AT1G01970 : -
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AGICode AT1G01970
Description Tetratricopeptide repeat (TPR)-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G01970 Tetratricopeptide repeat (TPR)-like superfamily protein 1 0.32 -0.33
2 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1
0.95 0.3 -0.31
3 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.95 0.32 -0.31
4 AT3G04790 Ribose 5-phosphate isomerase, type A protein EMBRYO DEFECTIVE 3119 0.94 0.31 -0.32
5 AT4G09650 ATP synthase delta-subunit gene ATP synthase delta-subunit gene,
PIGMENT DEFECTIVE 332
0.94 0.34 -0.31
6 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.93 0.29 -0.32
7 AT4G04640 ATPase, F1 complex, gamma subunit protein ATPC1 0.93 0.33 -0.29
8 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B
0.93 0.32 -0.32
9 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 25
Blast hits to 25 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).
0.93 0.3 -0.33
10 AT3G08920 Rhodanese/Cell cycle control phosphatase superfamily
protein
0.93 0.31 -0.33
11 AT2G37660 NAD(P)-binding Rossmann-fold superfamily protein 0.93 0.3 -0.31
12 AT1G55370 NDH-dependent cyclic electron flow 5 NDH-dependent cyclic electron flow
5
0.92 0.29 -0.33
13 AT4G17600 Chlorophyll A-B binding family protein LIL3:1 0.92 0.31 -0.32
14 AT2G03420 unknown protein; Has 38 Blast hits to 38 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
0.92 0.32 -0.33
15 AT4G21280 photosystem II subunit QA PHOTOSYSTEM II SUBUNIT Q,
PHOTOSYSTEM II SUBUNIT Q-1,
photosystem II subunit QA
0.92 0.3 -0.3
16 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4
0.92 0.32 -0.32
17 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.92 0.32 -0.31
18 AT5G44650 Encodes a chloroplast protein that induces tolerance to
multiple environmental stresses and reduces photooxidative
damage.
Arabidopsis thaliana chloroplast
protein-enhancing stress
tolerance, chloroplast
protein-enhancing stress
tolerance, Ycf3-interacting
protein 1
0.92 0.32 -0.31
19 AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, ISPE, PIGMENT
DEFECTIVE 277
0.92 0.3 -0.33
20 AT5G18660 NAD(P)-binding Rossmann-fold superfamily protein PALE-GREEN AND CHLOROPHYLL B
REDUCED 2
0.91 0.32 -0.32
21 AT3G28460 methyltransferases 0.91 0.34 -0.3
22 AT3G01480 cyclophilin 38 ARABIDOPSIS CYCLOPHILIN 38,
cyclophilin 38
0.91 0.33 -0.31
23 AT5G08050 Protein of unknown function (DUF1118) 0.91 0.31 -0.31
24 AT4G03280 photosynthetic electron transfer C photosynthetic electron transfer
C, PROTON GRADIENT REGULATION 1
0.91 0.29 -0.31
25 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13
0.91 0.33 -0.34
26 AT1G12900 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 glyceraldehyde 3-phosphate
dehydrogenase A subunit 2
0.91 0.29 -0.33
27 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1
0.91 0.31 -0.33
28 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B
0.91 0.31 -0.3
29 AT1G73110 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
0.91 0.31 -0.32
30 AT1G35680 Ribosomal protein L21 chloroplast ribosomal protein L21 0.91 0.31 -0.34
31 AT3G52380 chloroplast RNA-binding protein 33 chloroplast RNA-binding protein
33, PIGMENT DEFECTIVE 322
0.91 0.31 -0.32
32 AT5G57930 Arabidopsis thaliana protein of unknown function (DUF794) ACCUMULATION OF PHOTOSYSTEM ONE 2,
embryo defective 1629
0.91 0.32 -0.32
33 AT3G13120 Ribosomal protein S10p/S20e family protein 0.91 0.32 -0.32
34 AT5G53490 Tetratricopeptide repeat (TPR)-like superfamily protein 0.91 0.32 -0.3
35 AT3G20230 Ribosomal L18p/L5e family protein 0.91 0.33 -0.32
36 AT2G06520 photosystem II subunit X photosystem II subunit X 0.91 0.29 -0.32
37 AT1G14345 NAD(P)-linked oxidoreductase superfamily protein 0.91 0.3 -0.32
38 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.91 0.31 -0.32
39 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.91 0.31 -0.31
40 AT3G21055 photosystem II subunit T photosystem II subunit T 0.9 0.29 -0.29
41 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).
