AT1G80800 : -
Query Information
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AGICode AT1G80800
Description pseudogene, 40S ribosomal protein S12 (RPS12B), similar to ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum vulgare); blastp match of 65% identity and 4.7e-12 P-value to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S ribosomal protein S12 {Oryza sativa (japonica cultivar-group)}
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G80800 pseudogene, 40S ribosomal protein S12 (RPS12B), similar to
ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum
vulgare); blastp match of 65% identity and 4.7e-12 P-value
to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S
ribosomal protein S12 {Oryza sativa (japonica
cultivar-group)}		 1 0.32 -0.31
2 AT1G49240 actin 8 actin 8, FRIZZY AND KINKED SHOOTS -0.78 0.3 -0.3
3 AT5G25560 CHY-type/CTCHY-type/RING-type Zinc finger protein 0.74 0.28 -0.35
4 AT1G52060 Mannose-binding lectin superfamily protein -0.74 0.32 -0.33
5 AT1G02205 Fatty acid hydroxylase superfamily ECERIFERUM 1 0.73 0.32 -0.33
6 AT2G30050 transducin family protein / WD-40 repeat family protein -0.72 0.3 -0.3
7 AT1G19520 pentatricopeptide (PPR) repeat-containing protein NUCLEAR FUSION DEFECTIVE 5 -0.71 0.34 -0.33
8 AT3G12030 Protein of unknown function DUF106, transmembrane -0.71 0.32 -0.31
9 AT4G22330 Alkaline phytoceramidase (aPHC) ATCES1 -0.71 0.29 -0.33
10 AT4G24450 phosphoglucan, water dikinase ATGWD2, GWD3, phosphoglucan, water
dikinase		 0.7 0.31 -0.3
11 AT5G57020 myristoyl-CoA:protein N-myristoyltransferase ARABIDOPSIS THALIANA
MYRISTOYL-COA:PROTEIN
N-MYRISTOYLTRANSFERASE,
myristoyl-CoA:protein
N-myristoyltransferase		 -0.7 0.34 -0.33
12 AT5G37360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.7 0.31 -0.29
13 AT3G19130 RNA-binding protein 47B RNA-binding protein 47B,
RNA-binding protein 47B		 -0.7 0.34 -0.32
14 AT1G02205 Fatty acid hydroxylase superfamily ECERIFERUM 1 0.7 0.32 -0.33
15 AT5G49460 ATP citrate lyase subunit B 2 ATP citrate lyase subunit B 2 -0.7 0.34 -0.3
16 AT5G42420 Nucleotide-sugar transporter family protein -0.69 0.32 -0.3
17 AT3G04080 apyrase 1 apyrase 1, apyrase 1 -0.69 0.31 -0.31
18 AT5G11630 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G17310.1); Has 90 Blast
hits to 90 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.69 0.33 -0.31
19 AT3G05530 regulatory particle triple-A ATPase 5A ATS6A.2, regulatory particle
triple-A ATPase 5A		 -0.69 0.32 -0.34
20 AT1G52070 Mannose-binding lectin superfamily protein -0.68 0.31 -0.33
21 AT2G25590 Plant Tudor-like protein 0.68 0.32 -0.3
22 AT1G27390 translocase outer membrane 20-2 translocase outer membrane 20-2 -0.68 0.31 -0.29
23 AT5G25220 KNOTTED1-like homeobox gene 3 KNOTTED1-like homeobox gene 3 0.68 0.29 -0.32
24 AT3G51800 metallopeptidase M24 family protein A. THALIANA ERBB-3 BINDING PROTEIN
1, ATG2, ERBB-3 BINDING PROTEIN 1		 -0.68 0.31 -0.33
25 AT5G54370 Late embryogenesis abundant (LEA) protein-related -0.68 0.3 -0.31
26 AT5G04970 Plant invertase/pectin methylesterase inhibitor superfamily -0.68 0.33 -0.32
