AT1G28560 : SHOOT REDIFFERENTIATION DEFECTIVE 2
Query Information
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AGICode AT1G28560
Description snRNA activating complex family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G28560 snRNA activating complex family protein SHOOT REDIFFERENTIATION DEFECTIVE
2		 1 0.3 -0.32
2 AT1G23610 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G23640.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.77 0.32 -0.31
3 AT3G56610 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: embryo, sperm cell,
sepal, pedicel, synergid; EXPRESSED DURING: 4 anthesis, C
globular stage; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF784, Arabidopsis thaliana
(InterPro:IPR008502); Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.77 0.31 -0.35
4 AT1G11060 WAPL (Wings apart-like protein regulation of
heterochromatin) protein		 0.75 0.33 -0.31
5 AT5G08440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G23490.1); Has 141 Blast
hits to 139 proteins in 35 species: Archae - 0; Bacteria -
9; Metazoa - 21; Fungi - 6; Plants - 94; Viruses - 0; Other
Eukaryotes - 11 (source: NCBI BLink).		 0.74 0.31 -0.33
6 AT3G24280 small acidic protein 2 small acidic protein 2 0.74 0.33 -0.32
7 AT1G22290 14-3-3 family protein 0.74 0.33 -0.34
8 AT1G19060 Protein of unknown function (DUF626) 0.74 0.32 -0.3
9 AT3G29110 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.74 0.3 -0.3
10 AT5G35420 transposable element gene 0.73 0.3 -0.31
11 AT1G66730 DNA LIGASE 6 DNA LIGASE 6, DNA LIGASE 6 0.73 0.34 -0.31
12 AT5G65820 Pentatricopeptide repeat (PPR) superfamily protein 0.73 0.33 -0.33
13 AT3G27270 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing
protein		 0.71 0.31 -0.33
14 AT1G68480 C2H2 and C2HC zinc fingers superfamily protein JAGGED 0.71 0.31 -0.32
15 AT2G07560 H(+)-ATPase 6 H(+)-ATPase 6, H(+)-ATPase 6 -0.71 0.31 -0.31
16 AT2G35890 calcium-dependent protein kinase 25 calcium-dependent protein kinase
25		 -0.71 0.33 -0.33
17 AT3G56600 Protein kinase superfamily protein -0.7 0.33 -0.33
18 AT1G09550 Pectinacetylesterase family protein 0.7 0.31 -0.32
19 AT1G47655 Dof-type zinc finger DNA-binding family protein -0.7 0.31 -0.32
20 AT5G15110 Pectate lyase family protein 0.7 0.3 -0.32
21 AT1G76630 Tetratricopeptide repeat (TPR)-like superfamily protein 0.7 0.31 -0.33
22 AT3G06230 MAP kinase kinase 8 MAP kinase kinase 8, MAP kinase
kinase 8		 0.69 0.29 -0.32
23 AT4G10820 F-box family protein 0.69 0.31 -0.33
24 AT4G21130 Transducin/WD40 repeat-like superfamily protein EMBRYO DEFECTIVE 2271 -0.69 0.33 -0.32
25 AT5G61650 CYCLIN P4;2 CYCP4, CYCLIN P4;2 -0.69 0.3 -0.33
26 AT5G04880 pseudogene of ABC transporter family protein 0.68 0.32 -0.32
27 AT1G20480 AMP-dependent synthetase and ligase family protein -0.68 0.31 -0.3
28 AT1G26830 cullin 3 cullin 3, cullin 3A, cullin 3,
cullin 3A		 -0.68 0.35 -0.31
29 AT1G79880 RNA recognition motif (RRM)-containing protein 0.68 0.31 -0.29
30 AT4G02170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G38700.1); Has 53 Blast hits
to 53 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.68 0.3 -0.32
31 AT4G20060 ARM repeat superfamily protein EMBRYO DEFECTIVE 1895 0.68 0.3 -0.32
32 AT4G04480 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:
flower, pollen tube; EXPRESSED DURING: petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: F-box family protein with a
domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has
