AT1G44910 : pre-mRNA-processing protein 40A
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT1G44910
Description pre-mRNA-processing protein 40A
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G44910 pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A,
pre-mRNA-processing protein 40A		 1 0.32 -0.31
2 AT1G47310 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 45
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.77 0.32 -0.29
3 AT4G13750 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 EMBRYO DEFECTIVE 2597, NO VEIN 0.75 0.31 -0.31
4 AT3G06250 FAR1-related sequence 7 FAR1-related sequence 7 0.75 0.29 -0.31
5 AT4G23950 Galactose-binding protein 0.74 0.32 -0.31
6 AT2G02400 NAD(P)-binding Rossmann-fold superfamily protein -0.74 0.32 -0.32
7 AT3G25655 inflorescence deficient in abscission (IDA)-like 1 inflorescence deficient in
abscission (IDA)-like 1		 0.73 0.34 -0.31
8 AT4G16444 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
CHD5-like protein (InterPro:IPR007514); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.73 0.35 -0.32
9 AT4G00355 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits
to 97 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 ATG8-interacting protein 2 -0.73 0.32 -0.31
10 AT4G28370 RING/U-box superfamily protein 0.73 0.32 -0.32
11 AT5G17270 Protein prenylyltransferase superfamily protein 0.72 0.32 -0.33
12 AT5G37370 PRP38 family protein ATSRL1 0.72 0.31 -0.33
13 AT5G58970 uncoupling protein 2 uncoupling protein 2, uncoupling
protein 2		 -0.72 0.34 -0.33
14 AT5G06839 bZIP transcription factor family protein bZIP65, TGACG (TGA) motif-binding
protein 10		 0.72 0.33 -0.31
15 AT1G33410 SUPPRESSOR OF AUXIN RESISTANCE1 ARABIDOPSIS NUCLEOPORIN 160,
NUCLEOPORIN 160, SUPPRESSOR OF
AUXIN RESISTANCE1		 0.71 0.31 -0.34
16 AT2G47150 NAD(P)-binding Rossmann-fold superfamily protein 0.71 0.33 -0.32
17 AT4G31160 DDB1-CUL4 associated factor 1 DDB1-CUL4 associated factor 1 0.71 0.32 -0.3
18 AT3G42850 Mevalonate/galactokinase family protein 0.7 0.32 -0.34
19 AT5G15700 DNA/RNA polymerases superfamily protein 0.7 0.33 -0.33
20 AT3G49710 Pentatricopeptide repeat (PPR) superfamily protein 0.7 0.29 -0.32
21 AT5G56460 Protein kinase superfamily protein 0.7 0.31 -0.31
22 AT1G68990 male gametophyte defective 3 male gametophyte defective 3 0.7 0.32 -0.36
23 AT3G21430 DNA binding ALWAYS EARLY 3, ARABIDOPSIS
THALIANA ALWAYS EARLY 3		 0.7 0.32 -0.32
24 AT2G14800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G44713.1); Has 41 Blast hits
to 38 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 7; Fungi - 2; Plants - 16; Viruses - 0; Other
Eukaryotes - 16 (source: NCBI BLink).		 0.7 0.31 -0.31
25 AT3G49400 Transducin/WD40 repeat-like superfamily protein 0.69 0.33 -0.3
26 AT4G16280 RNA binding;abscisic acid binding FCA 0.69 0.32 -0.3
27 AT5G38610 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.69 0.3 -0.34
28 AT1G09020 homolog of yeast sucrose nonfermenting 4 ATSNF4, homolog of yeast sucrose
nonfermenting 4		 0.69 0.31 -0.3
29 AT1G27600 Nucleotide-diphospho-sugar transferases superfamily protein IRREGULAR XYLEM 9 Homolog,
IRREGULAR XYLEM 9-LIKE		 -0.69 0.31 -0.32
30 AT4G17140 pleckstrin homology (PH) domain-containing protein 0.69 0.33 -0.32
31 AT1G66960 Terpenoid cyclases family protein LUP5 0.69 0.32 -0.31
32 AT1G77300 histone methyltransferases(H3-K4 specific);histone
methyltransferases(H3-K36 specific)		 ASH1 HOMOLOG 2, CAROTENOID
CHLOROPLAST REGULATORY1, EARLY
FLOWERING IN SHORT DAYS, LAZARUS
2, SET DOMAIN GROUP 8		 0.69 0.31 -0.33
33 AT3G10220 tubulin folding cofactor B EMBRYO DEFECTIVE 2804 -0.69 0.31 -0.3
