AT1G72960 : -
Query Information
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AGICode AT1G72960
Description Root hair defective 3 GTP-binding protein (RHD3)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G72960 Root hair defective 3 GTP-binding protein (RHD3) 1 0.31 -0.33
2 AT5G22550 Plant protein of unknown function (DUF247) -0.76 0.32 -0.32
3 AT2G30840 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.72 0.3 -0.3
4 AT5G59590 UDP-glucosyl transferase 76E2 UDP-glucosyl transferase 76E2 -0.72 0.29 -0.34
5 AT1G33280 NAC domain containing protein 15 NAC domain containing protein 15,
BEARSKIN 1, NAC domain containing
protein 15		 -0.72 0.33 -0.31
6 AT1G51880 root hair specific 6 root hair specific 6 0.71 0.32 -0.3
7 AT4G20235 cytochrome P450, family 71, subfamily A, polypeptide 28 cytochrome P450, family 71,
subfamily A, polypeptide 28		 -0.71 0.32 -0.31
8 AT2G02515 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: central cell, embryo;
EXPRESSED DURING: C globular stage; Has 18 Blast hits to 17
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.71 0.3 -0.3
9 AT3G27700 zinc finger (CCCH-type) family protein / RNA recognition
motif (RRM)-containing protein		 -0.7 0.32 -0.31
10 AT5G19520 mechanosensitive channel of small conductance-like 9 ATMSL9, mechanosensitive channel
of small conductance-like 9		 -0.69 0.33 -0.3
11 AT1G53080 Legume lectin family protein 0.69 0.3 -0.33
12 AT3G23800 selenium-binding protein 3 selenium-binding protein 3 -0.68 0.33 -0.31
13 AT5G26120 alpha-L-arabinofuranosidase 2 alpha-L-arabinofuranosidase 2,
ARABIDOPSIS THALIANA
ALPHA-L-ARABINOFURANOSIDASE 2		 0.68 0.3 -0.33
14 AT3G20190 Leucine-rich repeat protein kinase family protein 0.68 0.33 -0.32
15 AT5G13560 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast
hits to 8846 proteins in 811 species: Archae - 217;
Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants -
528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI
BLink).		 -0.67 0.34 -0.33
16 AT2G07070 transposable element gene -0.67 0.32 -0.32
17 AT5G42340 Plant U-Box 15 Plant U-Box 15 0.67 0.32 -0.29
18 AT1G56145 Leucine-rich repeat transmembrane protein kinase -0.67 0.32 -0.34
19 AT2G05850 serine carboxypeptidase-like 38 serine carboxypeptidase-like 38 0.67 0.3 -0.33
20 AT4G35890 winged-helix DNA-binding transcription factor family
protein		 -0.67 0.31 -0.32
21 AT5G52850 Pentatricopeptide repeat (PPR) superfamily protein -0.67 0.31 -0.32
22 AT3G66656 AGAMOUS-like 91 AGAMOUS-like 91 0.67 0.3 -0.33
23 AT4G19370 Protein of unknown function (DUF1218) -0.67 0.33 -0.29
24 AT1G34210 somatic embryogenesis receptor-like kinase 2 ATSERK2, somatic embryogenesis
receptor-like kinase 2		 -0.66 0.31 -0.31
25 AT5G50300 Xanthine/uracil permease family protein ARABIDOPSIS THALIANA AZA-GUANINE
RESISTANT2, AZA-GUANINE RESISTANT2		 -0.66 0.3 -0.29
26 AT2G43420 3-beta hydroxysteroid dehydrogenase/isomerase family
protein		 -0.66 0.3 -0.31
27 AT1G10950 transmembrane nine 1 AtTMN1, transmembrane nine 1 -0.66 0.3 -0.31
28 AT3G05960 sugar transporter 6 SUGAR TRANSPORTER 6, sugar
transporter 6		 -0.65 0.31 -0.3
29 AT1G35380 transposable element gene 0.65 0.33 -0.32
30 AT2G26650 K+ transporter 1 K+ transporter 1, ATAKT1, K+
transporter 1		 -0.65 0.32 -0.32
31 AT5G64690 neurofilament triplet H protein-related -0.65 0.31 -0.35
