AT1G30460 : ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30.....
Query Information
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AGICode AT1G30460
Description cleavage and polyadenylation specificity factor 30
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G30460 cleavage and polyadenylation specificity factor 30 ARABIDOPSIS THALIANA CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR
30, cleavage and polyadenylation
specificity factor 30		 1 0.31 -0.32
2 AT3G32917 transposable element gene -0.67 0.32 -0.31
3 AT2G40770 zinc ion binding;DNA binding;helicases;ATP binding;nucleic
acid binding		 0.59 0.31 -0.31
4 AT1G31190 myo-inositol monophosphatase like 1 myo-inositol monophosphatase like
1		 -0.58 0.31 -0.3
5 AT3G03580 Tetratricopeptide repeat (TPR)-like superfamily protein 0.58 0.3 -0.32
6 AT3G61180 RING/U-box superfamily protein -0.57 0.31 -0.32
7 AT3G16550 DEGP protease 12 DEGP protease 12 0.57 0.31 -0.31
8 AT5G04290 kow domain-containing transcription factor 1 kow domain-containing
transcription factor 1, SPT5-LIKE		 0.56 0.3 -0.34
9 AT1G54460 TPX2 (targeting protein for Xklp2) protein family -0.56 0.33 -0.31
10 AT1G31812 acyl-CoA-binding protein 6 ACYL-COA-BINDING PROTEIN,
acyl-CoA-binding protein 6		 -0.56 0.31 -0.32
11 AT4G39370 ubiquitin-specific protease 27 ubiquitin-specific protease 27 -0.56 0.32 -0.31
12 AT5G49310 importin alpha isoform 5 importin alpha isoform 5 0.56 0.31 -0.32
13 AT2G23230 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.56 0.3 -0.34
14 AT1G69660 TRAF-like family protein 0.56 0.34 -0.34
15 AT3G56830 Protein of unknown function (DUF565) -0.55 0.34 -0.34
16 AT3G16175 Thioesterase superfamily protein -0.55 0.3 -0.3
17 AT1G48030 mitochondrial lipoamide dehydrogenase 1 mitochondrial lipoamide
dehydrogenase 1		 -0.54 0.32 -0.32
18 AT3G32050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G14780.1); Has 22 Blast hits
to 22 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.54 0.29 -0.31
19 AT2G11110 transposable element gene -0.53 0.32 -0.32
20 AT5G58520 Protein kinase superfamily protein 0.53 0.33 -0.32
21 AT3G09180 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27
(InterPro:IPR021627); Has 112 Blast hits to 112 proteins in
38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi -
0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).		 -0.53 0.33 -0.34
22 AT4G15230 pleiotropic drug resistance 2 ATP-binding cassette G30, ATPDR2,
pleiotropic drug resistance 2		 0.53 0.32 -0.3
23 AT1G78510 solanesyl diphosphate synthase 1 solanesyl diphosphate synthase 1 -0.53 0.31 -0.32
24 AT3G16750 unknown protein; Has 4708 Blast hits to 1416 proteins in
195 species: Archae - 36; Bacteria - 1240; Metazoa - 1232;
Fungi - 406; Plants - 191; Viruses - 23; Other Eukaryotes -
1580 (source: NCBI BLink).		 -0.53 0.31 -0.31
25 AT5G65580 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: flower; EXPRESSED
DURING: petal differentiation and expansion stage; Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.53 0.3 -0.27
26 AT4G25590 actin depolymerizing factor 7 actin depolymerizing factor 7 -0.52 0.33 -0.32
27 AT1G43840 transposable element gene 0.52 0.33 -0.31
28 AT2G02140 low-molecular-weight cysteine-rich 72 low-molecular-weight cysteine-rich
72, PDF2.6		 0.52 0.31 -0.32
29 AT5G10270 cyclin-dependent kinase C;1 cyclin-dependent kinase C;1 -0.51 0.29 -0.33
30 AT1G02475 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.51 0.28 -0.32
31 AT3G07610 Transcription factor jumonji (jmjC) domain-containing
protein		 increase in bonsai methylation 1 0.51 0.33 -0.32
32 AT1G64960 ARM repeat superfamily protein hypersensitive to excess boron 1 0.51 0.3 -0.31
33 AT4G16030 Ribosomal protein L19e family protein -0.5 0.3 -0.31
34 AT4G35650 isocitrate dehydrogenase III isocitrate dehydrogenase III -0.5 0.33 -0.3
35 AT2G07280 unknown protein; Has 19 Blast hits to 19 proteins in 3
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.5 0.32 -0.3
36 AT2G26510 Xanthine/uracil permease family protein pigment defective embryo 135 0.5 0.3 -0.33
37 AT1G32260 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G35480.1); Has 48 Blast
hits to 48 proteins in 14 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.5 0.32 -0.32
