AT1G05460 : SILENCING DEFECTIVE
Query Information
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AGICode AT1G05460
Description P-loop containing nucleoside triphosphate hydrolases superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G05460 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 SILENCING DEFECTIVE 1 0.31 -0.31
2 AT3G30300 O-fucosyltransferase family protein 0.71 0.32 -0.3
3 AT4G14150 phragmoplast-associated kinesin-related protein 1 KINESIN-12A,
phragmoplast-associated
kinesin-related protein 1		 0.71 0.31 -0.3
4 AT2G17720 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 prolyl 4-hydroxylase 5 -0.71 0.31 -0.34
5 AT5G61220 LYR family of Fe/S cluster biogenesis protein -0.7 0.31 -0.33
6 AT3G58180 ARM repeat superfamily protein -0.69 0.34 -0.31
7 AT4G20910 double-stranded RNA binding protein-related / DsRBD
protein-related		 CORYMBOSA 2, HUA ENHANCER 1 0.69 0.31 -0.3
8 AT3G53540 unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana
protein match is: Protein of unknown function (DUF3741)
(TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in
206 species: Archae - 2; Bacteria - 409; Metazoa - 304;
Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes -
485 (source: NCBI BLink).		 0.68 0.3 -0.32
9 AT5G63700 zinc ion binding;DNA binding 0.68 0.29 -0.3
10 AT5G49990 Xanthine/uracil permease family protein 0.67 0.32 -0.33
11 AT1G22060 LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: FBD, F-box and Leucine Rich
Repeat domains containing protein (TAIR:AT1G22000.1); Has
84739 Blast hits to 38714 proteins in 2257 species: Archae
- 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706;
Plants - 4675; Viruses - 308; Other Eukaryotes - 18553
(source: NCBI BLink).		 0.67 0.31 -0.33
12 AT3G62810 complex 1 family protein / LVR family protein -0.67 0.34 -0.3
13 AT5G56590 O-Glycosyl hydrolases family 17 protein 0.66 0.3 -0.33
14 AT5G50370 Adenylate kinase family protein -0.66 0.31 -0.31
15 AT2G45240 methionine aminopeptidase 1A methionine aminopeptidase 1A -0.66 0.34 -0.29
16 AT3G26740 CCR-like CCR-like 0.66 0.31 -0.32
17 AT5G16060 Cytochrome c oxidase biogenesis protein Cmc1-like -0.65 0.32 -0.31
18 AT1G55350 calpain-type cysteine protease family ATDEK1, DEFECTIVE KERNEL 1, embryo
defective 1275, EMBRYO DEFECTIVE
80		 0.65 0.3 -0.31
19 AT4G01100 adenine nucleotide transporter 1 adenine nucleotide transporter 1 -0.65 0.3 -0.32
20 AT3G03420 Ku70-binding family protein -0.65 0.33 -0.31
21 AT3G27890 NADPH:quinone oxidoreductase NADPH:quinone oxidoreductase -0.65 0.32 -0.34
22 AT5G54900 RNA-binding protein 45A RNA-binding protein 45A,
RNA-binding protein 45A		 -0.65 0.33 -0.32
23 AT5G43170 zinc-finger protein 3 zinc-finger protein 3, zinc-finger
protein 3		 -0.64 0.31 -0.32
24 AT1G25520 Uncharacterized protein family (UPF0016) -0.63 0.31 -0.33
25 AT1G29240 Protein of unknown function (DUF688) 0.63 0.33 -0.31
26 AT1G04150 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 0.63 0.33 -0.28
27 AT3G18760 Translation elongation factor EF1B/ribosomal protein S6
family protein		 -0.63 0.31 -0.32
28 AT5G32460 Transcriptional factor B3 family protein 0.63 0.32 -0.36
29 AT2G35110 transcription activators GNARLED, NCK-ASSOCIATED PROTEIN 1,
NAPP		 0.63 0.31 -0.32
30 AT3G02320 N2,N2-dimethylguanosine tRNA methyltransferase -0.62 0.32 -0.29
31 AT1G73570 HCP-like superfamily protein 0.62 0.32 -0.3
32 AT1G27435 unknown protein; Has 16 Blast hits to 16 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.29 -0.32
33 AT3G49880 glycosyl hydrolase family protein 43 0.62 0.31 -0.31
34 AT4G00585 unknown protein; Has 47 Blast hits to 47 proteins in 22
