -0.33 C0052