AT1G64860 : RPOD1
Query Information
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AGICode AT1G64860
Description sigma factor A
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G64860 sigma factor A RPOD1, RNA POLYMERASE SIGMA
SUBUNIT 1, RNApolymerase sigma
subunit 2, sigma factor A, SIGB		 1 0.33 -0.31
2 AT2G43790 MAP kinase 6 MAP kinase 6, MAP kinase 6, MAP
kinase 6, MAP kinase 6		 -0.8 0.31 -0.32
3 AT3G05750 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
membrane; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 10 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G26910.1); Has 2317
Blast hits to 1467 proteins in 247 species: Archae - 4;
Bacteria - 750; Metazoa - 557; Fungi - 182; Plants - 180;
Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink).		 0.8 0.33 -0.32
4 AT5G35080 INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Mannose-6-phosphate receptor, binding
(InterPro:IPR009011), Glucosidase II beta subunit-like
(InterPro:IPR012913); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.78 0.28 -0.3
5 AT1G49010 Duplicated homeodomain-like superfamily protein 0.76 0.31 -0.31
6 AT3G16520 UDP-glucosyl transferase 88A1 UDP-glucosyl transferase 88A1 0.75 0.33 -0.3
7 AT2G38360 prenylated RAB acceptor 1.B4 prenylated RAB acceptor 1.B4 -0.74 0.3 -0.31
8 AT3G61870 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast inner membrane, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; Has 200 Blast hits to 200
proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa
- 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes
- 35 (source: NCBI BLink).		 0.74 0.3 -0.3
9 AT3G19720 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ACCUMULATION AND REPLICATION OF
CHLOROPLAST 5, Dynamin related
protein 5B		 0.74 0.31 -0.29
10 AT3G24550 proline extensin-like receptor kinase 1 proline-rich extensin-like
receptor kinase 1, proline-rich
extensin-like receptor kinase 1		 -0.73 0.3 -0.32
11 AT2G38590 F-box and associated interaction domains-containing protein 0.72 0.33 -0.32
12 AT3G16560 Protein phosphatase 2C family protein 0.72 0.32 -0.31
13 AT4G03700 transposable element gene 0.71 0.33 -0.31
14 AT3G16690 Nodulin MtN3 family protein AtSWEET16, SWEET16 -0.71 0.33 -0.31
15 AT2G22540 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 22, SHORT VEGETATIVE
PHASE		 0.7 0.31 -0.31
16 AT3G03410 EF hand calcium-binding protein family -0.7 0.3 -0.33
17 AT2G20900 diacylglycerol kinase 5 ATDGK5, diacylglycerol kinase 5 -0.7 0.31 -0.3
18 AT1G35580 cytosolic invertase 1 alkaline/neutral invertase G,
cytosolic invertase 1		 -0.7 0.31 -0.35
19 AT2G24540 Galactose oxidase/kelch repeat superfamily protein ATTENUATED FAR-RED RESPONSE 0.69 0.32 -0.33
20 AT5G40060 Disease resistance protein (NBS-LRR class) family 0.69 0.33 -0.31
21 AT1G58290 Glutamyl-tRNA reductase family protein Arabidopsis thaliana hemA 1, HEMA1 0.69 0.31 -0.31
22 AT3G27430 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein		 PBB1 -0.69 0.32 -0.33
23 AT3G09810 isocitrate dehydrogenase VI isocitrate dehydrogenase VI -0.69 0.32 -0.31
24 AT3G56080 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.69 0.3 -0.29
25 AT4G13790 SAUR-like auxin-responsive protein family -0.68 0.31 -0.33
26 AT5G52210 GTP-binding protein 1 ATARLB1, GTP-binding protein 1,
GTP-binding protein 1		 -0.68 0.31 -0.3
27 AT4G22730 Leucine-rich repeat protein kinase family protein 0.68 0.32 -0.33
28 AT2G01190 Octicosapeptide/Phox/Bem1p family protein PIGMENT DEFECTIVE 331 -0.68 0.32 -0.32