78 Blast hits to 78 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.68 0.32 -0.32
33 AT5G24970 Protein kinase superfamily protein 0.68 0.31 -0.3
34 AT1G31630 AGAMOUS-like 86 AGAMOUS-like 86 -0.68 0.31 -0.31
35 AT3G19950 RING/U-box superfamily protein -0.67 0.33 -0.32
36 AT3G21100 RNA-binding (RRM/RBD/RNP motifs) family protein 0.67 0.33 -0.3
37 AT1G70920 homeobox-leucine zipper protein 18 homeobox-leucine zipper protein
18, homeobox-leucine zipper
protein 18		 -0.67 0.32 -0.32
38 AT5G22420 fatty acid reductase 7 fatty acid reductase 7 -0.67 0.32 -0.31
39 AT1G17590 nuclear factor Y, subunit A8 nuclear factor Y, subunit A8 0.67 0.32 -0.31
40 AT1G58250 Golgi-body localisation protein domain ;RNA pol II promoter
Fmp27 protein domain		 SABRE 0.67 0.3 -0.33
41 AT4G14460 transposable element gene 0.67 0.3 -0.33
42 AT3G29690 HXXXD-type acyl-transferase family protein -0.67 0.31 -0.32
43 AT4G13130 Cysteine/Histidine-rich C1 domain family protein -0.67 0.31 -0.31
44 AT3G13430 RING/U-box superfamily protein -0.67 0.32 -0.31
45 AT4G08710 transposable element gene -0.67 0.32 -0.34
46 AT5G57320 villin, putative villin 5 0.67 0.32 -0.34
47 AT3G60260 ELMO/CED-12 family protein -0.67 0.3 -0.32
48 AT3G55770 GATA type zinc finger transcription factor family protein WLIM2b -0.67 0.32 -0.3
49 AT3G59100 glucan synthase-like 11 glucan synthase-like 11, gsl11,
glucan synthase-like 11		 0.67 0.32 -0.32
50 AT1G31040 PLATZ transcription factor family protein -0.67 0.33 -0.32
51 AT2G30930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plasma membrane, membrane; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G06540.1); Has 194 Blast hits to 176 proteins in
78 species: Archae - 0; Bacteria - 101; Metazoa - 15; Fungi
- 25; Plants - 12; Viruses - 4; Other Eukaryotes - 37
(source: NCBI BLink).		 -0.66 0.31 -0.31
52 AT4G10950 SGNH hydrolase-type esterase superfamily protein 0.66 0.31 -0.3
53 AT3G53610 RAB GTPase homolog 8 RAB GTPase homolog 8, AtRab8B,
AtRABE1a, RAB GTPase homolog 8		 -0.66 0.28 -0.31
54 AT3G18120 F-box associated ubiquitination effector family protein 0.66 0.32 -0.3
55 AT3G24340 chromatin remodeling 40 chromatin remodeling 40 0.66 0.3 -0.33
56 AT2G06120 transposable element gene 0.66 0.32 -0.34
57 AT2G19700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.66 0.31 -0.31
58 AT5G18160 F-box and associated interaction domains-containing protein -0.66 0.34 -0.31
59 AT1G50950 Thioredoxin protein with domain of unknown function
(DUF1692)		 0.66 0.32 -0.32
60 AT4G07790 transposable element gene -0.66 0.32 -0.3
61 AT3G10890 Glycosyl hydrolase superfamily protein -0.66 0.3 -0.32
62 AT1G04050 homolog of SU(var)3-9 1 SET DOMAIN PROTEIN 13, homolog of
SU(var)3-9 1		 0.66 0.32 -0.3
63 AT2G30400 ovate family protein 2 ARABIDOPSIS THALIANA OVATE FAMILY
PROTEIN 2, ovate family protein 2		 -0.66 0.29 -0.3
64 AT5G50820 NAC domain containing protein 97 NAC domain containing protein 97,
NAC domain containing protein 97		 0.66 0.3 -0.32
65 AT3G10140 RECA homolog 3 RECA homolog 3 0.66 0.32 -0.32
66 AT2G40620 Basic-leucine zipper (bZIP) transcription factor family
protein		 -0.65 0.3 -0.3
67 AT3G25560 NSP-interacting kinase 2 NSP-interacting kinase 2 0.65 0.31 -0.33
68 AT4G18500 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.65 0.31 -0.3
69 AT1G35380 transposable element gene -0.65 0.31 -0.33
70 AT1G24060 unknown protein; Has 7 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.65 0.3 -0.33
