AT1G15420 : -
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AGICode AT1G15420
Description CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G15420 CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12
(InterPro:IPR007148); Has 764 Blast hits to 656 proteins in
193 species: Archae - 0; Bacteria - 42; Metazoa - 237;
Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes -
223 (source: NCBI BLink).
1 0.32 -0.3
2 AT1G18850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 40 Blast hits to 40 proteins
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).
0.89 0.3 -0.31
3 AT5G11240 transducin family protein / WD-40 repeat family protein 0.87 0.3 -0.32
4 AT3G25940 TFIIB zinc-binding protein 0.86 0.33 -0.3
5 AT4G15770 RNA binding 0.86 0.31 -0.31
6 AT5G06110 DnaJ domain ;Myb-like DNA-binding domain 0.86 0.3 -0.33
7 AT5G05210 Surfeit locus protein 6 0.85 0.32 -0.33
8 AT5G59980 Polymerase/histidinol phosphatase-like 0.85 0.32 -0.29
9 AT3G26410 methyltransferases;nucleic acid binding AtTRM11, tRNA modification 11 0.84 0.29 -0.32
10 AT1G48920 nucleolin like 1 nucleolin like 1, nucleolin like
1, PARALLEL 1
0.84 0.33 -0.34
11 AT1G31660 CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955);
Has 475 Blast hits to 467 proteins in 210 species: Archae -
0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55;
Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
0.84 0.31 -0.3
12 AT4G02220 zinc finger (MYND type) family protein / programmed cell
death 2 C-terminal domain-containing protein
0.83 0.3 -0.34
13 AT4G34910 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
0.83 0.31 -0.31
14 AT5G22840 Protein kinase superfamily protein 0.83 0.31 -0.33
15 AT5G19320 RAN GTPase activating protein 2 RAN GTPase activating protein 2 0.82 0.31 -0.32
16 AT1G80750 Ribosomal protein L30/L7 family protein 0.82 0.32 -0.31
17 AT5G14050 Transducin/WD40 repeat-like superfamily protein 0.82 0.29 -0.31
18 AT5G61770 PETER PAN-like protein PETER PAN-like protein 0.82 0.32 -0.32
19 AT3G13940 DNA binding;DNA-directed RNA polymerases 0.82 0.31 -0.33
20 AT5G52470 fibrillarin 1 ATFBR1, ATFIB1, FIBRILLARIN 1,
fibrillarin 1,
SKP1/ASK1-INTERACTING PROTEIN
0.82 0.31 -0.32
21 AT3G22660 rRNA processing protein-related 0.82 0.33 -0.32
22 AT1G02870 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Ribosome biogenesis protein Nop16
(InterPro:IPR019002); Has 104 Blast hits to 104 proteins in
57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).
0.82 0.32 -0.31
23 AT4G02400 U3 ribonucleoprotein (Utp) family protein 0.82 0.31 -0.33
24 AT4G05410 Transducin/WD40 repeat-like superfamily protein YAOZHE 0.82 0.31 -0.3
25 AT1G69250 Nuclear transport factor 2 (NTF2) family protein with RNA
binding (RRM-RBD-RNP motifs) domain
0.82 0.32 -0.32
26 AT1G03530 nuclear assembly factor 1 ATNAF1, nuclear assembly factor 1 0.81 0.32 -0.31
27 AT5G57990 ubiquitin-specific protease 23 ubiquitin-specific protease 23 0.81 0.31 -0.3
28 AT3G10530 Transducin/WD40 repeat-like superfamily protein 0.81 0.31 -0.32
29 AT2G21440 RNA-binding (RRM/RBD/RNP motifs) family protein 0.81 0.33 -0.33
30 AT5G41190 CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1)
Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA
nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).