29 AT2G42680 multiprotein bridging factor 1A ARABIDOPSIS THALIANA MULTIPROTEIN
BRIDGING FACTOR 1A, multiprotein
bridging factor 1A		 -0.68 0.31 -0.31
30 AT3G10640 SNF7 family protein VPS60.1 -0.68 0.3 -0.31
31 AT5G17170 rubredoxin family protein enhancer of sos3-1 0.68 0.3 -0.33
32 AT3G58460 RHOMBOID-like protein 15 RHOMBOID-like protein 15,
RHOMBOID-like protein 15		 -0.68 0.34 -0.31
33 AT3G55950 CRINKLY4 related 3 ATCRR3, CRINKLY4 related 3 -0.68 0.33 -0.33
34 AT3G17420 glyoxysomal protein kinase 1 glyoxysomal protein kinase 1 -0.68 0.31 -0.33
35 AT5G46780 VQ motif-containing protein -0.68 0.33 -0.29
36 AT5G17640 Protein of unknown function (DUF1005) -0.67 0.32 -0.31
37 AT2G28550 related to AP2.7 related to AP2.7, TARGET OF EARLY
ACTIVATION TAGGED (EAT) 1		 0.67 0.29 -0.33
38 AT2G38700 mevalonate diphosphate decarboxylase 1 ATMVD1, mevalonate diphosphate
decarboxylase 1		 -0.67 0.33 -0.32
39 AT3G11780 MD-2-related lipid recognition domain-containing protein /
ML domain-containing protein		 -0.67 0.32 -0.33
40 AT2G25310 Protein of unknown function (DUF2012) -0.67 0.3 -0.32
41 AT3G60400 Mitochondrial transcription termination factor family
protein		 0.67 0.32 -0.3
42 AT1G75890 GDSL-like Lipase/Acylhydrolase superfamily protein 0.67 0.32 -0.34
43 AT1G69370 chorismate mutase 3 cm-3, chorismate mutase 3 -0.67 0.32 -0.31
44 AT2G47010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G17030.1); Has 72 Blast hits to 72 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.66 0.32 -0.31
45 AT3G53600 C2H2-type zinc finger family protein -0.66 0.31 -0.32
46 AT3G57480 zinc finger (C2H2 type, AN1-like) family protein -0.66 0.32 -0.31
47 AT4G39660 alanine:glyoxylate aminotransferase 2 alanine:glyoxylate
aminotransferase 2		 -0.66 0.31 -0.33
48 AT1G31710 Copper amine oxidase family protein -0.66 0.33 -0.31
49 AT2G17380 associated protein 19 associated protein 19 -0.66 0.33 -0.32
50 AT4G33905 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 0.66 0.31 -0.3
51 AT3G20800 Cell differentiation, Rcd1-like protein -0.66 0.33 -0.31
52 AT1G60570 Galactose oxidase/kelch repeat superfamily protein 0.66 0.29 -0.32
53 AT4G11900 S-locus lectin protein kinase family protein 0.66 0.33 -0.32
54 AT4G15955 alpha/beta-Hydrolases superfamily protein -0.66 0.31 -0.31
55 AT2G05520 glycine-rich protein 3 GLYCINE-RICH PROTEIN 3,
ARABIDOPSIS GLYCINE RICH PROTEIN
3, glycine-rich protein 3,
GLYCINE-RICH PROTEIN 3		 0.66 0.33 -0.31
56 AT1G13650 BEST Arabidopsis thaliana protein match is: 18S
pre-ribosomal assembly protein gar2-related
(TAIR:AT2G03810.4); Has 3688 Blast hits to 1629 proteins in
255 species: Archae - 22; Bacteria - 222; Metazoa - 684;
Fungi - 292; Plants - 62; Viruses - 14; Other Eukaryotes -
2392 (source: NCBI BLink).		 0.65 0.3 -0.31
57 AT4G03120 C2H2 and C2HC zinc fingers superfamily protein -0.65 0.29 -0.32
58 AT1G54490 exoribonuclease 4 ACC INSENSITIVE 1, EXORIBONUCLEASE
4, ETHYLENE INSENSITIVE 5,
exoribonuclease 4		 -0.65 0.31 -0.31
59 AT2G40060 Clathrin light chain protein clathrin light chain 2 -0.65 0.33 -0.31
60 AT4G02030 Vps51/Vps67 family (components of vesicular transport)
protein		 -0.65 0.31 -0.3
61 AT1G04750 vesicle-associated membrane protein 721 AT VAMP7B, ATVAMP721,
vesicle-associated membrane
protein 721, VESICLE-ASSOCIATED
MEMBRANE PROTEIN 7B		 -0.65 0.33 -0.32
62 AT5G40660 ATP12 protein-related -0.65 0.32 -0.33
63 AT4G31300 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein		 PBA1 -0.65 0.32 -0.33
64 AT2G30740 Protein kinase superfamily protein -0.65 0.32 -0.34