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7;
Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 -0.62 0.31 -0.31
35 AT5G14030 translocon-associated protein beta (TRAPB) family protein -0.62 0.32 -0.31
36 AT3G09490 Tetratricopeptide repeat (TPR)-like superfamily protein -0.62 0.33 -0.32
37 AT2G45790 phosphomannomutase PHOSPHOMANNOMUTASE,
phosphomannomutase		 -0.62 0.34 -0.3
38 AT1G09330 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
integral to membrane; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF846, eukaryotic
(InterPro:IPR008564); Has 518 Blast hits to 518 proteins in
206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi
- 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107
(source: NCBI BLink).		 -0.62 0.32 -0.31
39 AT1G44780 CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ
(InterPro:IPR019098); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G08310.1); Has 18105
Blast hits to 11200 proteins in 808 species: Archae - 37;
Bacteria - 1195; Metazoa - 7724; Fungi - 1727; Plants -
674; Viruses - 183; Other Eukaryotes - 6565 (source: NCBI
BLink).		 0.61 0.32 -0.32
40 AT1G19360 Nucleotide-diphospho-sugar transferase family protein reduced residual arabinose 3 -0.61 0.33 -0.3
41 AT1G65390 phloem protein 2 A5 phloem protein 2 A5, phloem
protein 2 A5		 -0.61 0.33 -0.3
42 AT2G27950 Ring/U-Box superfamily protein 0.61 0.34 -0.31
43 AT2G44065 Ribosomal protein L2 family -0.61 0.33 -0.31
44 AT3G48140 B12D protein -0.61 0.33 -0.32
45 AT4G27270 Quinone reductase family protein -0.61 0.32 -0.3
46 AT1G52200 PLAC8 family protein -0.61 0.32 -0.31
47 AT2G45340 Leucine-rich repeat protein kinase family protein 0.61 0.32 -0.32
48 AT2G33470 glycolipid transfer protein 1 ARABIDOPSIS GLYCOLIPID TRANSFER
PROTEIN 1, glycolipid transfer
protein 1		 -0.6 0.31 -0.32
49 AT3G05070 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18
(InterPro:IPR013169); Has 292 Blast hits to 292 proteins in
153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi
- 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42
(source: NCBI BLink).		 -0.6 0.33 -0.33
50 AT2G16390 SNF2 domain-containing protein / helicase domain-containing
protein		 CHR35, DEFECTIVE IN MERISTEM
SILENCING 1, DEFECTIVE IN
RNA-DIRECTED DNA METHYLATION 1		 0.6 0.32 -0.31
51 AT3G22890 ATP sulfurylase 1 ATP sulfurylase 1 -0.6 0.34 -0.35
52 AT5G17060 ADP-ribosylation factor B1B ADP-ribosylation factor B1B,
ADP-ribosylation factor B1B		 -0.6 0.3 -0.31
53 AT4G29350 profilin 2 profilin 2, PROFILIN 2, PROFILIN 2 -0.6 0.33 -0.31
54 AT5G19180 E1 C-terminal related 1 E1 C-terminal related 1 -0.6 0.32 -0.32
55 AT3G61900 SAUR-like auxin-responsive protein family 0.6 0.31 -0.32
56 AT2G46540 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.6 0.32 -0.31
57 AT4G30060 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.6 0.31 -0.31
58 AT1G15940 Tudor/PWWP/MBT superfamily protein 0.6 0.33 -0.34
59 AT4G24830 arginosuccinate synthase family -0.6 0.3 -0.33
60 AT1G15120 Ubiquinol-cytochrome C reductase hinge protein -0.6 0.31 -0.31
61 AT3G05230 Signal peptidase subunit -0.6 0.31 -0.32
62 AT1G20050 C-8,7 sterol isomerase HYDRA1 -0.59 0.31 -0.3
63 AT1G63290 Aldolase-type TIM barrel family protein -0.59 0.32 -0.31
64 AT1G04070 translocase of outer membrane 22-I ATTOM22-I, translocase of outer
membrane 22-I		 -0.59 0.3 -0.3
65 AT2G33440 RNA-binding (RRM/RBD/RNP motifs) family protein 0.58 0.31 -0.33
66 AT4G33890 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G14850.1); Has 133 Blast hits
to 131 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 2; Plants - 129; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.58 0.33 -0.32