0.81 0.33 -0.31
31 AT1G04870 protein arginine methyltransferase 10 ATPRMT10, protein arginine
methyltransferase 10
0.81 0.33 -0.35
32 AT2G25970 KH domain-containing protein 0.81 0.33 -0.32
33 AT1G75200 flavodoxin family protein / radical SAM domain-containing
protein
0.81 0.31 -0.31
34 AT4G29510 arginine methyltransferase 11 ARABIDOPSIS THALIANA ARGININE
METHYLTRANSFERASE 11, ARABIDOPSIS
THALIANA PROTEIN ARGININE
METHYLTRANSFERASE 1B, arginine
methyltransferase 11, PROTEIN
ARGININE METHYLTRANSFERASE 1B
0.81 0.29 -0.33
35 AT5G62440 Protein of unknown function (DUF3223) 0.81 0.31 -0.31
36 AT2G40700 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
0.8 0.3 -0.3
37 AT1G26670 Vesicle transport v-SNARE family protein ATVTI12, VESICAL TRANSPORT V-SNARE
12, VTI1B
-0.8 0.34 -0.33
38 AT2G34357 ARM repeat superfamily protein 0.8 0.31 -0.31
39 AT1G72440 CCAAT-binding factor embryo sac development arrest 25,
SLOW WALKER2
0.8 0.31 -0.32
40 AT1G52930 Ribosomal RNA processing Brix domain protein 0.8 0.31 -0.32
41 AT2G18520 Tetratricopeptide repeat (TPR)-like superfamily protein 0.8 0.32 -0.31
42 AT1G79490 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 2217 0.8 0.33 -0.31
43 AT2G18900 Transducin/WD40 repeat-like superfamily protein 0.8 0.33 -0.32
44 AT5G18630 alpha/beta-Hydrolases superfamily protein -0.8 0.29 -0.32
45 AT1G06670 nuclear DEIH-boxhelicase nuclear DEIH-boxhelicase 0.8 0.3 -0.32
46 AT5G64680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 114 Blast hits to 110
proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa -
42; Fungi - 10; Plants - 37; Viruses - 0; Other Eukaryotes
- 25 (source: NCBI BLink).
0.79 0.31 -0.31
47 AT2G34570 PIN domain-like family protein maternal effect embryo arrest 21 0.79 0.3 -0.32
48 AT3G01820 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
0.79 0.33 -0.33
49 AT5G23050 acyl-activating enzyme 17 acyl-activating enzyme 17 -0.79 0.34 -0.33
50 AT5G57280 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein
root initiation defective 2 0.79 0.32 -0.32
51 AT1G79150 binding 0.79 0.3 -0.32
52 AT3G03920 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.79 0.34 -0.32
53 AT5G57870 MIF4G domain-containing protein / MA3 domain-containing
protein
eukaryotic translation Initiation
Factor isoform 4G1
0.79 0.33 -0.31
54 AT3G12270 protein arginine methyltransferase 3 ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 3,
protein arginine methyltransferase
3
0.79 0.34 -0.32
55 AT1G42440 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948),
Protein of unknown function DUF663 (InterPro:IPR007034);
BEST Arabidopsis thaliana protein match is: P-loop
containing nucleoside triphosphate hydrolases superfamily
protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088
proteins in 291 species: Archae - 2; Bacteria - 131;
Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49;
Other Eukaryotes - 905 (source: NCBI BLink).
0.79 0.3 -0.31
56 AT5G20600 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA
processing; LOCATED IN: preribosome, small subunit
precursor; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits
to 530 proteins in 201 species: Archae - 0; Bacteria - 10;
Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other
Eukaryotes - 112 (source: NCBI BLink).
0.79 0.3 -0.32
57 AT5G12220 las1-like family protein 0.78 0.33 -0.32
58 AT5G01230 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein
0.78 0.29 -0.29
59 AT4G16520 Ubiquitin-like superfamily protein autophagy 8f -0.78 0.32 -0.31
60 AT3G13150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.78 0.31 -0.33
61 AT4G32400 Mitochondrial substrate carrier family protein ARABIDOPSIS THALIANA BRITTLE 1,
EMBRYO DEFECTIVE 104, EMBRYO
DEFECTIVE 42, SODIUM
HYPERSENSITIVE 1
0.78 0.33 -0.29
62 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
0.78 0.3 -0.32
63 AT2G40430 CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687),
Tumour suppressor protein Gltscr2 (InterPro:IPR011211); Has
709 Blast hits to 643 proteins in 201 species: Archae - 0;
Bacteria - 32; Metazoa - 224; Fungi - 154; Plants - 45;
Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).