27 AT4G26650 RNA-binding (RRM/RBD/RNP motifs) family protein -0.68 0.33 -0.32
28 AT4G31320 SAUR-like auxin-responsive protein family -0.68 0.32 -0.31
29 AT3G17465 ribosomal protein L3 plastid ribosomal protein L3 plastid -0.68 0.32 -0.33
30 AT3G02200 Proteasome component (PCI) domain protein -0.68 0.3 -0.3
31 AT3G54770 RNA-binding (RRM/RBD/RNP motifs) family protein -0.67 0.31 -0.31
32 AT3G18940 clast3-related -0.67 0.32 -0.31
33 AT4G32400 Mitochondrial substrate carrier family protein ARABIDOPSIS THALIANA BRITTLE 1,
EMBRYO DEFECTIVE 104, EMBRYO
DEFECTIVE 42, SODIUM
HYPERSENSITIVE 1		 -0.67 0.34 -0.32
34 AT1G18580 galacturonosyltransferase 11 galacturonosyltransferase 11 -0.67 0.33 -0.3
35 AT2G39795 Mitochondrial glycoprotein family protein -0.67 0.32 -0.32
36 AT3G13160 Tetratricopeptide repeat (TPR)-like superfamily protein -0.67 0.29 -0.3
37 AT2G32270 zinc transporter 3 precursor zinc transporter 3 precursor -0.67 0.33 -0.31
38 AT4G35200 Arabidopsis protein of unknown function (DUF241) -0.67 0.31 -0.32
39 AT5G16930 AAA-type ATPase family protein -0.67 0.32 -0.32
40 AT1G12000 Phosphofructokinase family protein -0.67 0.33 -0.33
41 AT4G19030 NOD26-like major intrinsic protein 1 AT-NLM1, NOD26-LIKE MAJOR
INTRINSIC PROTEIN 1, NOD26-LIKE
INTRINSIC PROTEIN 1;1, NOD26-like
major intrinsic protein 1		 -0.66 0.31 -0.3
42 AT1G73250 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 ACTIVATING TRANSCRIPTION FACTOR 5,
GDP-4-keto-6-deoxymannose-3,5-epim
erase-4-reductase 1		 -0.66 0.31 -0.29
43 AT2G41870 Remorin family protein 0.66 0.32 -0.32
44 AT5G60730 Anion-transporting ATPase -0.66 0.29 -0.29
45 AT5G41960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 0.66 0.3 -0.31
46 AT1G28510 Optic atrophy 3 protein (OPA3) -0.66 0.3 -0.3
47 AT2G20585 nuclear fusion defective 6 NUCLEAR FUSION DEFECTIVE 6 -0.66 0.31 -0.32
48 AT1G54890 Late embryogenesis abundant (LEA) protein-related -0.66 0.34 -0.31
49 AT1G72730 DEA(D/H)-box RNA helicase family protein -0.66 0.31 -0.32
50 AT4G04750 Major facilitator superfamily protein 0.65 0.31 -0.35
51 AT3G06510 Glycosyl hydrolase superfamily protein SENSITIVE TO FREEZING 2, SENSITIVE
TO FREEZING 2		 0.65 0.31 -0.31
52 AT4G31180 Class II aminoacyl-tRNA and biotin synthetases superfamily
protein		 -0.65 0.31 -0.33
53 AT4G27000 RNA-binding (RRM/RBD/RNP motifs) family protein ATRBP45C -0.65 0.29 -0.31
54 AT3G61240 DEA(D/H)-box RNA helicase family protein -0.65 0.3 -0.33
55 AT5G26780 serine hydroxymethyltransferase 2 serine hydroxymethyltransferase 2 -0.65 0.29 -0.33
56 AT5G40200 DegP protease 9 DegP protease 9 -0.65 0.31 -0.31
57 AT5G11760 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1764, eukaryotic (InterPro:IPR013885);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 -0.65 0.33 -0.32
58 AT1G72190 D-isomer specific 2-hydroxyacid dehydrogenase family
protein		 0.65 0.3 -0.31
59 AT3G59920 RAB GDP dissociation inhibitor 2 RAB GDP dissociation inhibitor 2,
RAB GDP dissociation inhibitor 2		 -0.65 0.32 -0.3
60 AT1G47640 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF2053, membrane