EMBRYO DEFECTIVE 3143 0.9 0.3 -0.33
42 AT3G55040 glutathione transferase lambda 2 glutathione transferase lambda 2 0.9 0.32 -0.33
43 AT2G40690 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein
GLY1, SUPPRESSOR OF FATTY ACID
DESATURASE DEFICIENCY 1
0.9 0.3 -0.31
44 AT2G39730 rubisco activase rubisco activase 0.9 0.32 -0.29
45 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
0.9 0.3 -0.34
46 AT1G30380 photosystem I subunit K photosystem I subunit K 0.9 0.33 -0.33
47 AT3G12930 Lojap-related protein 0.9 0.33 -0.3
48 AT3G62910 Peptide chain release factor 1 ALBINO AND PALE GREEN 0.9 0.31 -0.31
49 AT5G14100 non-intrinsic ABC protein 14 ATP-binding cassette I11,
ARABIDOPSIS THALIANANON-INTRINSIC
ABC PROTEIN 14, non-intrinsic ABC
protein 14
0.9 0.31 -0.33
50 AT1G26570 UDP-glucose dehydrogenase 1 UDP-GLUCOSE DEHYDROGENASE 1,
UDP-glucose dehydrogenase 1
0.9 0.33 -0.3
51 AT4G38970 fructose-bisphosphate aldolase 2 fructose-bisphosphate aldolase 2 0.9 0.33 -0.32
52 AT4G19100 Protein of unknown function (DUF3464) photosynthesis affected mutant 68 0.9 0.35 -0.31
53 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect
0.9 0.34 -0.33
54 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.9 0.32 -0.31
55 AT3G23700 Nucleic acid-binding proteins superfamily 0.9 0.32 -0.31
56 AT1G01080 RNA-binding (RRM/RBD/RNP motifs) family protein 0.9 0.32 -0.31
57 AT1G06680 photosystem II subunit P-1 OXYGEN EVOLVING COMPLEX SUBUNIT 23
KDA, OXYGEN-EVOLVING ENHANCER
PROTEIN 2, photosystem II subunit
P-1, PHOTOSYSTEM II SUBUNIT P
0.9 0.33 -0.31
58 AT3G04760 Pentatricopeptide repeat (PPR-like) superfamily protein 0.9 0.32 -0.32
59 AT1G32470 Single hybrid motif superfamily protein 0.9 0.3 -0.32
60 AT1G53520 Chalcone-flavanone isomerase family protein 0.9 0.32 -0.31
61 AT2G26500 cytochrome b6f complex subunit (petM), putative 0.9 0.31 -0.33
62 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.9 0.3 -0.33
63 AT2G42220 Rhodanese/Cell cycle control phosphatase superfamily
protein
0.9 0.3 -0.29
64 AT1G21600 plastid transcriptionally active 6 plastid transcriptionally active 6 0.9 0.33 -0.32
65 AT1G03680 thioredoxin M-type 1 thioredoxin M-type 1, ARABIDOPSIS
THIOREDOXIN M-TYPE 1, thioredoxin
M-type 1, THIOREDOXIN M-TYPE 1
0.9 0.31 -0.31
66 AT4G39620 Tetratricopeptide repeat (TPR)-like superfamily protein A. THALIANA PENTATRICOPEPTIDE
REPEAT 5, EMBRYO DEFECTIVE 2453
0.9 0.33 -0.31
67 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.9 0.32 -0.32
68 AT1G67740 photosystem II BY photosystem II BY, YCF32 0.9 0.32 -0.33
69 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V
0.9 0.31 -0.31
70 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).