0.78 0.32 -0.31
64 AT3G63400 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein
0.78 0.32 -0.29
65 AT1G55900 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein
embryo defective 1860, TIM50 0.78 0.34 -0.33
66 AT5G08620 DEA(D/H)-box RNA helicase family protein RNA HELICASE 25, STRESS RESPONSE
SUPPRESSOR 2
0.78 0.31 -0.36
67 AT2G03820 nonsense-mediated mRNA decay NMD3 family protein 0.78 0.3 -0.3
68 AT2G26060 Transducin/WD40 repeat-like superfamily protein embryo defective 1345 0.77 0.33 -0.32
69 AT5G16040 Regulator of chromosome condensation (RCC1) family protein 0.77 0.3 -0.3
70 AT1G25260 Ribosomal protein L10 family protein 0.77 0.3 -0.3
71 AT5G52820 WD-40 repeat family protein / notchless protein, putative 0.77 0.32 -0.3
72 AT3G54540 general control non-repressible 4 ATP-binding cassette F4, general
control non-repressible 4, general
control non-repressible 4
0.77 0.29 -0.32
73 AT4G24270 EMBRYO DEFECTIVE 140 EMBRYO DEFECTIVE 140 0.77 0.31 -0.34
74 AT4G31120 SHK1 binding protein 1 ATPRMT5, PROTEIN ARGININE
METHYLTRANSFERASE 5, SHK1 binding
protein 1
0.77 0.34 -0.31
75 AT2G44510 CDK inhibitor P21 binding protein 0.77 0.31 -0.32
76 AT3G21540 transducin family protein / WD-40 repeat family protein 0.77 0.31 -0.33
77 AT1G01940 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein
0.77 0.33 -0.3
78 AT4G10760 mRNAadenosine methylase EMBRYO DEFECTIVE 1706,
mRNAadenosine methylase
0.76 0.33 -0.33
79 AT3G53950 glyoxal oxidase-related protein -0.76 0.35 -0.28
80 AT2G17670 Tetratricopeptide repeat (TPR)-like superfamily protein 0.76 0.33 -0.32
81 AT3G12860 NOP56-like pre RNA processing ribonucleoprotein 0.76 0.32 -0.3
82 AT1G63160 replication factor C 2 EMBRYO DEFECTIVE 2811, replication
factor C 2
0.76 0.3 -0.31
83 AT5G66540 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA
processing; LOCATED IN: cytosol, nucleolus, nucleus;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12
growth stages; CONTAINS InterPro DOMAIN/s: U3 small
nucleolar ribonucleoprotein complex, subunit Mpp10p
(InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).
0.75 0.32 -0.31
84 AT5G12200 pyrimidine 2 pyrimidine 2 -0.75 0.3 -0.31
85 AT5G22330 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
ATTIP49A, RESISTANCE TO
PSEUDOMONAS SYRINGAE PV MACULICOLA
INTERACTOR 1
0.75 0.3 -0.31
86 AT3G19440 Pseudouridine synthase family protein 0.75 0.29 -0.32
87 AT3G07050 GTP-binding family protein nucleostemin-like 1 0.75 0.32 -0.33
88 AT1G30960 GTP-binding family protein 0.75 0.34 -0.32
89 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5
-0.74 0.32 -0.33
90 AT3G10420 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
SEEDLING PLASTID DEVELOPMENT 1 -0.73 0.32 -0.31
91 AT1G09415 NIM1-interacting 3 NIM1-interacting 3 -0.73 0.31 -0.32
92 AT1G04350 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein
-0.73 0.33 -0.31
93 AT5G16800 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.73 0.32 -0.32
94 AT5G37930 Protein with RING/U-box and TRAF-like domains -0.73 0.31 -0.35
95 AT1G80920 Chaperone DnaJ-domain superfamily protein AtJ8, translocon at the outer
envelope membrane of chloroplasts
12, J8, translocon at the outer
envelope membrane of chloroplasts
12
-0.72 0.31 -0.32
96 AT3G58170 BET1P/SFT1P-like protein 14A ATBET11, ARABIDOPSIS THALIANA
BET1P/SFT1P-LIKE PROTEIN 14A,
BET11, BET1P/SFT1P-like protein
14A
-0.72 0.31 -0.31
97 AT4G33960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G15830.1); Has 32 Blast hits to 32 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
-0.71 0.32 -0.33
98 AT1G54680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G27290.1); Has 200 Blast hits to 200 proteins in
57 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi -
0; Plants - 127; Viruses - 0; Other Eukaryotes - 14
(source: NCBI BLink).