32 AT5G15581 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: leaf apex; Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.65 0.32 -0.33
33 AT3G21180 autoinhibited Ca(2+)-ATPase 9 autoinhibited Ca(2+)-ATPase 9,
ATACA9		 -0.65 0.29 -0.33
34 AT1G70180 Sterile alpha motif (SAM) domain-containing protein -0.65 0.35 -0.31
35 AT1G58300 heme oxygenase 4 heme oxygenase 4 -0.65 0.31 -0.34
36 AT3G49860 ADP-ribosylation factor-like A1B ADP-ribosylation factor-like A1B,
ADP-ribosylation factor-like A1B		 -0.65 0.31 -0.34
37 AT3G43630 Vacuolar iron transporter (VIT) family protein -0.65 0.32 -0.29
38 AT3G42430 transposable element gene 0.64 0.3 -0.3
39 AT3G51680 NAD(P)-binding Rossmann-fold superfamily protein AtSDR2, short-chain
dehydrogenase/reductase 2		 -0.64 0.33 -0.31
40 AT1G49150 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.64 0.31 -0.33
41 AT1G74490 Protein kinase superfamily protein -0.64 0.29 -0.32
42 AT5G17140 Cysteine proteinases superfamily protein -0.64 0.32 -0.31
43 AT3G13730 cytochrome P450, family 90, subfamily D, polypeptide 1 cytochrome P450, family 90,
subfamily D, polypeptide 1		 -0.64 0.31 -0.3
44 AT4G22130 STRUBBELIG-receptor family 8 STRUBBELIG-receptor family 8 -0.64 0.32 -0.31
45 AT1G66030 cytochrome P450, family 96, subfamily A, polypeptide 14
pseudogene		 cytochrome P450, family 96,
subfamily A, polypeptide 14
pseudogene		 -0.63 0.29 -0.32
46 AT2G21990 Protein of unknown function, DUF617 0.63 0.29 -0.33
47 AT1G21340 Dof-type zinc finger DNA-binding family protein -0.63 0.31 -0.3
48 AT1G62914 pentatricopeptide (PPR) repeat-containing protein -0.63 0.32 -0.29
49 AT3G09090 defective in exine formation protein (DEX1) DEFECTIVE IN EXINE FORMATION 1 -0.62 0.31 -0.33
50 AT2G22410 SLOW GROWTH 1 SLOW GROWTH 1 -0.62 0.31 -0.3
51 AT2G39380 exocyst subunit exo70 family protein H2 exocyst subunit exo70 family
protein H2, exocyst subunit exo70
family protein H2		 -0.62 0.3 -0.31
52 AT5G11290 Plant protein of unknown function (DUF247) -0.62 0.31 -0.31
53 AT3G53820 C2H2 and C2HC zinc fingers superfamily protein -0.62 0.31 -0.31
54 AT1G13540 Protein of unknown function (DUF1262) 0.62 0.32 -0.31
55 AT3G13130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: male gametophyte; Has
140 Blast hits to 132 proteins in 41 species: Archae - 2;
Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51;
Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).		 0.62 0.34 -0.32
56 AT5G57320 villin, putative villin 5 -0.62 0.29 -0.32
57 AT2G24640 ubiquitin-specific protease 19 ubiquitin-specific protease 19 -0.62 0.32 -0.31
58 AT2G23800 geranylgeranyl pyrophosphate synthase 2 geranylgeranyl pyrophosphate
synthase 2, GERANYLGERANYL
PYROPHOSPHATE SYNTHASE 5		 0.62 0.32 -0.31
59 AT4G32630 ArfGap/RecO-like zinc finger domain-containing protein 0.62 0.33 -0.32
60 AT5G09370 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.62 0.3 -0.3
61 AT1G75430 BEL1-like homeodomain 11 BEL1-like homeodomain 11 -0.62 0.3 -0.32
62 AT2G29780 Galactose oxidase/kelch repeat superfamily protein -0.62 0.31 -0.31
63 AT5G06020 Plant self-incompatibility protein S1 family 0.62 0.32 -0.33
64 AT1G41797 transposable element gene 0.62 0.32 -0.31
65 AT5G06839 bZIP transcription factor family protein bZIP65, TGACG (TGA) motif-binding
protein 10		 -0.62 0.3 -0.32
66 AT4G11590 F-box associated ubiquitination effector family protein -0.61 0.32 -0.32
67 AT2G21470 SUMO-activating enzyme 2 SUMO-ACTIVATING ENZYME 2, EMBRYO
