AT1G02910 : LOW PSII ACCUMULATION1
Query Information
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AGICode AT1G02910
Description tetratricopeptide repeat (TPR)-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G02910 tetratricopeptide repeat (TPR)-containing protein LOW PSII ACCUMULATION1 1 0.32 -0.31
2 AT2G30695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein folding, protein transport; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins in
72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75
(source: NCBI BLink).		 0.91 0.36 -0.32
3 AT1G76450 Photosystem II reaction center PsbP family protein 0.9 0.33 -0.33
4 AT5G06290 2-cysteine peroxiredoxin B 2-cysteine peroxiredoxin B, 2-CYS
PEROXIREDOXIN B		 0.9 0.33 -0.33
5 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.9 0.32 -0.34
6 AT5G18660 NAD(P)-binding Rossmann-fold superfamily protein PALE-GREEN AND CHLOROPHYLL B
REDUCED 2		 0.89 0.32 -0.31
7 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.89 0.31 -0.31
8 AT3G62910 Peptide chain release factor 1 ALBINO AND PALE GREEN 0.89 0.32 -0.29
9 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.89 0.3 -0.31
10 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 25
Blast hits to 25 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.89 0.3 -0.33
11 AT1G14270 CAAX amino terminal protease family protein 0.89 0.33 -0.34
12 AT3G24430 ATP binding HIGH-CHLOROPHYLL-FLUORESCENCE 101 0.88 0.31 -0.3
13 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.88 0.32 -0.34
14 AT1G08520 ALBINA 1 ALB-1V, ALBINA 1, CHLD, PIGMENT
DEFECTIVE EMBRYO 166, V157		 0.88 0.3 -0.32
15 AT3G14930 Uroporphyrinogen decarboxylase HEME1 0.88 0.31 -0.33
16 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.88 0.31 -0.32
17 AT4G04350 tRNA synthetase class I (I, L, M and V) family protein EMBRYO DEFECTIVE 2369 0.88 0.31 -0.33
18 AT1G49380 cytochrome c biogenesis protein family 0.88 0.31 -0.32
19 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.88 0.31 -0.31
20 AT4G34090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G23370.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.88 0.33 -0.33
21 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.88 0.3 -0.33
22 AT3G51820 UbiA prenyltransferase family protein ATG4, CHLG, G4, PIGMENT DEFECTIVE
325		 0.87 0.32 -0.33
23 AT4G01800 Albino or Glassy Yellow 1 Albino or Glassy Yellow 1,
Arabidopsis thaliana chloroplast
SecA, SECA1		 0.87 0.32 -0.33
24 AT2G35410 RNA-binding (RRM/RBD/RNP motifs) family protein 0.87 0.3 -0.32
25 AT5G05740 ethylene-dependent gravitropism-deficient and
yellow-green-like 2		 ATEGY2, ethylene-dependent
gravitropism-deficient and
yellow-green-like 2		 0.87 0.32 -0.32
26 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.87 0.3 -0.31
27 AT1G60990 Glycine cleavage T-protein family 0.87 0.31 -0.32
28 AT3G03710 polyribonucleotide nucleotidyltransferase, putative PIGMENT DEFECTIVE 326,
POLYNUCLEOTIDE PHOSPHORYLASE,
resistant to inhibition with FSM
10		 0.86 0.31 -0.31
29 AT1G32200 phospholipid/glycerol acyltransferase family protein ACYLTRANSFERASE 1, ATS1 0.86 0.31 -0.32
30 AT3G12080 GTP-binding family protein embryo defective 2738 0.86 0.31 -0.29
31 AT3G25660 Amidase family protein 0.86 0.32 -0.33
32 AT3G43540 Protein of unknown function (DUF1350) 0.86 0.34 -0.32
33 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.86 0.3 -0.31
34 AT2G28800 63 kDa inner membrane family protein ALBINO 3 0.86 0.31 -0.31
35 AT1G64680 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits
to 146 proteins in 26 species: Archae - 0; Bacteria - 6;
Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other
Eukaryotes - 15 (source: NCBI BLink).		 0.86 0.31 -0.33
36 AT1G29070 Ribosomal protein L34 0.86 0.32 -0.31
37 AT5G51100 Fe superoxide dismutase 2 Fe superoxide dismutase 2 0.86 0.31 -0.31
38 AT5G57960 GTP-binding protein, HflX 0.86 0.32 -0.32
39 AT1G50450 Saccharopine dehydrogenase 0.86 0.32 -0.33
40 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.86 0.3 -0.32
41 AT5G46420 16S rRNA processing protein RimM family 0.86 0.32 -0.29
42 AT5G42765 INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine
