AT1G65060 : 4-coumarate:CoA ligase 3
Query Information
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AGICode AT1G65060
Description 4-coumarate:CoA ligase 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G65060 4-coumarate:CoA ligase 3 4-coumarate:CoA ligase 3 1 0.31 -0.31
2 AT5G60780 nitrate transporter 2.3 ARABIDOPSIS THALIANA NITRATE
TRANSPORTER 2.3, nitrate
transporter 2.3		 0.78 0.33 -0.31
3 AT2G35860 FASCICLIN-like arabinogalactan protein 16 precursor FASCICLIN-like arabinogalactan
protein 16 precursor		 0.77 0.32 -0.31
4 AT5G17790 zinc finger (Ran-binding) family protein VARIEGATED 3 0.75 0.32 -0.33
5 AT3G21190 O-fucosyltransferase family protein 0.75 0.32 -0.31
6 AT3G45300 isovaleryl-CoA-dehydrogenase ATIVD,
isovaleryl-CoA-dehydrogenase,
ISOVALERYL-COA-DEHYDROGENASE		 -0.74 0.3 -0.3
7 AT5G62210 Embryo-specific protein 3, (ATS3) 0.73 0.33 -0.32
8 AT4G35770 Rhodanese/Cell cycle control phosphatase superfamily
protein		 ARABIDOPSIS THALIANA SENESCENCE 1,
DARK INDUCIBLE 1, SENESCENCE 1,
SENESCENCE ASSOCIATED GENE 1		 -0.73 0.3 -0.32
9 AT5G09870 cellulose synthase 5 cellulose synthase 5 0.73 0.32 -0.32
10 AT2G22660 Protein of unknown function (duplicated DUF1399) -0.73 0.31 -0.32
11 AT2G29400 type one protein phosphatase 1 PROTEIN PHOSPHATASE 1, type one
protein phosphatase 1		 -0.72 0.31 -0.31
12 AT4G23200 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 cysteine-rich RLK (RECEPTOR-like
protein kinase) 12		 0.71 0.31 -0.32
13 AT4G23570 phosphatase-related SGT1A 0.71 0.31 -0.34
14 AT5G53990 UDP-Glycosyltransferase superfamily protein -0.71 0.3 -0.35
15 AT5G17870 plastid-specific 50S ribosomal protein 6 plastid-specific 50S ribosomal
protein 6		 0.7 0.33 -0.31
16 AT5G67380 casein kinase alpha 1 ATCKA1, casein kinase alpha 1 -0.7 0.29 -0.33
17 AT3G60300 RWD domain-containing protein -0.7 0.35 -0.33
18 AT3G01770 bromodomain and extraterminal domain protein 10 bromodomain and extraterminal
domain protein 10, bromodomain and
extraterminal domain protein 10		 -0.69 0.34 -0.32
19 AT3G44450 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G52740.1); Has 63 Blast hits
to 63 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.69 0.31 -0.31
20 AT5G40830 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.68 0.32 -0.32
21 AT1G19940 glycosyl hydrolase 9B5 glycosyl hydrolase 9B5, glycosyl
hydrolase 9B5		 0.68 0.31 -0.32
22 AT2G28910 CAX interacting protein 4 CAX interacting protein 4 -0.68 0.33 -0.31
23 AT3G16857 response regulator 1 response regulator 1, response
regulator 1		 -0.68 0.31 -0.31
24 AT5G05170 Cellulose synthase family protein ATCESA3, ATH-B, CELLULOSE SYNTHASE
3, CONSTITUTIVE EXPRESSION OF VSP
1, ISOXABEN RESISTANT 1		 0.68 0.32 -0.3
25 AT1G26665 Mediator complex, subunit Med10 -0.67 0.3 -0.32
26 AT5G24850 cryptochrome 3 cryptochrome 3 0.67 0.33 -0.32
27 AT3G53260 phenylalanine ammonia-lyase 2 ATPAL2, phenylalanine
ammonia-lyase 2		 0.67 0.33 -0.32
28 AT1G06000 UDP-Glycosyltransferase superfamily protein 0.67 0.32 -0.31
29 AT5G28500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in
49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi -
0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.67 0.29 -0.3
30 AT1G32700 PLATZ transcription factor family protein -0.66 0.33 -0.32
31 AT1G53920 GDSL-motif lipase 5 GDSL-motif lipase 5 0.66 0.31 -0.31
32 AT1G51805 Leucine-rich repeat protein kinase family protein 0.65 0.3 -0.33
33 AT1G28580 GDSL-like Lipase/Acylhydrolase superfamily protein -0.65 0.33 -0.32
34 AT5G57655 xylose isomerase family protein -0.65 0.32 -0.31
35 AT4G14340 casein kinase I casein kinase I, CASEIN KINASE
I-LIKE 11		 -0.65 0.31 -0.33
36 AT5G19860 Protein of unknown function, DUF538 -0.65 0.34 -0.31
37 AT5G66180 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.64 0.29 -0.32
38 AT5G36910 thionin 2.2 thionin 2.2 0.64 0.33 -0.32
39 AT1G53180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 13 plant