DEFECTIVE 2764, SUMO-activating
enzyme 2		 -0.61 0.29 -0.29
68 AT3G50230 Leucine-rich repeat protein kinase family protein -0.61 0.32 -0.31
69 AT2G28680 RmlC-like cupins superfamily protein -0.61 0.31 -0.33
70 AT5G30470 transposable element gene -0.61 0.3 -0.3
71 AT4G02190 Cysteine/Histidine-rich C1 domain family protein 0.61 0.31 -0.31
72 AT1G48330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits
to 40 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.61 0.33 -0.33
73 AT2G04710 transposable element gene -0.61 0.32 -0.3
74 AT3G51520 diacylglycerol acyltransferase family 0.61 0.31 -0.32
75 AT5G47620 RNA-binding (RRM/RBD/RNP motifs) family protein -0.61 0.31 -0.32
76 AT1G15640 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G15620.1); Has 154 Blast hits
to 146 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.34 -0.29
77 AT5G58010 LJRHL1-like 3 LJRHL1-like 3 -0.61 0.3 -0.33
78 AT3G27980 Plant invertase/pectin methylesterase inhibitor superfamily 0.6 0.33 -0.32
79 AT4G34500 Protein kinase superfamily protein 0.6 0.32 -0.3
80 AT5G23750 Remorin family protein 0.6 0.31 -0.33
81 AT3G42100 transposable element gene -0.6 0.32 -0.31
82 AT5G49470 PAS domain-containing protein tyrosine kinase family
protein		 -0.6 0.31 -0.31
83 AT3G55160 unknown protein; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF2428, death-receptor-like
(InterPro:IPR019442); Has 357 Blast hits to 330 proteins in
163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi
- 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45
(source: NCBI BLink).		 -0.6 0.33 -0.33
84 AT2G33520 unknown protein; Has 68 Blast hits to 68 proteins in 18
species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 2;
Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.6 0.31 -0.31
85 AT1G04930 hydroxyproline-rich glycoprotein family protein 0.6 0.32 -0.32
86 AT5G40360 myb domain protein 115 myb domain protein 115, myb domain
protein 115		 -0.6 0.33 -0.3
87 AT2G41060 RNA-binding (RRM/RBD/RNP motifs) family protein -0.6 0.31 -0.31
88 AT5G36090 transposable element gene 0.6 0.33 -0.32
89 AT1G50760 Aminotransferase-like, plant mobile domain family protein -0.6 0.33 -0.31
90 AT5G49260 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.6 0.31 -0.3
91 AT3G14400 ubiquitin-specific protease 25 ubiquitin-specific protease 25 -0.6 0.31 -0.32
92 AT2G07360 SH3 domain-containing protein -0.6 0.31 -0.31
93 AT1G09940 Glutamyl-tRNA reductase family protein HEMA2 -0.6 0.32 -0.32
94 AT4G18720 Transcription factor IIS protein 0.59 0.32 -0.32
95 AT1G05550 Protein of unknown function (DUF295) -0.59 0.31 -0.32
96 AT1G66480 plastid movement impaired 2 -0.59 0.32 -0.33
97 AT4G05550 transposable element gene 0.59 0.32 -0.33
98 AT5G08100 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein		 asparaginase A1 0.59 0.31 -0.32
99 AT3G30846 transposable element gene 0.59 0.31 -0.32
100 AT2G45920 U-box domain-containing protein -0.59 0.33 -0.3
101 AT3G44460 Basic-leucine zipper (bZIP) transcription factor family
protein		 basic leucine zipper transcription
factor 67, DPBF2		 -0.59 0.32 -0.29
102 AT1G55660 FBD, F-box and Leucine Rich Repeat domains containing
protein		 0.59 0.31 -0.31
103 AT5G05480 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A
protein		 -0.59 0.3 -0.3
104 AT5G51900 Cytochrome P450 family protein 0.59 0.31 -0.32