translocation pathway, signal sequence
(InterPro:IPR006311); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.85 0.3 -0.32
43 AT5G48220 Aldolase-type TIM barrel family protein 0.85 0.31 -0.33
44 AT2G04039 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2996
(InterPro:IPR021374); Has 159 Blast hits to 159 proteins in
52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi -
0; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source:
NCBI BLink).		 0.85 0.33 -0.33
45 AT3G18390 CRS1 / YhbY (CRM) domain-containing protein embryo defective 1865 0.85 0.31 -0.33
46 AT2G39140 pseudouridine synthase family protein PIGMENT DEFECTIVE 328, SUPPRESSOR
OF VARIEGATION 1		 0.85 0.32 -0.33
47 AT4G35250 NAD(P)-binding Rossmann-fold superfamily protein 0.85 0.32 -0.33
48 AT4G39460 S-adenosylmethionine carrier 1 S-adenosylmethionine carrier 1,
SAM TRANSPORTER1		 0.85 0.31 -0.32
49 AT1G64150 Uncharacterized protein family (UPF0016) 0.85 0.3 -0.33
50 AT2G45770 signal recognition particle receptor protein, chloroplast
(FTSY)		 CPFTSY, FERRIC CHELATE REDUCTASE
DEFECTIVE 4		 0.85 0.32 -0.33
51 AT5G49030 tRNA synthetase class I (I, L, M and V) family protein ovule abortion 2 0.85 0.33 -0.33
52 AT3G51140 Protein of unknown function (DUF3353) 0.85 0.28 -0.32
53 AT2G41340 RNA polymerase II fifth largest subunit, D RNA polymerase II fifth largest
subunit, D		 0.85 0.32 -0.3
54 AT1G08550 non-photochemical quenching 1 ARABIDOPSIS VIOLAXANTHIN
DE-EPOXIDASE 1, non-photochemical
quenching 1		 0.84 0.31 -0.31
55 AT3G60750 Transketolase 0.84 0.32 -0.31
56 AT3G10840 alpha/beta-Hydrolases superfamily protein 0.84 0.32 -0.32
57 AT3G02660 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial EMBRYO DEFECTIVE 2768 0.84 0.32 -0.3
58 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.84 0.31 -0.31
59 AT3G26744 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 A. THALIANA INDUCER OF CBP
EXPRESSION 1, INDUCER OF CBF
EXPRESSION 1, SCREAM		 0.84 0.32 -0.3
60 AT3G19810 Protein of unknown function (DUF177) 0.84 0.31 -0.3
61 AT5G28750 Bacterial sec-independent translocation protein mttA/Hcf106 0.84 0.31 -0.33
62 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.84 0.33 -0.33
63 AT3G47650 DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.84 0.29 -0.3
64 AT3G26900 shikimate kinase like 1 Arabidopsis thaliana shikimate
kinase-like 1, shikimate
kinase-like 1		 0.84 0.29 -0.3
65 AT5G54180 plastid transcriptionally active 15 plastid transcriptionally active
15		 0.84 0.31 -0.33
66 AT5G08650 Small GTP-binding protein 0.84 0.31 -0.3
67 AT3G25290 Auxin-responsive family protein -0.8 0.3 -0.3
68 AT4G29690 Alkaline-phosphatase-like family protein -0.77 0.31 -0.31
69 AT5G24290 Vacuolar iron transporter (VIT) family protein -0.74 0.33 -0.34
70 AT5G10830 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.71 0.32 -0.31
71 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.69 0.31 -0.3
72 AT1G09740 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.69 0.32 -0.32
73 AT2G43610 Chitinase family protein -0.69 0.31 -0.33
74 AT1G62660 Glycosyl hydrolases family 32 protein -0.68 0.31 -0.31
75 AT3G21710 unknown protein; Has 42 Blast hits to 42 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.68 0.32 -0.29
76 AT4G22610 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.67 0.31 -0.34
77 AT3G15510 NAC domain containing protein 2 Arabidopsis NAC domain containing
protein 56, NAC domain containing
protein 2, NAC domain containing
protein 2, NAC-REGULATED SEED
MORPHOLOGY 1		 -0.67 0.33 -0.31
78 AT5G06300 Putative lysine decarboxylase family protein LONELY GUY 7 -0.66 0.32 -0.33
79 AT5G01830 ARM repeat superfamily protein -0.66 0.29 -0.33
80 AT5G59530 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.66 0.32 -0.31
81 AT5G35940 Mannose-binding lectin superfamily protein -0.65 0.31 -0.31
82 AT5G48110 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.65 0.33 -0.32
83 AT2G01880 purple acid phosphatase 7 PURPLE ACID PHOSPHATASE 7, purple
acid phosphatase 7		 -0.64 0.31 -0.33
84 AT1G13280 allene oxide cyclase 4 allene oxide cyclase 4 -0.64 0.31 -0.33