71 AT5G02690 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: 9 growth stages; Has 2 Blast hits to 2
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.65 0.31 -0.3
72 AT4G11970 YTH family protein 0.65 0.31 -0.34
73 AT3G27440 uridine kinase-like 5 uridine kinase-like 5 -0.65 0.32 -0.33
74 AT3G49600 ubiquitin-specific protease 26 ATUBP26, SUP32, ubiquitin-specific
protease 26		 0.65 0.31 -0.32
75 AT1G76920 F-box family protein -0.65 0.3 -0.3
76 AT2G38590 F-box and associated interaction domains-containing protein 0.65 0.31 -0.31
77 AT5G40520 unknown protein; Has 3679 Blast hits to 2474 proteins in
390 species: Archae - 10; Bacteria - 571; Metazoa - 1012;
Fungi - 528; Plants - 214; Viruses - 74; Other Eukaryotes -
1270 (source: NCBI BLink).		 0.65 0.33 -0.31
78 AT4G10370 Cysteine/Histidine-rich C1 domain family protein -0.65 0.32 -0.32
79 AT1G54440 Polynucleotidyl transferase, ribonuclease H fold protein
with HRDC domain		 0.64 0.3 -0.32
80 AT1G32540 lsd one like 1 lsd one like 1 0.64 0.3 -0.31
81 AT3G61800 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF2043 (InterPro:IPR018610), ENTH/VHS
(InterPro:IPR008942); Has 308 Blast hits to 279 proteins in
95 species: Archae - 2; Bacteria - 30; Metazoa - 120; Fungi
- 19; Plants - 44; Viruses - 2; Other Eukaryotes - 91
(source: NCBI BLink).		 0.64 0.31 -0.31
82 AT3G61940 Cation efflux family protein ATMTPA1, MTPA1 0.64 0.34 -0.32
83 AT1G08340 Rho GTPase activating protein with PAK-box/P21-Rho-binding
domain		 -0.64 0.29 -0.33
84 AT3G18450 PLAC8 family protein -0.64 0.32 -0.32
85 AT1G05400 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G06810.1); Has 31 Blast hits
to 31 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.64 0.32 -0.31
86 AT4G08930 APR-like 6 APR-like 6, APR-like 6 -0.64 0.32 -0.32
87 AT5G59040 copper transporter 3 copper transporter 3 0.64 0.32 -0.31
88 AT5G38670 Galactose oxidase/kelch repeat superfamily protein -0.64 0.3 -0.31
89 AT2G19420 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.64 0.32 -0.32
90 AT2G37980 O-fucosyltransferase family protein -0.64 0.31 -0.32
91 AT3G20190 Leucine-rich repeat protein kinase family protein -0.64 0.33 -0.32
92 AT5G56320 expansin A14 ATEXP14, expansin A14, ATHEXP
ALPHA 1.5, EXPANSIN 14, expansin
A14		 -0.64 0.32 -0.31
93 AT1G71697 choline kinase 1 choline kinase 1, CHOLINE KINASE,
choline kinase 1		 -0.64 0.32 -0.31
94 AT3G16970 Plant self-incompatibility protein S1 family -0.63 0.31 -0.32
95 AT1G73970 unknown protein; Has 34 Blast hits to 33 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.63 0.31 -0.31
96 AT3G02140 AFP2 (ABI five-binding protein 2) family protein ABI FIVE BINDING PROTEIN 4, TWO OR
MORE ABRES-CONTAINING GENE 2		 -0.63 0.31 -0.31
97 AT1G34590 transposable element gene 0.63 0.3 -0.31
98 AT1G78840 F-box/RNI-like/FBD-like domains-containing protein 0.63 0.3 -0.32
99 AT2G21480 Malectin/receptor-like protein kinase family protein 0.63 0.31 -0.31
100 AT2G32710 Cyclin-dependent kinase inhibitor family protein CYCLIN-DEPENDENT KINASE INHIBITOR
2, INTERACTORS OF CDC2 KINASE 7,
KRP4, KIP-RELATED PROTEIN 4		 -0.63 0.31 -0.31
101 AT1G68980 Tetratricopeptide repeat (TPR)-like superfamily protein 0.63 0.32 -0.29
102 AT3G50590 Transducin/WD40 repeat-like superfamily protein -0.63 0.32 -0.32
103 AT4G14815 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.63 0.31 -0.33
104 AT1G14080 fucosyltransferase 6 ATFUT6, fucosyltransferase 6 -0.62 0.3 -0.31