67 AT3G52730 ubiquinol-cytochrome C reductase UQCRX/QCR9-like family
protein		 -0.58 0.34 -0.31
68 AT1G08600 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATRX, CHR20 0.58 0.31 -0.33
69 AT1G24095 Putative thiol-disulphide oxidoreductase DCC -0.58 0.3 -0.32
70 AT4G24680 modifier of snc1 MODIFIER OF snc1 0.58 0.31 -0.31
71 AT4G31200 SWAP (Suppressor-of-White-APricot)/surp RNA-binding
domain-containing protein		 0.58 0.31 -0.32
72 AT4G29735 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0197
(InterPro:IPR007915); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.57 0.29 -0.34
73 AT2G25270 unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN:
18 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 0.57 0.31 -0.33
74 AT2G35720 DNAJ heat shock N-terminal domain-containing protein ORIENTATION UNDER VERY LOW
FLUENCES OF LIGHT 1		 -0.57 0.31 -0.32
75 AT2G43680 IQ-domain 14 IQ-domain 14 0.57 0.3 -0.32
76 AT3G17740 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF1740
(InterPro:IPR013633); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast
hits to 335 proteins in 133 species: Archae - 1; Bacteria -
0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0;
Other Eukaryotes - 38 (source: NCBI BLink).		 0.57 0.32 -0.33
77 AT2G20210 RNI-like superfamily protein 0.57 0.3 -0.33
78 AT5G44180 Homeodomain-like transcriptional regulator 0.56 0.33 -0.31
79 AT1G47830 SNARE-like superfamily protein -0.56 0.29 -0.31
80 AT1G43850 SEUSS transcriptional co-regulator seuss 0.56 0.3 -0.3
81 AT1G66680 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 AR401 -0.56 0.3 -0.34
82 AT4G29660 embryo defective 2752 EMBRYO DEFECTIVE 2752 -0.56 0.31 -0.32
83 AT1G67350 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.56 0.34 -0.32
84 AT1G31080 F-box family protein -0.56 0.32 -0.31
85 AT5G20390 Glycosyl hydrolase superfamily protein 0.55 0.29 -0.32
86 AT1G12930 ARM repeat superfamily protein 0.55 0.31 -0.3
87 AT4G37970 cinnamyl alcohol dehydrogenase 6 ATCAD6, cinnamyl alcohol
dehydrogenase 6		 0.55 0.31 -0.31
88 AT5G04380 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.55 0.31 -0.32
89 AT5G52230 methyl-CPG-binding domain protein 13 methyl-CPG-binding domain protein
13		 0.55 0.28 -0.31
90 AT2G47900 tubby like protein 3 tubby like protein 3, tubby like
protein 3		 0.54 0.32 -0.33
91 AT3G17160 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 54259
Blast hits to 25265 proteins in 1209 species: Archae - 350;
Bacteria - 10795; Metazoa - 16137; Fungi - 8620; Plants -
3305; Viruses - 957; Other Eukaryotes - 14095 (source: NCBI
BLink).		 0.54 0.32 -0.33
92 AT1G60280 NAC domain containing protein 23 NAC domain containing protein 23,
NAC domain containing protein 23		 0.54 0.33 -0.34
93 AT4G34250 3-ketoacyl-CoA synthase 16 3-ketoacyl-CoA synthase 16 0.54 0.32 -0.32
94 AT4G03090 sequence-specific DNA binding;sequence-specific DNA binding
transcription factors		 0.53 0.31 -0.33
95 AT1G57650 ATP binding 0.53 0.31 -0.3
96 AT1G55180 phospholipase D alpha 4 PLDALPHA4, phospholipase D alpha 4 0.53 0.3 -0.34
97 AT2G28330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G08035.1); Has 18 Blast hits
to 18 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.53 0.32 -0.32
98 AT4G35240 Protein of unknown function (DUF630 and DUF632) 0.53 0.35 -0.32
99 AT5G60100 pseudo-response regulator 3 pseudo-response regulator 3,
pseudo-response regulator 3		 0.53 0.3 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
100 C0123 Isoleucine D,L-Isoleucine L-Isoleucine tRNA charging,
isoleucine biosynthesis I (from threonine),
jasmonoyl-amino acid conjugates biosynthesis I,
isoleucine degradation I 		0.75 0.45 -0.43 C0123