34 AT5G43550 F-box associated ubiquitination effector family protein 0.69 0.32 -0.31
35 AT1G62260 mitochondrial editing factor 9 mitochondrial editing factor 9 0.68 0.32 -0.32
36 AT5G23460 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.68 0.34 -0.31
37 AT1G56145 Leucine-rich repeat transmembrane protein kinase 0.68 0.31 -0.31
38 AT2G44060 Late embryogenesis abundant protein, group 2 -0.68 0.31 -0.32
39 AT1G09230 RNA-binding (RRM/RBD/RNP motifs) family protein 0.68 0.31 -0.3
40 AT3G04810 NIMA-related kinase 2 NIMA-related kinase 2,
NIMA-related kinase 2		 0.68 0.33 -0.31
41 AT3G07660 Kinase-related protein of unknown function (DUF1296) 0.68 0.32 -0.3
42 AT2G41520 Heat shock protein DnaJ with tetratricopeptide repeat tetratricopeptide repeat 15 0.68 0.33 -0.31
43 AT3G50250 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G19270.1); Has 6 Blast hits to
5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.67 0.33 -0.31
44 AT5G12100 pentatricopeptide (PPR) repeat-containing protein 0.67 0.31 -0.31
45 AT5G49470 PAS domain-containing protein tyrosine kinase family
protein		 0.67 0.32 -0.34
46 AT1G11270 F-box and associated interaction domains-containing protein -0.67 0.3 -0.3
47 AT1G78940 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 0.67 0.32 -0.32
48 AT5G61960 MEI2-like protein 1 MEI2-like protein 1, MEI2-like
protein 1		 0.67 0.32 -0.31
49 AT5G17690 like heterochromatin protein (LHP1) AtLHP1, LIKE HETEROCHROMATIN
PROTEIN 1, TERMINAL FLOWER 2		 0.66 0.32 -0.34
50 AT1G01040 dicer-like 1 ABNORMAL SUSPENSOR 1, DICER-LIKE
1, CARPEL FACTORY, dicer-like 1,
EMBRYO DEFECTIVE 60, EMBRYO
DEFECTIVE 76, SHORT INTEGUMENTS 1,
SUSPENSOR 1		 0.66 0.33 -0.32
51 AT4G30760 Putative endonuclease or glycosyl hydrolase -0.66 0.31 -0.33
52 AT4G05500 pseudogene, F-box protein family, AtFBL9/AtFBL23, contains
similarity to N7 protein GI:3273101 from (Medicago
truncatula); blastp match of 39% identity and 1.6e-34
P-value to GP|3273101|emb|CAA76808.1||Y17613 N7 protein
{Medicago truncatula}		 0.66 0.32 -0.3
53 AT5G11460 Protein of unknown function (DUF581) -0.66 0.31 -0.31
54 AT5G28590 DNA-binding family protein 0.66 0.3 -0.33
55 AT1G17720 Protein phosphatase 2A, regulatory subunit PR55 ATB BETA 0.66 0.32 -0.3
56 AT5G27660 Trypsin family protein with PDZ domain 0.66 0.31 -0.31
57 AT2G24640 ubiquitin-specific protease 19 ubiquitin-specific protease 19 0.66 0.31 -0.32
58 AT5G59910 Histone superfamily protein HTB4 -0.65 0.3 -0.31
59 AT4G10260 pfkB-like carbohydrate kinase family protein 0.65 0.31 -0.33
60 AT2G02560 cullin-associated and neddylation dissociated CULLIN-ASSOCIATED AND NEDDYLATION
DISSOCIATED 1, cullin-associated
and neddylation dissociated, ETA2,
HEMIVENATA, TIP120		 0.65 0.32 -0.33
61 AT5G47520 RAB GTPase homolog A5A RAB GTPase homolog A5A, RAB GTPase
homolog A5A		 -0.65 0.33 -0.32
62 AT5G53635 F-box/RNI-like/FBD-like domains-containing protein 0.65 0.32 -0.31
63 AT2G22760 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.65 0.33 -0.32
64 AT3G51120 DNA binding;zinc ion binding;nucleic acid binding;nucleic
acid binding		 0.64 0.33 -0.34
65 AT3G62230 F-box family protein DUO1-activated F-box 1 -0.64 0.33 -0.34
66 AT5G27540 MIRO-related GTP-ase 1 embryo defective 2473,
MIRO-related GTP-ase 1		 0.64 0.32 -0.33
67 AT1G70180 Sterile alpha motif (SAM) domain-containing protein 0.64 0.32 -0.34
68 AT2G41530 S-formylglutathione hydrolase ARABIDOPSIS THALIANA
S-FORMYLGLUTATHIONE HYDROLASE,
S-formylglutathione hydrolase		 -0.64 0.29 -0.33
69 AT2G13760 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G24380.1); Has 68 Blast hits
to 68 proteins in 20 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 4; Plants - 43; Viruses - 0; Other