105 AT2G20210 RNI-like superfamily protein -0.62 0.34 -0.32
106 AT2G36720 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger domain		 0.62 0.3 -0.32
107 AT4G32920 glycine-rich protein 0.62 0.32 -0.29
108 AT2G34180 CBL-interacting protein kinase 13 WPL4-LIKE 2, CBL-interacting
protein kinase 13, SNF1-RELATED
PROTEIN KINASE 3.7, WPL4-LIKE 2		 -0.62 0.33 -0.32
109 AT3G20620 F-box family protein-related 0.62 0.31 -0.31
110 AT3G04200 RmlC-like cupins superfamily protein 0.62 0.31 -0.3
111 AT1G21300 transposable element gene -0.62 0.31 -0.33
112 AT3G49270 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING:
4 anthesis, C globular stage, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: proline-rich family protein (TAIR:AT3G49300.1); Has 63
Blast hits to 43 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 31; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 -0.62 0.33 -0.3
113 AT5G13990 exocyst subunit exo70 family protein C2 exocyst subunit exo70 family
protein C2, exocyst subunit exo70
family protein C2		 -0.62 0.32 -0.32
114 AT2G35510 similar to RCD one 1 similar to RCD one 1 0.62 0.31 -0.33
115 AT4G07460 transposable element gene -0.62 0.31 -0.31
116 AT3G61700 Plant protein 1589 of unknown function 0.62 0.32 -0.31
117 AT5G07700 myb domain protein 76 myb domain protein 76, myb domain
protein 76		 0.62 0.33 -0.32
118 AT2G34020 Calcium-binding EF-hand family protein -0.62 0.3 -0.32
119 AT1G80420 BRCT domain-containing DNA repair protein ATXRCC1 -0.61 0.31 -0.3
120 AT3G42290 transposable element gene -0.61 0.3 -0.33
121 AT5G43320 casein kinase I-like 8 casein kinase I-like 8 -0.61 0.33 -0.33
122 AT2G47560 RING/U-box superfamily protein -0.61 0.31 -0.31
123 AT5G51480 SKU5 similar 2 SKU5 similar 2 -0.61 0.33 -0.33
124 AT4G22780 ACT domain repeat 7 ACT domain repeat 7 -0.61 0.31 -0.33
125 AT5G05850 plant intracellular ras group-related LRR 1 plant intracellular ras
group-related LRR 1		 -0.61 0.29 -0.32
126 AT1G73690 cyclin-dependent kinase D1;1 CYCLIN-DEPENDENT KINASE D1,
CAK3AT, cyclin-dependent kinase
D1;1		 -0.61 0.33 -0.3
127 AT5G57620 myb domain protein 36 myb domain protein 36, myb domain
protein 36		 -0.61 0.32 -0.33
128 AT2G10020 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.61 0.35 -0.31
129 AT1G73340 Cytochrome P450 superfamily protein -0.6 0.28 -0.32
130 AT2G13150 Basic-leucine zipper (bZIP) transcription factor family
protein		 -0.6 0.32 -0.32
131 AT3G48530 SNF1-related protein kinase regulatory subunit gamma 1 SNF1-related protein kinase
regulatory subunit gamma 1		 -0.6 0.33 -0.31
132 AT4G30320 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 -0.6 0.31 -0.32
133 AT3G51540 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G08670.1); Has 22744 Blast
hits to 9965 proteins in 783 species: Archae - 64; Bacteria
- 2760; Metazoa - 8515; Fungi - 3864; Plants - 499; Viruses
- 702; Other Eukaryotes - 6340 (source: NCBI BLink).		 -0.6 0.32 -0.31
134 AT1G74740 calcium-dependent protein kinase 30 ATCPK30, CALCIUM-DEPENDENT PROTEIN
KINASE 1A, calcium-dependent
protein kinase 30		 -0.6 0.28 -0.33
135 AT3G56520 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 -0.6 0.3 -0.31
136 AT1G70460 root hair specific 10 proline-rich extensin-like
receptor kinase 13, proline-rich
extensin-like receptor kinase 13,
root hair specific 10		 -0.6 0.31 -0.3
137 AT5G30520 unknown protein; Has 50 Blast hits to 50 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.6 0.31 -0.31