(InterPro:IPR019164); Has 204 Blast hits to 204 proteins in
84 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi
- 0; Plants - 50; Viruses - 0; Other Eukaryotes - 27
(source: NCBI BLink).		 -0.65 0.31 -0.31
61 AT5G57500 Galactosyltransferase family protein -0.65 0.3 -0.34
62 AT4G27590 Heavy metal transport/detoxification superfamily protein -0.65 0.31 -0.32
63 AT5G16180 ortholog of maize chloroplast splicing factor CRS1 ARABIDOPSIS ORTHOLOG OF MAIZE
CHLOROPLAST SPLICING FACTOR CRS1,
ortholog of maize chloroplast
splicing factor CRS1		 0.64 0.3 -0.29
64 AT3G45900 Ribonuclease P protein subunit P38-related 0.64 0.35 -0.32
65 AT3G28200 Peroxidase superfamily protein -0.64 0.32 -0.31
66 AT4G08460 Protein of unknown function (DUF1644) -0.64 0.31 -0.33
67 AT5G09900 26S proteasome regulatory subunit, putative (RPN5) EMBRYO DEFECTIVE 2107, MARIPOSA,
REGULATORY PARTICLE NON-ATPASE
SUBUNIT 5A		 -0.64 0.32 -0.3
68 AT3G46060 RAB GTPase homolog 8A ARA-3, ARA3, RAB GTPase homolog
8A, ATRABE1C, RAB GTPase homolog
8A, RABE1c		 -0.64 0.3 -0.33
69 AT3G52950 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing
protein		 -0.64 0.32 -0.3
70 AT5G37670 HSP20-like chaperones superfamily protein 0.64 0.32 -0.3
71 AT5G18850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.64 0.32 -0.3
72 AT1G77080 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 27, FLOWERING LOCUS
M, MADS AFFECTING FLOWERING 1		 0.64 0.33 -0.31
73 AT1G70990 proline-rich family protein -0.64 0.31 -0.31
74 AT5G39580 Peroxidase superfamily protein -0.63 0.33 -0.27
75 AT1G19360 Nucleotide-diphospho-sugar transferase family protein reduced residual arabinose 3 -0.63 0.32 -0.33
76 AT2G30790 photosystem II subunit P-2 photosystem II subunit P-2 0.63 0.32 -0.32
77 AT5G10930 CBL-interacting protein kinase 5 CBL-interacting protein kinase 5,
SNF1-RELATED PROTEIN KINASE 3.24		 0.63 0.31 -0.3
78 AT1G28160 Integrase-type DNA-binding superfamily protein -0.63 0.31 -0.31
79 AT1G19370 unknown protein; LOCATED IN: endoplasmic reticulum;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 -0.63 0.32 -0.33
80 AT1G04950 TATA BOX ASSOCIATED FACTOR II 59 ATTAF6, EMBRYO DEFECTIVE 2781,
TBP-associated factor 6, TATA BOX
ASSOCIATED FACTOR II 59		 0.63 0.35 -0.32
81 AT3G11830 TCP-1/cpn60 chaperonin family protein -0.63 0.32 -0.29
82 AT5G36150 putative pentacyclic triterpene synthase 3 putative pentacyclic triterpene
synthase 3, putative pentacyclic
triterpene synthase 3		 -0.62 0.33 -0.3
83 AT1G63240 unknown protein; Has 460 Blast hits to 413 proteins in 106
species: Archae - 5; Bacteria - 12; Metazoa - 152; Fungi -
46; Plants - 43; Viruses - 2; Other Eukaryotes - 200
(source: NCBI BLink).		 0.62 0.31 -0.35
84 AT1G14220 Ribonuclease T2 family protein -0.62 0.31 -0.31
85 AT3G43220 Phosphoinositide phosphatase family protein 0.62 0.32 -0.31
86 AT5G45510 Leucine-rich repeat (LRR) family protein -0.62 0.32 -0.32
87 AT3G45420 Concanavalin A-like lectin protein kinase family protein 0.62 0.31 -0.31
88 AT5G39320 UDP-glucose 6-dehydrogenase family protein -0.62 0.32 -0.32