Eukaryotes - 19 (source: NCBI BLink).		 -0.64 0.31 -0.32
70 AT2G34440 AGAMOUS-like 29 AGAMOUS-like 29 -0.64 0.33 -0.33
71 AT5G04120 Phosphoglycerate mutase family protein 0.64 0.3 -0.32
72 AT1G51880 root hair specific 6 root hair specific 6 -0.64 0.33 -0.34
73 AT5G15020 SIN3-like 2 SIN3-like 2 0.64 0.33 -0.32
74 AT3G42460 transposable element gene 0.63 0.3 -0.33
75 AT2G30620 winged-helix DNA-binding transcription factor family
protein		 -0.63 0.3 -0.3
76 AT4G38200 SEC7-like guanine nucleotide exchange family protein 0.63 0.31 -0.31
77 AT3G23060 RING/U-box superfamily protein 0.63 0.3 -0.31
78 AT5G45070 phloem protein 2-A8 phloem protein 2-A8, phloem
protein 2-A8		 0.63 0.31 -0.3
79 AT1G64790 ILITYHIA ILITYHIA 0.63 0.33 -0.32
80 AT1G10320 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.63 0.33 -0.32
81 AT1G48970 NagB/RpiA/CoA transferase-like superfamily protein 0.63 0.3 -0.31
82 AT1G48410 Stabilizer of iron transporter SufD / Polynucleotidyl
transferase		 ARGONAUTE 1 0.63 0.32 -0.3
83 AT5G46210 cullin4 ATCUL4, cullin4 0.63 0.3 -0.33
84 AT1G03910 EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein,
cactus-binding domain, C-terminal (InterPro:IPR019134),
Cactin, central region (InterPro:IPR018816); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins
in 452 species: Archae - 31; Bacteria - 352; Metazoa -
6006; Fungi - 1138; Plants - 599; Viruses - 33; Other
Eukaryotes - 3552 (source: NCBI BLink).		 0.63 0.32 -0.3
85 AT1G71090 Auxin efflux carrier family protein -0.63 0.32 -0.3
86 AT2G32250 FAR1-related sequence 2 FAR1-related sequence 2 0.63 0.34 -0.3
87 AT5G63135 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.63 0.31 -0.34
88 AT3G09250 Nuclear transport factor 2 (NTF2) family protein -0.63 0.32 -0.32
89 AT1G48360 zinc ion binding;nucleic acid binding;hydrolases, acting on
acid anhydrides, in phosphorus-containing anhydrides		 0.62 0.33 -0.3
90 AT5G13390 no exine formation 1 NO EXINE FORMATION 1 0.62 0.31 -0.31
91 AT4G39160 Homeodomain-like superfamily protein 0.62 0.3 -0.32
92 AT3G58810 metal tolerance protein A2 ARABIDOPSIS METAL TOLERANCE
PROTEIN 3, ATMTPA2, METAL
TOLERANCE PROTEIN 3, metal
tolerance protein A2		 0.62 0.32 -0.31
93 AT5G50500 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.62 0.29 -0.33
94 AT5G22450 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.62 0.3 -0.3
95 AT3G20040 Hexokinase ATHXK4, HEXOKINASE-LIKE 2 0.62 0.33 -0.33
96 AT3G04220 Disease resistance protein (TIR-NBS-LRR class) family 0.62 0.31 -0.32
97 AT3G46070 C2H2-type zinc finger family protein 0.62 0.32 -0.32
98 AT4G38760 Protein of unknown function (DUF3414) 0.62 0.33 -0.32
99 AT1G12550 D-isomer specific 2-hydroxyacid dehydrogenase family
protein		 hydroxypyruvate reductase 3 -0.62 0.3 -0.32
100 AT4G17330 G2484-1 protein G2484-1 protein, G2484-1 protein 0.62 0.32 -0.32
101 AT1G05520 Sec23/Sec24 protein transport family protein 0.62 0.3 -0.31
102 AT4G40050 Protein of unknown function (DUF3550/UPF0682) 0.62 0.3 -0.32
103 ATMG00070 NADH dehydrogenase subunit 9 NADH dehydrogenase subunit 9 0.62 0.32 -0.33
104 AT1G17350 NADH:ubiquinone oxidoreductase intermediate-associated
protein 30		 -0.62 0.3 -0.29
105 AT5G53440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 0.62 0.32 -0.3
106 AT3G20720 unknown protein; Has 184 Blast hits to 181 proteins in 66
species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi -
0; Plants - 40; Viruses - 0; Other Eukaryotes - 5 (source:
NCBI BLink).		 0.62 0.32 -0.33
107 AT1G80930 MIF4G domain-containing protein / MA3 domain-containing
protein		 0.62 0.32 -0.31