0.89 0.31 -0.34
71 AT5G10910 mraW methylase family protein 0.89 0.33 -0.32
72 AT4G25050 acyl carrier protein 4 acyl carrier protein 4 0.89 0.31 -0.3
73 AT3G54210 Ribosomal protein L17 family protein 0.89 0.33 -0.29
74 AT5G10690 pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein
0.89 0.32 -0.33
75 AT2G30390 ferrochelatase 2 ATFC-II, FC-II, ferrochelatase 2 0.89 0.31 -0.31
76 AT1G16880 uridylyltransferase-related ACT domain repeats 11 0.89 0.34 -0.29
77 AT2G30200 catalytics;transferases;[acyl-carrier-protein]
S-malonyltransferases;binding
EMBRYO DEFECTIVE 3147 0.89 0.33 -0.32
78 AT3G51820 UbiA prenyltransferase family protein ATG4, CHLG, G4, PIGMENT DEFECTIVE
325
0.89 0.31 -0.3
79 AT4G17740 Peptidase S41 family protein 0.89 0.3 -0.34
80 AT2G33450 Ribosomal L28 family 0.89 0.3 -0.32
81 AT1G32060 phosphoribulokinase phosphoribulokinase 0.89 0.33 -0.32
82 AT5G66470 RNA binding;GTP binding 0.89 0.3 -0.32
83 AT2G04530 Metallo-hydrolase/oxidoreductase superfamily protein CPZ, TRNASE Z 2 0.89 0.34 -0.31
84 AT4G02770 photosystem I subunit D-1 photosystem I subunit D-1 0.89 0.31 -0.35
85 AT5G64040 photosystem I reaction center subunit PSI-N, chloroplast,
putative / PSI-N, putative (PSAN)
PSAN 0.89 0.33 -0.3
86 AT1G78180 Mitochondrial substrate carrier family protein 0.89 0.31 -0.31
87 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein
PsbP domain protein 5 0.89 0.31 -0.3
88 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).
PIGMENT DEFECTIVE 329 0.89 0.31 -0.31
89 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2
0.89 0.3 -0.31
90 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5
0.89 0.33 -0.32
91 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.89 0.33 -0.29
92 AT1G75690 DnaJ/Hsp40 cysteine-rich domain superfamily protein LOW QUANTUM YIELD OF PHOTOSYSTEM
II 1
0.89 0.3 -0.31
93 AT2G30695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein folding, protein transport; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins in
72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75
(source: NCBI BLink).
0.89 0.31 -0.3
94 AT4G26370 antitermination NusB domain-containing protein 0.89 0.31 -0.32
95 AT1G33040 nascent polypeptide-associated complex subunit alpha-like
protein 5
nascent polypeptide-associated
complex subunit alpha-like protein
5
0.89 0.29 -0.32
96 AT4G16410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF751 (InterPro:IPR008470); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).
0.89 0.31 -0.32
97 AT3G14930 Uroporphyrinogen decarboxylase HEME1 0.89 0.32 -0.3
98 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33
ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33
0.89 0.3 -0.31
99 AT1G32550 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 1 0.89 0.31 -0.32
100 AT1G20020 ferredoxin-NADP(+)-oxidoreductase 2 LEAF FNR 2,
ferredoxin-NADP(+)-oxidoreductase
2
0.89 0.32 -0.32
101 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).
