AT1G76300 : snRNP core protein SMD3
Query Information
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AGICode AT1G76300
Description snRNP core protein SMD3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G76300 snRNP core protein SMD3 snRNP core protein SMD3 1 0.33 -0.33
2 AT1G54690 gamma histone variant H2AX GAMMA H2AX, gamma histone variant
H2AX, H2AXB, histone H2A 3		 0.86 0.31 -0.3
3 AT5G50810 translocase inner membrane subunit 8 translocase inner membrane subunit
8		 0.83 0.32 -0.33
4 AT3G02820 zinc knuckle (CCHC-type) family protein 0.81 0.31 -0.31
5 AT5G05990 Mitochondrial glycoprotein family protein 0.81 0.33 -0.33
6 AT1G14980 chaperonin 10 chaperonin 10 0.8 0.31 -0.32
7 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.79 0.32 -0.31
8 AT1G03360 ribosomal RNA processing 4 ribosomal RNA processing 4,
ribosomal RNA processing 4		 0.79 0.29 -0.33
9 AT2G47640 Small nuclear ribonucleoprotein family protein 0.79 0.31 -0.31
10 AT3G27080 translocase of outer membrane 20 kDa subunit 3 translocase of outer membrane 20
kDa subunit 3		 0.79 0.33 -0.31
11 AT1G17550 homology to ABI2 homology to ABI2 -0.78 0.33 -0.33
12 AT1G03080 kinase interacting (KIP1-like) family protein -0.78 0.3 -0.3
13 AT5G22850 Eukaryotic aspartyl protease family protein -0.78 0.32 -0.32
14 AT1G09815 polymerase delta 4 polymerase delta 4 0.78 0.31 -0.32
15 AT5G57390 AINTEGUMENTA-like 5 AINTEGUMENTA-like 5, CHOTTO 1,
EMBRYOMAKER, PLETHORA 5		 -0.78 0.33 -0.32
16 AT2G29540 RNApolymerase 14 kDa subunit ATRPAC14, RNApolymerase 14 kDa
subunit, RNApolymerase 14 kDa
subunit		 0.77 0.32 -0.31
17 AT2G43640 Signal recognition particle, SRP9/SRP14 subunit 0.77 0.33 -0.33
18 AT1G49410 translocase of the outer mitochondrial membrane 6 translocase of the outer
mitochondrial membrane 6		 0.77 0.3 -0.33
19 AT3G19360 Zinc finger (CCCH-type) family protein 0.77 0.3 -0.33
20 AT1G01940 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.77 0.29 -0.32
21 AT5G24840 tRNA (guanine-N-7) methyltransferase 0.76 0.32 -0.31
22 AT1G73980 Phosphoribulokinase / Uridine kinase family -0.76 0.31 -0.32
23 AT2G35060 K+ uptake permease 11 K+ uptake permease 11 -0.76 0.31 -0.31
24 AT4G30800 Nucleic acid-binding, OB-fold-like protein 0.76 0.33 -0.33
25 AT4G16265 RNA polymerases M/15 Kd subunit NRPB9B, NRPD9B, NRPE9B 0.76 0.32 -0.34
26 AT3G15140 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.76 0.33 -0.32
27 AT4G12480 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 EARLY ARABIDOPSIS ALUMINUM INDUCED
1, pEARLI 1		 0.76 0.3 -0.3
28 AT3G14080 Small nuclear ribonucleoprotein family protein 0.76 0.32 -0.32
29 AT5G64900 precursor of peptide 1 ARABIDOPSIS THALIANA PEPTIDE 1,
PEPTIDE 1, precursor of peptide 1		 -0.75 0.31 -0.34
30 AT2G31960 glucan synthase-like 3 glucan synthase-like 3, ATGSL3,
GSL03, glucan synthase-like 3		 -0.75 0.3 -0.35
31 AT3G22430 CONTAINS InterPro DOMAIN/s: Domain of unknown function XS
(InterPro:IPR005380); BEST Arabidopsis thaliana protein
match is: XS domain-containing protein / XS zinc finger
domain-containing protein-related (TAIR:AT5G23570.1); Has
565 Blast hits to 510 proteins in 121 species: Archae - 2;
Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51;
Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink).		 -0.74 0.31 -0.3
32 AT4G18160 Ca2+ activated outward rectifying K+ channel 6 CA2+ ACTIVATED OUTWARD RECTIFYING
K+ CHANNEL 6, ATTPK3, Ca2+
activated outward rectifying K+
channel 6, TPK3		 -0.74 0.32 -0.32
33 AT2G26060 Transducin/WD40 repeat-like superfamily protein embryo defective 1345 0.74 0.32 -0.3
34 AT2G26890 DNAJ heat shock N-terminal domain-containing protein GRAVITROPISM DEFECTIVE 2,
KATAMARI2		 -0.74 0.32 -0.32
35 AT1G02700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G02140.1); Has 49 Blast hits to 49
proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa -
10; Fungi - 6; Plants - 29; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink).		 -0.73 0.29 -0.3
36 AT5G05570 transducin family protein / WD-40 repeat family protein -0.73 0.29 -0.31
37 AT1G16000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits
to 40 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.73 0.31 -0.33
38 AT3G63090 Ubiquitin carboxyl-terminal hydrolase family protein 0.73 0.32 -0.31
39 AT3G62590 alpha/beta-Hydrolases superfamily protein -0.73 0.31 -0.31
40 AT3G54290 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
N-terminal protein myristoylation; LOCATED IN: chloroplast;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE
cation-binding motif (InterPro:IPR012312); Has 59 Blast
hits to 59 proteins in 14 species: Archae - 0; Bacteria -
2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.73 0.31 -0.31