108 AT1G60350 NAC domain containing protein 24 NAC domain containing protein 24,
NAC domain containing protein 24		 -0.61 0.29 -0.31
109 AT1G74320 Protein kinase superfamily protein -0.61 0.31 -0.31
110 AT5G57260 cytochrome P450, family 71, subfamily B, polypeptide 10 cytochrome P450, family 71,
subfamily B, polypeptide 10		 -0.61 0.34 -0.3
111 AT5G09630 LisH/CRA/RING-U-box domains-containing protein -0.61 0.33 -0.31
112 AT5G22400 Rho GTPase activating protein with PAK-box/P21-Rho-binding
domain		 -0.6 0.31 -0.3
113 AT4G07740 Protein of unknown function (DUF3287) -0.6 0.32 -0.3
114 AT1G67100 LOB domain-containing protein 40 LOB domain-containing protein 40 -0.6 0.31 -0.33
115 AT3G05860 MADS-box transcription factor family protein -0.6 0.3 -0.31
116 AT1G68260 Thioesterase superfamily protein -0.6 0.32 -0.33
117 AT3G13720 PRA1 (Prenylated rab acceptor) family protein PRENYLATED RAB ACCEPTOR 1.F3, PRA8 -0.6 0.31 -0.31
118 AT3G61530 Phosphoenolpyruvate carboxylase family protein PANB2 -0.6 0.34 -0.32
119 AT1G57790 F-box family protein -0.59 0.3 -0.3
120 AT1G60710 NAD(P)-linked oxidoreductase superfamily protein ATB2 -0.59 0.31 -0.3
121 AT5G54540 Uncharacterised conserved protein (UCP012943) -0.59 0.31 -0.3
122 AT3G14220 GDSL-like Lipase/Acylhydrolase superfamily protein -0.59 0.34 -0.32
123 AT5G08100 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein		 asparaginase A1 -0.59 0.32 -0.33
124 AT1G06760 winged-helix DNA-binding transcription factor family
protein		 -0.59 0.31 -0.31
125 AT1G05770 Mannose-binding lectin superfamily protein -0.59 0.34 -0.32
126 AT1G24240 Ribosomal protein L19 family protein -0.58 0.31 -0.33
127 AT1G21220 transposable element gene -0.58 0.31 -0.32
128 AT2G32560 F-box family protein -0.58 0.35 -0.3
129 AT5G46590 NAC domain containing protein 96 NAC domain containing protein 96,
NAC domain containing protein 96		 -0.58 0.31 -0.32
130 AT2G22090 RNA-binding (RRM/RBD/RNP motifs) family protein UBA1A -0.58 0.32 -0.31
131 AT4G16447 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.57 0.3 -0.31
132 AT1G48330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits
to 40 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.32 -0.3
133 AT3G06470 GNS1/SUR4 membrane protein family -0.57 0.33 -0.31
134 AT2G43350 glutathione peroxidase 3 glutathione peroxidase 3,
glutathione peroxidase 3		 -0.57 0.33 -0.3
135 AT1G51360 dimeric A/B barrel domainS-protein 1 DIMERIC A/B BARREL DOMAINS-PROTEIN
1, dimeric A/B barrel
domainS-protein 1		 -0.57 0.33 -0.28
136 AT4G33580 beta carbonic anhydrase 5 A. THALIANA BETA CARBONIC
ANHYDRASE 5, beta carbonic
anhydrase 5		 -0.56 0.32 -0.32
137 AT1G26860 transposable element gene -0.56 0.31 -0.34
138 AT2G46000 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Mesoderm development candidate 2 (InterPro:IPR019330); Has
31 Blast hits to 31 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.31 -0.31
139 AT5G39080 HXXXD-type acyl-transferase family protein -0.56 0.31 -0.29
140 AT4G32960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G32970.1); Has 106 Blast hits
to 106 proteins in 39 species: Archae - 0; Bacteria - 0;
Metazoa - 62; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 7 (source: NCBI BLink).		 -0.56 0.34 -0.29
141 AT2G30590 WRKY DNA-binding protein 21 WRKY DNA-binding protein 21 -0.56 0.32 -0.32
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
142 C0105 Glutathione disulfide - Glutathione disulfide sulfate reduction II (assimilatory),
selenate reduction,
glutathione redox reactions I,
ascorbate glutathione cycle,
glutathione redox reactions II 		0.75 0.42 -0.46 C0105
143 C0124 Isonicotinic acid - - - 0.74 0.46 -0.45