105 AT2G06640 transposable element gene 0.59 0.32 -0.31
106 AT4G07580 transposable element gene 0.59 0.3 -0.32
107 AT4G00520 Acyl-CoA thioesterase family protein 0.58 0.32 -0.3
108 AT4G18890 BES1/BZR1 homolog 3 BES1/BZR1 homolog 3 -0.58 0.32 -0.33
109 AT3G32110 transposable element gene -0.58 0.32 -0.32
110 AT3G12203 serine carboxypeptidase-like 17 serine carboxypeptidase-like 17 0.58 0.32 -0.32
111 AT3G15890 Protein kinase superfamily protein 0.58 0.32 -0.3
112 AT1G22620 Phosphoinositide phosphatase family protein suppressor of actin 1 -0.58 0.33 -0.31
113 AT2G27700 eukaryotic translation initiation factor 2 family protein /
eIF-2 family protein		 -0.58 0.31 -0.33
114 ATMG01350 hypothetical protein ORF145C -0.58 0.31 -0.29
115 AT5G02600 Heavy metal transport/detoxification superfamily protein SODIUM POTASSIUM ROOT DEFECTIVE 1,
nuclear-enriched phloem companion
cell gene 6		 0.58 0.3 -0.31
116 AT3G42390 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.58 0.29 -0.32
117 AT4G07540 transposable element gene 0.58 0.31 -0.34
118 AT1G35220 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 313
Blast hits to 185 proteins in 75 species: Archae - 0;
Bacteria - 0; Metazoa - 200; Fungi - 0; Plants - 67;
Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).		 -0.58 0.31 -0.32
119 AT2G43930 Protein kinase superfamily protein -0.58 0.3 -0.33
120 AT4G19000 Transcription elongation factor (TFIIS) family protein ARABIDOPSIS THALIANA IWS2 (FROM
YEAST INTERACTS WITH SPT6), IWS2		 -0.58 0.32 -0.3
121 AT2G27250 CLAVATA3 AtCLV3, CLAVATA3 0.57 0.33 -0.33
122 AT5G65590 Dof-type zinc finger DNA-binding family protein 0.57 0.32 -0.32
123 AT1G14800 Nucleic acid-binding, OB-fold-like protein 0.57 0.3 -0.34
124 AT2G05950 transposable element gene 0.57 0.29 -0.31
125 AT2G33000 ubiquitin-associated (UBA)/TS-N domain-containing
protein-related		 0.56 0.29 -0.33
126 AT4G38670 Pathogenesis-related thaumatin superfamily protein 0.56 0.3 -0.31
127 AT2G07190 Domain of unknown function (DUF1985) 0.56 0.3 -0.32
128 AT4G17000 unknown protein; Has 2862 Blast hits to 2331 proteins in
349 species: Archae - 6; Bacteria - 408; Metazoa - 833;
Fungi - 223; Plants - 134; Viruses - 7; Other Eukaryotes -
1251 (source: NCBI BLink).		 0.56 0.32 -0.31
129 AT1G14750 Cyclin family protein SOLO DANCERS 0.56 0.3 -0.34
130 AT2G38060 phosphate transporter 4;2 phosphate transporter 4;2 0.56 0.32 -0.34
131 AT2G26420 1-phosphatidylinositol-4-phosphate 5-kinase 3 1-phosphatidylinositol-4-phosphate
5-kinase 3		 0.56 0.32 -0.32
132 AT2G23900 Pectin lyase-like superfamily protein 0.55 0.3 -0.32
133 AT3G30740 40S ribosomal protein S25 (RPS25C), pseudogene, similar to
GB:P46301 GI:1173234 40S RIBOSOMAL PROTEIN S25 from
(Lycopersicon esculentum); blastp match of 75% identity and
7.2e-09 P-value to SP|P46301|RS25_LYCES 40S ribosomal
protein S25. (Tomato) {Lycopersicon esculentum}		 0.55 0.32 -0.3
134 AT3G02770 Ribonuclease E inhibitor RraA/Dimethylmenaquinone
methyltransferase		 0.55 0.29 -0.31
135 AT1G35780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G78150.2); Has 145 Blast hits
to 144 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.55 0.33 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
136 C0158 MST_1480.5 - - - 0.68 0.43 -0.45
137 C0255 Trehalose α,α-D-Trehalose Trehalose trehalose degradation II (trehalase),
trehalose biosynthesis I 		0.59 0.3 -0.33 C0255