38 AT5G56330 alpha carbonic anhydrase 8 alpha carbonic anhydrase 8, A.
THALIANA ALPHA CARBONIC ANHYDRASE
8		 -0.5 0.31 -0.31
39 AT4G33460 ABC transporter family protein ATP-binding cassette I10, ATNAP13,
embryo defective 2751		 -0.49 0.34 -0.33
40 AT5G07640 RING/U-box superfamily protein 0.49 0.29 -0.33
41 AT2G18500 ovate family protein 7 ARABIDOPSIS THALIANA OVATE FAMILY
PROTEIN 7, ovate family protein 7		 0.49 0.28 -0.31
42 AT3G47250 Plant protein of unknown function (DUF247) -0.49 0.32 -0.33
43 AT5G66060 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.49 0.31 -0.31
44 AT3G58290 TRAF-like superfamily protein -0.48 0.32 -0.31
45 AT4G20910 double-stranded RNA binding protein-related / DsRBD
protein-related		 CORYMBOSA 2, HUA ENHANCER 1 0.48 0.31 -0.31
46 AT1G11770 FAD-binding Berberine family protein 0.48 0.31 -0.31
47 AT5G17730 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.48 0.32 -0.32
48 AT3G07890 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.47 0.33 -0.32
49 AT5G09940 Protein of unknown function (DUF1635) -0.47 0.29 -0.32
50 AT5G55680 glycine-rich protein 0.47 0.32 -0.31
51 AT5G52480 RNI-like superfamily protein 0.47 0.29 -0.32
52 AT5G47570 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.46 0.32 -0.32
53 AT4G31680 Transcriptional factor B3 family protein -0.46 0.31 -0.34
54 AT1G64780 ammonium transporter 1;2 ammonium transporter 1;2, ammonium
transporter 1;2		 0.46 0.33 -0.29
55 AT5G41660 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT3G44430.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.46 0.33 -0.31
56 AT5G65250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.46 0.32 -0.31
57 AT5G41820 RAB geranylgeranyl transferase alpha subunit 2 RAB geranylgeranyl transferase
alpha subunit 2, RAB
geranylgeranyl transferase alpha
subunit 2		 -0.46 0.33 -0.32
58 AT3G50860 Clathrin adaptor complex small chain family protein -0.46 0.34 -0.34
59 AT4G09690 Cysteine/Histidine-rich C1 domain family protein 0.46 0.33 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
60 C0241 Stigmasterol 3-O-β-D-glucoside - Stigmasterol 3-O-β-D-glucoside - 0.74 0.51 -0.48 C0241
61 C0238 Sitosterol 3-O-β-D-glucoside - 3-O-β-D-Glucosyl-β-sitosterol sphingolipid biosynthesis 0.71 0.36 -0.32 C0238
62 C0208 Phosphatidylinositol-34:2 - Phosphatidylinositol-34:2 3-phosphoinositide biosynthesis,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
sphingolipid biosynthesis,
linoleate biosynthesis I,
cutin biosynthesis,
glycerophosphodiester degradation,
phosphate acquisition,
glutathione redox reactions I 		0.7 0.46 -0.47 C0208
63 C0081 Digalactosyldiacylglycerol-36:2 - Digalactosyldiacylglycerol-36:2 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.7 0.52 -0.5 C0081
64 C0085 Digalactosyldiacylglycerol-36:6 - Digalactosyldiacylglycerol-36:6 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.69 0.51 -0.51 C0085
65 C0084 Digalactosyldiacylglycerol-36:5 - Digalactosyldiacylglycerol-36:5 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.69 0.51 -0.5 C0084
66 C0064 Campesterol 3-O-β-D-glucoside - - - 0.68 0.33 -0.32
67 C0083 Digalactosyldiacylglycerol-36:4 - Digalactosyldiacylglycerol-36:4 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.66 0.46 -0.49 C0083
68 C0082 Digalactosyldiacylglycerol-36:3 - Digalactosyldiacylglycerol-36:3 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.64 0.46 -0.5 C0082
69 C0246 Sulfoquinovosyldiacylglycerol-34:2 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis 0.57 0.33 -0.32 C0246
70 C0077 Digalactosyldiacylglycerol-34:2 - Digalactosyldiacylglycerol-34:2 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.56 0.35 -0.32
71 C0201 Phosphatidylglycerol-32:1 - Phosphatidylglycerol-32:1 cardiolipin biosynthesis II,
linoleate biosynthesis I,
glycerophosphodiester degradation,
glutathione redox reactions I 		0.56 0.33 -0.34
72 C0205 Phosphatidylglycerol-34:3 - Phosphatidylglycerol-34:3 cardiolipin biosynthesis II,
linoleate biosynthesis I,
glycerophosphodiester degradation,
glutathione redox reactions I 		0.56 0.32 -0.36
73 C0157 Monogalactosyldiacylgycerol-36:6 - a Monogalactosyldiacylgycerol glycolipid biosynthesis,
triacylglycerol degradation,
linoleate biosynthesis I,
glutathione redox reactions I 		0.53 0.33 -0.33
74 C0156 Monogalactosyldiacylgycerol-36:5 - a Monogalactosyldiacylgycerol glycolipid biosynthesis,
triacylglycerol degradation,
linoleate biosynthesis I,
glutathione redox reactions I 		0.52 0.32 -0.33
75 C0250 Sulfoquinovosyldiacylglycerol-36:5 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis 0.49 0.32 -0.35 C0250