41 AT2G07340 PREFOLDIN 1 PREFOLDIN 1 0.73 0.31 -0.3
42 AT4G29790 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G19390.1); Has 538 Blast hits
to 357 proteins in 124 species: Archae - 0; Bacteria - 74;
Metazoa - 109; Fungi - 58; Plants - 105; Viruses - 2; Other
Eukaryotes - 190 (source: NCBI BLink).		 -0.72 0.31 -0.31
43 AT4G38350 Patched family protein -0.72 0.34 -0.31
44 AT5G56940 Ribosomal protein S16 family protein 0.72 0.33 -0.29
45 AT2G44820 unknown protein; Has 70 Blast hits to 70 proteins in 25
species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4;
Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).		 0.72 0.31 -0.32
46 AT2G25650 DNA-binding storekeeper protein-related transcriptional
regulator		 -0.71 0.29 -0.31
47 AT5G50170 C2 calcium/lipid-binding and GRAM domain containing protein -0.71 0.31 -0.3
48 AT5G49660 Leucine-rich repeat transmembrane protein kinase family
protein		 XYLEM INTERMIXED WITH PHLOEM 1 -0.71 0.33 -0.32
49 AT4G26180 Mitochondrial substrate carrier family protein -0.71 0.32 -0.31
50 AT5G57350 H(+)-ATPase 3 H(+)-ATPase 3, ARABIDOPSIS
THALIANA ARABIDOPSIS H(+)-ATPASE,
H(+)-ATPase 3		 -0.71 0.31 -0.3
51 AT1G58230 binding -0.7 0.32 -0.33
52 AT1G68020 UDP-Glycosyltransferase / trehalose-phosphatase family
protein		 ATTPS6, TREHALOSE -6-PHOSPHATASE
SYNTHASE S6		 -0.7 0.3 -0.3
53 AT1G62310 transcription factor jumonji (jmjC) domain-containing
protein		 -0.69 0.31 -0.3
54 AT2G28420 Lactoylglutathione lyase / glyoxalase I family protein glyoxylase I 8 -0.69 0.32 -0.32
55 AT5G16630 DNA repair protein Rad4 family ATRAD4, RAD4 -0.69 0.31 -0.34
56 AT1G31480 shoot gravitropism 2 (SGR2) SHOOT GRAVITROPISM 2 -0.68 0.32 -0.33
57 AT2G36640 embryonic cell protein 63 embryonic cell protein 63,
embryonic cell protein 63		 -0.68 0.32 -0.32
58 AT4G32850 nuclear poly(a) polymerase nuclear poly(a) polymerase,
poly(A) polymerase IV		 -0.67 0.32 -0.32
59 AT5G16550 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.67 0.31 -0.33
60 AT5G52410 CONTAINS InterPro DOMAIN/s: S-layer homology domain
(InterPro:IPR001119); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G23890.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.66 0.32 -0.32
61 AT3G08850 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1B, RAPTOR1, RAPTOR1B -0.66 0.29 -0.33
62 AT1G02080 transcription regulators -0.66 0.31 -0.3
63 AT2G03140 alpha/beta-Hydrolases superfamily protein -0.65 0.32 -0.29
64 AT1G76460 RNA-binding (RRM/RBD/RNP motifs) family protein -0.65 0.3 -0.32
65 AT1G10480 zinc finger protein 5 zinc finger protein 5 -0.65 0.32 -0.35
66 AT5G64090 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Hyccin
(InterPro:IPR018619); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G21050.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.65 0.3 -0.31
67 AT4G34040 RING/U-box superfamily protein -0.65 0.32 -0.3
68 AT3G28690 Protein kinase superfamily protein -0.65 0.33 -0.31
69 AT5G51210 oleosin3 oleosin3 -0.65 0.31 -0.3
70 AT4G00150 GRAS family transcription factor ARABIDOPSIS THALIANA HAIRY
MERISTEM 3, HAIRY MERISTEM 3, LOST
MERISTEMS 3		 -0.64 0.3 -0.31
71 AT3G57300 INO80 ortholog INO80 ORTHOLOG, INO80 ortholog -0.64 0.33 -0.33
72 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 -0.64 0.29 -0.32
73 AT5G07050 nodulin MtN21 /EamA-like transporter family protein -0.64 0.32 -0.32
74 AT1G63770 Peptidase M1 family protein -0.64 0.3 -0.3
75 AT5G16520 unknown protein; Has 25 Blast hits to 25 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.64 0.3 -0.29
76 AT1G68490 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast
hits to 125 proteins in 18 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.31 -0.29
77 AT1G51680 4-coumarate:CoA ligase 1 4-COUMARATE:COA LIGASE 1,
4-coumarate:CoA ligase 1,
ARABIDOPSIS THALIANA
4-COUMARATE:COA LIGASE 1		 -0.64 0.32 -0.32
78 AT4G18990 xyloglucan endotransglucosylase/hydrolase 29 xyloglucan
endotransglucosylase/hydrolase 29		 -0.64 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
79 C0258 Tryptophan amide (NH3+) D,L-Tryptophan amide (NH3+) - - -0.75 0.42 -0.45
80 C0260 Tyrosine L-(-)-Tyrosine L-Tyrosine tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis 		-0.7 0.31 -0.3 C0260
81 C0257 Tryptophan L-Tryptophan L-Tryptophan glucosinolate biosynthesis from tryptophan,
IAA biosynthesis I,
tryptophan biosynthesis,
camalexin biosynthesis,
tRNA charging 		-0.69 0.32 -0.32 C0257
82 C0052 Adenosine - Adenosine adenine and adenosine salvage VI,
S-adenosyl-L-methionine cycle II,
cytokinins degradation,
methionine degradation I (to homocysteine),
adenine and adenosine salvage II 		-0.64 0.32 -0.31 C0052