structures; EXPRESSED DURING: 6 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G15115.1); Has 58 Blast hits to 56 proteins in 22
species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4;
Plants - 29; Viruses - 0; Other Eukaryotes - 19 (source:
NCBI BLink).		 -0.64 0.3 -0.33
40 AT3G12120 fatty acid desaturase 2 fatty acid desaturase 2 -0.64 0.3 -0.33
41 AT1G78570 rhamnose biosynthesis 1 ARABIDOPSIS THALIANA RHAMNOSE
BIOSYNTHESIS 1, rhamnose
biosynthesis 1, REPRESSOR OF LRX1
1		 0.64 0.3 -0.31
42 AT3G01520 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.63 0.31 -0.33
43 AT2G33570 Domain of unknown function (DUF23) 0.63 0.32 -0.31
44 AT5G12330 Lateral root primordium (LRP) protein-related LATERAL ROOT PRIMORDIUM 1 -0.63 0.35 -0.32
45 AT5G64740 cellulose synthase 6 cellulose synthase 6, E112,
ISOXABEN RESISTANT 2, PROCUSTE 1		 0.62 0.3 -0.32
46 AT4G11360 RING-H2 finger A1B RING-H2 finger A1B -0.62 0.31 -0.32
47 AT5G29000 Homeodomain-like superfamily protein PHR1-like 1 -0.61 0.3 -0.29
48 AT2G05640 transposable element gene 0.61 0.32 -0.32
49 AT3G60640 Ubiquitin-like superfamily protein AUTOPHAGY 8G -0.61 0.3 -0.32
50 AT5G63190 MA3 domain-containing protein -0.61 0.32 -0.3
51 AT1G79070 SNARE-associated protein-related 0.61 0.31 -0.3
52 AT5G45360 F-box family protein -0.6 0.31 -0.31
53 AT5G05270 Chalcone-flavanone isomerase family protein 0.6 0.3 -0.33
54 AT5G62220 glycosyltransferase 18 glycosyltransferase 18,
glycosyltransferase 18		 0.6 0.33 -0.32
55 AT5G39710 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 2745 0.6 0.33 -0.32
56 AT1G34630 BEST Arabidopsis thaliana protein match is: Mitochondrial
import inner membrane translocase subunit Tim17/Tim22/Tim23
family protein (TAIR:AT5G51150.1); Has 323 Blast hits to
315 proteins in 124 species: Archae - 0; Bacteria - 0;
Metazoa - 95; Fungi - 110; Plants - 73; Viruses - 0; Other
Eukaryotes - 45 (source: NCBI BLink).		 -0.59 0.31 -0.29
57 AT2G22420 Peroxidase superfamily protein -0.59 0.32 -0.3
58 AT2G23030 SNF1-related protein kinase 2.9 SUCROSE NONFERMENTING 1-RELATED
PROTEIN KINASE 2-9, SNF1-related
protein kinase 2.9		 -0.59 0.31 -0.32
59 AT1G69790 Protein kinase superfamily protein -0.58 0.33 -0.32
60 AT2G29390 sterol 4-alpha-methyl-oxidase 2-2 STEROL 4-ALPHA-METHYL-OXIDASE 2,
Arabidopsis thaliana sterol
4-alpha-methyl-oxidase 2-2, sterol
4-alpha-methyl-oxidase 2-2		 -0.58 0.33 -0.3
61 AT5G42820 Zinc finger C-x8-C-x5-C-x3-H type family protein ATU2AF35B, U2AF35B -0.58 0.33 -0.32
62 AT1G76560 CP12 domain-containing protein 3 CP12 domain-containing protein 3 -0.58 0.31 -0.32
63 AT4G15260 UDP-Glycosyltransferase superfamily protein -0.58 0.3 -0.29
64 AT4G16670 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 -0.57 0.32 -0.33
65 AT1G21680 DPP6 N-terminal domain-like protein -0.57 0.3 -0.33
66 AT5G27320 alpha/beta-Hydrolases superfamily protein ATGID1C, GA INSENSITIVE DWARF1C -0.57 0.31 -0.34
67 AT4G11650 osmotin 34 osmotin 34, osmotin 34 -0.57 0.31 -0.31
68 AT4G32910 CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein,
Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.57 0.32 -0.31
69 AT2G37340 arginine/serine-rich zinc knuckle-containing protein 33 arginine/serine-rich zinc
knuckle-containing protein 33,
ARGININE/SERINE-RICH ZINC
KNUCKLE-CONTAINING PROTEIN 33,
arginine/serine-rich zinc
knuckle-containing protein 33,
arginine/serine-rich zinc
knuckle-containing protein 33		 -0.57 0.29 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
70 C0129 Kaempferol-3-(2''-O-α-rhamnosyl)-O-β-glucosyl-7-O-α-rhamnoside Kaempferol-3-(2''-O-α-L-rhamnosyl)-O-β-D-glucosyl-7-O-α-L-rhamnoside - kaempferol glucoside biosynthesis (Arabidopsis) 0.78 0.47 -0.47
71 C0255 Trehalose α,α-D-Trehalose Trehalose trehalose degradation II (trehalase),
trehalose biosynthesis I 		0.64 0.32 -0.32 C0255
72 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		-0.62 0.45 -0.43 C0073
73 C0140 Lysine L-Lysine L-Lysine lysine degradation II,
tRNA charging,
lysine biosynthesis VI,
lysine degradation I 		-0.62 0.33 -0.31 C0140