65 AT2G33610 switch subunit 3 switch subunit 3, CHROMATIN
REMODELING COMPLEX SUBUNIT B,
switch subunit 3		 -0.65 0.31 -0.33
66 AT3G03690 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 unfertilized embryo sac 7 0.65 0.33 -0.31
67 AT4G29230 NAC domain containing protein 75 NAC domain containing protein 75,
NAC domain containing protein 75		 -0.64 0.3 -0.31
68 AT2G03580 F-box family protein-related 0.64 0.31 -0.28
69 AT3G17100 sequence-specific DNA binding transcription factors -0.64 0.31 -0.32
70 AT1G71860 protein tyrosine phosphatase 1 ATPTP1, protein tyrosine
phosphatase 1		 -0.64 0.32 -0.32
71 AT1G06740 transposable element gene 0.64 0.31 -0.32
72 AT4G15430 ERD (early-responsive to dehydration stress) family protein 0.64 0.3 -0.3
73 AT5G56020 Got1/Sft2-like vescicle transport protein family -0.64 0.31 -0.3
74 AT5G44710 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33,
mitochondrial (InterPro:IPR013219); Has 101 Blast hits to
101 proteins in 55 species: Archae - 0; Bacteria - 0;
Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other
Eukaryotes - 8 (source: NCBI BLink).		 -0.64 0.33 -0.32
75 AT1G32540 lsd one like 1 lsd one like 1 0.63 0.31 -0.3
76 AT2G47550 Plant invertase/pectin methylesterase inhibitor superfamily -0.63 0.33 -0.33
77 AT5G65710 HAESA-like 2 HAESA-like 2 0.63 0.34 -0.31
78 AT3G18120 F-box associated ubiquitination effector family protein 0.63 0.32 -0.32
79 AT1G53840 pectin methylesterase 1 pectin methylesterase 1, pectin
methylesterase 1		 -0.63 0.3 -0.34
80 AT3G02140 AFP2 (ABI five-binding protein 2) family protein ABI FIVE BINDING PROTEIN 4, TWO OR
MORE ABRES-CONTAINING GENE 2		 -0.63 0.3 -0.31
81 AT5G59430 telomeric repeat binding protein 1 TELOMERE REPEAT BINDING PROTEIN 1,
telomeric repeat binding protein 1		 0.63 0.32 -0.33
82 AT3G02580 sterol 1 BOULE 1, DWARF 7, sterol 1 -0.63 0.31 -0.3
83 AT5G13610 Protein of unknown function (DUF155) -0.63 0.33 -0.32
84 AT2G35635 ubiquitin 7 RELATED TO UBIQUITIN 2, ubiquitin
7		 -0.63 0.31 -0.31
85 AT5G37260 Homeodomain-like superfamily protein CIRCADIAN 1, REVEILLE 2 0.63 0.31 -0.3
86 AT2G10900 transposable element gene 0.63 0.32 -0.31
87 AT1G18630 glycine-rich RNA-binding protein 6 glycine-rich RNA-binding protein 6 -0.62 0.3 -0.32
88 AT1G51160 SNARE-like superfamily protein -0.62 0.33 -0.34
89 AT3G13780 SMAD/FHA domain-containing protein -0.62 0.32 -0.3
90 AT4G04910 AAA-type ATPase family protein N-ethylmaleimide sensitive factor -0.62 0.32 -0.31
91 AT4G38470 ACT-like protein tyrosine kinase family protein serine/threonine/tyrosine kinase
46		 -0.62 0.32 -0.3
92 AT5G36290 Uncharacterized protein family (UPF0016) -0.62 0.33 -0.32
93 AT2G18770 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.62 0.3 -0.33
94 AT1G31710 Copper amine oxidase family protein -0.62 0.31 -0.3
95 AT1G32460 unknown protein; Has 19 Blast hits to 19 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.3 -0.32
96 AT1G72360 Integrase-type DNA-binding superfamily protein AtERF73, ethylene response factor
73, HYPOXIA RESPONSIVE ERF
(ETHYLENE RESPONSE FACTOR) 1		 -0.62 0.31 -0.32
97 AT5G64130 cAMP-regulated phosphoprotein 19-related protein -0.62 0.3 -0.33
98 AT3G02880 Leucine-rich repeat protein kinase family protein -0.62 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
99 C0263 UMP - UMP pyrimidine salvage pathway,
dolichyl-diphosphooligosaccharide biosynthesis,
lipid IVA biosynthesis,
uridine-5'-phosphate biosynthesis,
pyrimidine ribonucleotides interconversion 		0.75 0.43 -0.47 C0263