0.89 0.29 -0.31
102 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.89 0.32 -0.34
103 AT3G49140 Pentatricopeptide repeat (PPR) superfamily protein 0.89 0.29 -0.33
104 AT4G37510 Ribonuclease III family protein 0.89 0.33 -0.32
105 AT2G43030 Ribosomal protein L3 family protein 0.89 0.29 -0.32
106 AT1G05190 Ribosomal protein L6 family embryo defective 2394 0.89 0.33 -0.32
107 AT4G15510 Photosystem II reaction center PsbP family protein 0.89 0.33 -0.32
108 AT1G55670 photosystem I subunit G photosystem I subunit G 0.89 0.32 -0.33
109 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.32 -0.33
110 AT2G42890 MEI2-like 2 MEI2-like 2, MEI2-like 2 -0.84 0.31 -0.31
111 AT5G27520 peroxisomal adenine nucleotide carrier 2 AtPNC2, peroxisomal adenine
nucleotide carrier 2
-0.84 0.32 -0.32
112 AT3G55430 O-Glycosyl hydrolases family 17 protein -0.83 0.32 -0.33
113 AT2G48010 receptor-like kinase in in flowers 3 receptor-like kinase in in flowers
3
-0.82 0.3 -0.31
114 AT3G48520 cytochrome P450, family 94, subfamily B, polypeptide 3 cytochrome P450, family 94,
subfamily B, polypeptide 3
-0.82 0.34 -0.3
115 AT5G24430 Calcium-dependent protein kinase (CDPK) family protein -0.81 0.32 -0.32
116 AT1G45145 thioredoxin H-type 5 THIOREDOXIN H-TYPE 5, thioredoxin
H-type 5, LOCUS OF INSENSITIVITY
TO VICTORIN 1, thioredoxin H-type
5
-0.81 0.32 -0.32
117 AT2G44500 O-fucosyltransferase family protein -0.81 0.31 -0.32
118 AT5G02170 Transmembrane amino acid transporter family protein -0.8 0.31 -0.31
119 AT1G21450 SCARECROW-like 1 SCARECROW-like 1 -0.79 0.32 -0.34
120 AT5G66170 sulfurtransferase 18 sulfurtransferase 18 -0.79 0.31 -0.34
121 AT5G47050 SBP (S-ribonuclease binding protein) family protein -0.79 0.31 -0.32
122 AT1G25500 Plasma-membrane choline transporter family protein -0.79 0.32 -0.33
123 AT5G53760 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 11,
MILDEW RESISTANCE LOCUS O 11
-0.78 0.32 -0.35
124 AT3G52780 Purple acid phosphatases superfamily protein ATPAP20, PAP20 -0.77 0.3 -0.32
125 AT2G23450 Protein kinase superfamily protein -0.77 0.33 -0.3
126 AT1G60610 SBP (S-ribonuclease binding protein) family protein -0.77 0.32 -0.33
127 AT2G06255 ELF4-like 3 ELF4-like 3 -0.77 0.34 -0.32
128 AT2G02370 SNARE associated Golgi protein family -0.76 0.31 -0.29
129 AT4G31550 WRKY DNA-binding protein 11 ATWRKY11, WRKY DNA-binding protein
11
-0.75 0.33 -0.29
130 AT5G22630 arogenate dehydratase 5 arogenate dehydratase 5 -0.75 0.31 -0.32
131 AT5G24290 Vacuolar iron transporter (VIT) family protein -0.75 0.31 -0.31
132 AT1G72700 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein
-0.75 0.3 -0.31
133 AT5G09980 elicitor peptide 4 precursor elicitor peptide 4 precursor -0.75 0.32 -0.31
134 AT5G28510 beta glucosidase 24 beta glucosidase 24 -0.75 0.32 -0.32
135 AT1G28190 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G12340.1); Has 166 Blast hits
to 162 proteins in 36 species: Archae - 0; Bacteria - 2;
Metazoa - 15; Fungi - 5; Plants - 124; Viruses - 0; Other
Eukaryotes - 20 (source: NCBI BLink).
-0.74 0.33 -0.33
136 AT3G54200 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family
-0.74 0.31 -0.34
137 AT3G28850 Glutaredoxin family protein -0.74 0.31 -0.31
138 AT1G50570 Calcium-dependent lipid-binding (CaLB domain) family
protein
-0.73 0.33 -0.31
139 AT2G30360 SOS3-interacting protein 4 CBL-INTERACTING PROTEIN KINASE 11,
PROTEIN KINASE SOS2-LIKE 5,
SOS3-interacting protein 4,
SNF1-RELATED PROTEIN KINASE 3.22
-0.73 0.32 -0.32
140 AT3G62770 Transducin/WD40 repeat-like superfamily protein autophagy 18a, autophagy 18a -0.73 0.3 -0.3
141 AT2G24570 WRKY DNA-binding protein 17 ATWRKY17, WRKY DNA-binding protein
17
-0.73 0.29 -0.3
142 AT5G59490 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein
-0.73 0.32 -0.29
143 AT1G31130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in
29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi -
0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).
-0.72 0.31 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
144 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic)
-0.75 0.47 -0.45 C0051