-0.71 0.31 -0.33
99 AT4G22200 potassium transport 2/3 AKT2, potassium transport 2/3,
AKT3, potassium transport 2/3
-0.71 0.31 -0.31
100 AT3G23080 Polyketide cyclase/dehydrase and lipid transport
superfamily protein
-0.7 0.29 -0.31
101 AT5G27350 Major facilitator superfamily protein SFP1 -0.7 0.31 -0.33
102 AT3G16230 Predicted eukaryotic LigT -0.7 0.29 -0.28
103 AT3G56360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast
hits to 45 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
-0.69 0.34 -0.3
104 AT3G54860 Sec1/munc18-like (SM) proteins superfamily ATVPS33, VACUOLAR PROTEIN SORTING
33
-0.68 0.35 -0.31
105 AT3G59300 Pentatricopeptide repeat (PPR) superfamily protein -0.68 0.32 -0.29
106 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.68 0.31 -0.32
107 AT2G41760 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function WDYHV (InterPro:IPR019161); Has 201 Blast
hits to 201 proteins in 90 species: Archae - 0; Bacteria -
2; Metazoa - 132; Fungi - 10; Plants - 30; Viruses - 0;
Other Eukaryotes - 27 (source: NCBI BLink).
-0.68 0.32 -0.3
108 AT5G48850 Tetratricopeptide repeat (TPR)-like superfamily protein SULPHUR DEFICIENCY-INDUCED 1 -0.67 0.32 -0.31
109 AT4G16770 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein
-0.67 0.33 -0.33
110 AT3G02300 Regulator of chromosome condensation (RCC1) family protein -0.66 0.32 -0.31
111 AT5G27710 unknown protein; Has 49 Blast hits to 49 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).
-0.66 0.31 -0.3
112 AT5G13760 Plasma-membrane choline transporter family protein -0.66 0.32 -0.32
113 AT1G30200 F-box family protein -0.66 0.32 -0.33
114 AT5G26190 Cysteine/Histidine-rich C1 domain family protein -0.66 0.32 -0.32
115 AT5G19150 pfkB-like carbohydrate kinase family protein -0.64 0.32 -0.32
116 AT4G18020 CheY-like two-component responsive regulator family protein APRR2, PSEUDO-RESPONSE REGULATOR 2 -0.64 0.31 -0.32
117 AT5G45370 nodulin MtN21 /EamA-like transporter family protein -0.64 0.32 -0.31
118 AT1G16730 unknown protein 6 unknown protein 6 -0.64 0.32 -0.32
119 AT4G30310 FGGY family of carbohydrate kinase -0.64 0.3 -0.31
120 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.64 0.3 -0.3
121 AT4G12990 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plant-type cell wall; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 4 Blast hits to 4
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).
-0.64 0.3 -0.32
122 AT3G26510 Octicosapeptide/Phox/Bem1p family protein -0.64 0.31 -0.31
123 AT3G51670 SEC14 cytosolic factor family protein / phosphoglyceride
transfer family protein
-0.63 0.33 -0.31
124 AT5G49970 pyridoxin (pyrodoxamine) 5'-phosphate oxidase pyridoxin (pyrodoxamine)
5'-phosphate oxidase, HOMOLOG OF
YEAST PYRIDOXINE AUXOTROPHY 3,
pyridoxin (pyrodoxamine)
5'-phosphate oxidase
-0.62 0.32 -0.34
125 AT5G42370 Calcineurin-like metallo-phosphoesterase superfamily
protein
-0.62 0.33 -0.31
126 AT5G16150 plastidic GLC translocator GLUCOSE TRANSPORTER 1, plastidic
GLC translocator
-0.62 0.31 -0.32
127 AT4G27435 Protein of unknown function (DUF1218) -0.62 0.32 -0.33
128 AT2G45170 AUTOPHAGY 8E AUTOPHAGY 8E, AUTOPHAGY 8E -0.62 0.29 -0.32
129 AT3G23590 REF4-related 1 MED33A, REF4-related 1 -0.61 0.32 -0.33
130 AT1G56710 Pectin lyase-like superfamily protein -0.61 0.33 -0.32
131 AT2G32080 purin-rich alpha 1 purin-rich alpha 1 -0.61 0.32 -0.32
132 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 -0.61 0.31 -0.32
133 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family -0.61 0.33 -0.31
134 AT3G24040 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein
-0.61 0.3 -0.31
135 AT1G25375 Metallo-hydrolase/oxidoreductase superfamily protein -0.61 0.32 -0.31