89 AT2G21160 Translocon-associated protein (TRAP), alpha subunit -0.62 0.34 -0.31
90 AT2G23310 Rer1 family protein ATRER1C1 -0.62 0.3 -0.32
91 AT5G19680 Leucine-rich repeat (LRR) family protein -0.62 0.32 -0.29
92 AT1G03420 transposable element gene sadhu non-coding retrotransposon
4-2		 -0.62 0.33 -0.34
93 AT3G50010 Cysteine/Histidine-rich C1 domain family protein -0.62 0.3 -0.32
94 AT3G22490 Seed maturation protein 0.62 0.31 -0.33
95 AT4G16143 importin alpha isoform 2 importin alpha isoform 2 -0.62 0.33 -0.33
96 AT2G16910 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 ABORTED MICROSPORES 0.61 0.31 -0.35
97 AT1G61500 S-locus lectin protein kinase family protein 0.61 0.31 -0.32
98 AT1G73750 Uncharacterised conserved protein UCP031088, alpha/beta
hydrolase		 0.61 0.31 -0.3
99 AT3G58450 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.61 0.33 -0.32
100 AT5G12410 THUMP domain-containing protein -0.61 0.33 -0.3
101 AT2G39580 CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain
(InterPro:IPR019607); Has 249 Blast hits to 219 proteins in
85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi
- 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18
(source: NCBI BLink).		 0.61 0.31 -0.29
102 AT2G40310 Pectin lyase-like superfamily protein 0.61 0.34 -0.31
103 AT1G09760 U2 small nuclear ribonucleoprotein A U2 small nuclear ribonucleoprotein
A		 -0.61 0.28 -0.33
104 AT2G32600 hydroxyproline-rich glycoprotein family protein -0.61 0.3 -0.3
105 AT1G68200 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.61 0.32 -0.32
106 AT5G14250 Proteasome component (PCI) domain protein CONSTITUTIVE PHOTOMORPHOGENIC 13,
COP9 SIGNALOSOME SUBUNIT 3, FUSCA
11		 -0.61 0.32 -0.32
107 AT5G24620 Pathogenesis-related thaumatin superfamily protein 0.6 0.31 -0.32
108 AT1G17870 ethylene-dependent gravitropism-deficient and
yellow-green-like 3		 ETHYLENE-DEPENDENT
GRAVITROPISM-DEFICIENT AND
YELLOW-GREEN-LIKE 3,
ETHYLENE-DEPENDENT
GRAVITROPISM-DEFICIENT AND
YELLOW-GREEN-LIKE 3		 0.6 0.32 -0.31
109 AT4G36280 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 0.6 0.32 -0.3
110 AT3G19920 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G64230.1); Has 217 Blast hits
to 217 proteins in 16 species: Archae - 0; Bacteria - 2;
Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.59 0.34 -0.29
111 AT1G74300 alpha/beta-Hydrolases superfamily protein 0.59 0.32 -0.33
112 AT5G46830 NACL-inducible gene 1 NACL-INDUCIBLE GENE 1,
NACL-inducible gene 1		 0.59 0.3 -0.3
113 AT4G02430 RNA-binding (RRM/RBD/RNP motifs) family protein Serine/Arginine-Rich Protein
Splicing Factor 34b,
Serine/Arginine-Rich Protein
Splicing Factor 34b		 0.59 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
114 C0131 Kaempferol-3-O-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside Kaempferol-3-glucoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.71 0.45 -0.47 C0131
115 C0184 MST_3110.4 - - - 0.68 0.47 -0.44
116 C0232 Shikimic acid - Shikimate phenylpropanoid biosynthesis,
chorismate biosynthesis,
simple coumarins biosynthesis 		0.62 0.31 -0.31 C0232